Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p016621 Quercus lobata HOM05D007709 ORTHO05D009577 1.6e-47 192.2 85 100.0
QL11p056199 Quercus lobata HOM05D007709 ORTHO05D009577 1.6e-47 192.2 85 100.0
Haze_02011 Corylus avellana HOM05D007709 ORTHO05D009577 1.1e-27 126.3 83 68.7
CiPaw.05G092600 Carya illinoinensis HOM05D007709 ORTHO05D009577 3.9e-25 117.9 86 62.8
Cfa005362 Carpinus fangiana HOM05D007709 ORTHO05D009577 5.6e-24 114.0 71 69.0
Peaxi162Scf00362g00133 Petunia axillaris HOM05D007709 ORTHO05D009577 1.3e-17 92.8 83 50.6
Migut.N01357 Erythranthe guttata HOM05D007709 ORTHO05D009577 8.7e-17 90.1 83 44.6
Prupe.8G179200 Prunus persica HOM05D007709 ORTHO05D009577 1.9e-16 89.0 70 57.1
HanXRQChr16g0501351 Helianthus annuus HOM05D007709 ORTHO05D009577 3.3e-16 88.2 80 47.5
Haze_22002 Corylus avellana HOM05D022555 ORTHO05D009577 4.3e-16 87.8 62 62.9
Nn5g30992 Nelumbo nucifera HOM05D007709 ORTHO05D009577 4.8e-15 84.3 71 54.9
CANSAT25G2121 Cannabis sativa HOM05D007709 ORTHO05D009577 1.8e-14 82.4 72 51.4
CAN.G1725.3 Capsicum annuum HOM05D007709 ORTHO05D009577 1.8e-14 82.4 72 52.8
Sc14g0002460 Simmondsia chinensis HOM05D007709 ORTHO05D009577 4.1e-14 81.3 71 50.7
Cfa005363 Carpinus fangiana HOM05D007709 ORTHO05D009577 5.3e-14 80.9 71 53.5
Thecc.02G145600 Theobroma cacao HOM05D007709 ORTHO05D009577 5.3e-14 80.9 66 53.0
TWI31G1411 Tripterygium wilfordii HOM05D007709 ORTHO05D009577 5.3e-14 80.9 64 54.7
RcHm_v2.0_Chr6g0280851 Rosa chinensis HOM05D007709 ORTHO05D009577 1.2e-13 79.7 61 57.4
Aqoxy6G01622 Aquilegia oxysepala HOM05D007709 ORTHO05D009577 2.0e-13 79.0 78 50.0
CSS0014347 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 2.0e-13 79.0 80 47.5
Medtr8g012330 Medicago truncatula HOM05D001671 ORTHO05D001844 2.6e-13 78.6 72 51.4
QL03p016612 Quercus lobata HOM05D007709 ORTHO05D009577 2.6e-13 78.6 68 50.0
QL11p056189 Quercus lobata HOM05D007709 ORTHO05D009577 2.6e-13 78.6 68 50.0
QL11p056219 Quercus lobata HOM05D007709 ORTHO05D009577 2.6e-13 78.6 68 50.0
Thecc.02G145500 Theobroma cacao HOM05D007709 ORTHO05D009577 2.6e-13 78.6 65 56.9
Ah.01g017550 Amaranthus hybridus HOM05D007709 ORTHO05D009577 5.9e-13 77.4 72 50.0
Lj3g0026575 Lotus japonicus HOM05D007709 ORTHO05D009577 5.9e-13 77.4 81 50.6
COL.COLO4_34305 Corchorus olitorius HOM05D007709 ORTHO05D009577 7.7e-13 77.0 64 56.2
BcaC01g04855 Brassica carinata HOM05D007709 ORTHO05D009577 1.0e-12 76.6 74 45.9
A03p27450 Brassica napus HOM05D007709 ORTHO05D009577 1.0e-12 76.6 74 45.9
C03p33100 Brassica napus HOM05D007709 ORTHO05D009577 1.0e-12 76.6 74 45.9
BolC3t15636H Brassica oleracea HOM05D007709 ORTHO05D009577 1.0e-12 76.6 74 45.9
BraA03t11957Z Brassica rapa HOM05D007709 ORTHO05D009577 1.0e-12 76.6 74 45.9
Cc04_g09140 Coffea canephora HOM05D007709 ORTHO05D009577 1.0e-12 76.6 63 54.0
Nitab4.5_0000783g0120 Nicotiana tabacum HOM05D007709 ORTHO05D009577 1.0e-12 76.6 58 56.9
QL03p016617 Quercus lobata HOM05D007709 ORTHO05D009577 1.0e-12 76.6 67 49.3
AL4G13130 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 1.3e-12 76.3 64 51.6
Manes.11G110300 Manihot esculenta HOM05D007709 ORTHO05D009577 1.7e-12 75.9 67 49.3
Atru.chr5.3536 Acer truncatum HOM05D007709 ORTHO05D009577 2.9e-12 75.1 68 50.0
AT2G23240 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 2.9e-12 75.1 59 54.2
Cpa.g.sc60.30 Carica papaya HOM05D007709 ORTHO05D009577 2.9e-12 75.1 71 52.1
Sp4g00020 Schrenkiella parvula HOM05D007709 ORTHO05D009577 3.8e-12 74.7 68 47.1
Thhalv10000588m.g Eutrema salsugineum HOM05D007709 ORTHO05D009577 5.0e-12 74.3 67 49.3
AL4G40360 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 1.4e-11 72.8 59 50.8
AT2G42000 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 1.4e-11 72.8 59 50.8
Carub.0004s0246 Capsella rubella HOM05D007709 ORTHO05D009577 1.4e-11 72.8 65 49.2
QL11p056180 Quercus lobata HOM05D007709 ORTHO05D009577 1.4e-11 72.8 61 49.2
Potri.009G167700 Populus trichocarpa HOM05D007709 ORTHO05D009577 1.9e-11 72.4 74 48.6
Ciclev10029706m.g Citrus clementina HOM05D007709 ORTHO05D009577 3.2e-11 71.6 68 54.4
Lalb_Chr07g0194411 Lupinus albus HOM05D007709 ORTHO05D009577 5.5e-11 70.9 73 46.6
MELO3C013494.2 Cucumis melo HOM05D007709 ORTHO05D009577 7.2e-11 70.5 60 55.0
Glyma.18G157800 Glycine max HOM05D007709 ORTHO05D009577 7.2e-11 70.5 67 47.8
MD05G1135300 Malus domestica HOM05D007709 ORTHO05D009577 1.2e-10 69.7 60 53.3
arahy.Tifrunner.gnm1.ann1.0QS5M4 Arachis hypogaea HOM05D007709 ORTHO05D009577 2.7e-10 68.6 60 50.0
BcaB01g02955 Brassica carinata HOM05D007709 ORTHO05D009577 2.7e-10 68.6 74 40.5
PSO541G6469 Papaver somniferum HOM05D007709 ORTHO05D009577 2.7e-10 68.6 62 51.6
CARHR292840 Cardamine hirsuta HOM05D007709 ORTHO05D009577 4.6e-10 67.8 61 49.2
DCAR_026620 Daucus carota HOM05D007709 ORTHO05D009577 4.6e-10 67.8 62 48.4
arahy.Tifrunner.gnm1.ann1.9G47NZ Arachis hypogaea HOM05D007709 ORTHO05D009577 6.1e-10 67.4 60 50.0
Gohir.A04G112024 Gossypium hirsutum HOM05D007709 ORTHO05D009577 6.1e-10 67.4 51 56.9
Gohir.D04G152500 Gossypium hirsutum HOM05D007709 ORTHO05D009577 6.1e-10 67.4 51 56.9
Gorai.012G139300 Gossypium raimondii HOM05D007709 ORTHO05D009577 6.1e-10 67.4 51 56.9
Eucgr.I01530 Eucalyptus grandis HOM05D007709 ORTHO05D009577 1.0e-09 66.6 52 50.0
PGR142G3111 Punica granatum HOM05D007709 ORTHO05D009577 1.0e-09 66.6 55 52.7
CSS0015820 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 1.4e-09 66.2 80 42.5
THA.LOC104807798 Tarenaya hassleriana HOM05D007709 ORTHO05D009577 1.4e-09 66.2 65 44.6
Os10g0542100 Oryza sativa ssp. japonica HOM05D007709 ORTHO05D009577 1.8e-09 65.9 57 47.4
Carub.0004s2433 Capsella rubella HOM05D007709 ORTHO05D009577 3.0e-09 65.1 77 41.6
HPP92_022159 Vanilla planifolia HOM05D007709 ORTHO05D009577 3.0e-09 65.1 75 42.7
FAN15G1429 Fragaria x ananassa HOM05D007709 ORTHO05D009577 5.1e-09 64.3 73 41.1
FAN24G0243 Fragaria x ananassa HOM05D007709 ORTHO05D009577 5.1e-09 64.3 78 38.5
Gorai.002G013700 Gossypium raimondii HOM05D007709 ORTHO05D009577 6.7e-09 63.9 58 48.3
Sed0006301 Sechium edule HOM05D007709 ORTHO05D009577 6.7e-09 63.9 50 54.0
TPR.G29157 Trifolium pratense HOM05D007709 ORTHO05D009577 1.1e-08 63.2 66 47.0
Rhsim05G0047200 Rhododendron simsii HOM05D007709 ORTHO05D009577 9.7e-08 60.1 71 40.8
CSS0018079 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 2.2e-07 58.9 81 37.0
CSS0032875 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 2.2e-07 58.9 81 37.0
Psat3g150320 Pisum sativum HOM05D007709 ORTHO05D009577 3.7e-07 58.2 56 50.0
DCAR_026621 Daucus carota HOM05D000628 ORTHO05D009577 8.2e-07 57.0 61 44.3
Sopen01g054290 Solanum pennellii HOM05D007709 ORTHO05D009577 8.2e-07 57.0 62 43.5
SalBow5G1409 Salvia bowleyana HOM05D007709 ORTHO05D009577 2.4e-06 55.5 80 36.2
SalBow5G2601 Salvia bowleyana HOM05D007709 ORTHO05D009577 2.4e-06 55.5 80 36.2
FAN27G0823 Fragaria x ananassa HOM05D007709 ORTHO05D009577 5.3e-06 54.3 61 42.6
FvH4_2g16730 Fragaria vesca HOM05D007709 ORTHO05D009577 9.1e-06 53.5 61 42.6


User provided reference genes

Program Settings