Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p056180 Quercus lobata HOM05D007709 ORTHO05D009577 2.3e-33 145.2 64 100.0
QL03p016612 Quercus lobata HOM05D007709 ORTHO05D009577 5.6e-32 140.6 64 96.9
QL03p016617 Quercus lobata HOM05D007709 ORTHO05D009577 5.6e-32 140.6 64 96.9
QL11p056189 Quercus lobata HOM05D007709 ORTHO05D009577 5.6e-32 140.6 64 96.9
QL11p056219 Quercus lobata HOM05D007709 ORTHO05D009577 5.6e-32 140.6 64 96.9
Cfa005363 Carpinus fangiana HOM05D007709 ORTHO05D009577 1.0e-17 93.2 60 65.0
COL.COLO4_34305 Corchorus olitorius HOM05D007709 ORTHO05D009577 1.8e-17 92.4 65 58.5
PGR142G3111 Punica granatum HOM05D007709 ORTHO05D009577 3.9e-17 91.3 64 57.8
Cfa005362 Carpinus fangiana HOM05D007709 ORTHO05D009577 3.3e-16 88.2 61 59.0
RcHm_v2.0_Chr6g0280851 Rosa chinensis HOM05D007709 ORTHO05D009577 4.3e-16 87.8 64 56.2
Atru.chr5.3536 Acer truncatum HOM05D007709 ORTHO05D009577 5.7e-16 87.4 64 57.8
Prupe.8G179200 Prunus persica HOM05D007709 ORTHO05D009577 7.4e-16 87.0 67 55.2
Haze_02011 Corylus avellana HOM05D007709 ORTHO05D009577 1.3e-15 86.3 59 62.7
Migut.N01357 Erythranthe guttata HOM05D007709 ORTHO05D009577 1.3e-15 86.3 63 57.1
Peaxi162Scf00362g00133 Petunia axillaris HOM05D007709 ORTHO05D009577 1.6e-15 85.9 64 56.2
arahy.Tifrunner.gnm1.ann1.9G47NZ Arachis hypogaea HOM05D007709 ORTHO05D009577 2.2e-15 85.5 64 53.1
AL4G13130 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 2.8e-15 85.1 64 62.5
HanXRQChr16g0501351 Helianthus annuus HOM05D007709 ORTHO05D009577 2.8e-15 85.1 63 60.3
Lj3g0026575 Lotus japonicus HOM05D007709 ORTHO05D009577 2.8e-15 85.1 64 56.2
Manes.11G110300 Manihot esculenta HOM05D007709 ORTHO05D009577 2.8e-15 85.1 68 54.4
CAN.G1725.3 Capsicum annuum HOM05D007709 ORTHO05D009577 3.7e-15 84.7 61 59.0
Thhalv10000588m.g Eutrema salsugineum HOM05D007709 ORTHO05D009577 4.8e-15 84.3 64 60.9
MD05G1135300 Malus domestica HOM05D007709 ORTHO05D009577 4.8e-15 84.3 63 55.6
TWI31G1411 Tripterygium wilfordii HOM05D007709 ORTHO05D009577 4.8e-15 84.3 58 58.6
AT2G23240 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 6.3e-15 84.0 64 60.9
Ciclev10029706m.g Citrus clementina HOM05D007709 ORTHO05D009577 6.3e-15 84.0 64 54.7
Ah.01g017550 Amaranthus hybridus HOM05D007709 ORTHO05D009577 1.1e-14 83.2 60 63.3
DCAR_026620 Daucus carota HOM05D007709 ORTHO05D009577 1.8e-14 82.4 69 56.5
PSO541G6469 Papaver somniferum HOM05D007709 ORTHO05D009577 1.8e-14 82.4 65 60.0
Carub.0004s0246 Capsella rubella HOM05D007709 ORTHO05D009577 2.4e-14 82.0 63 57.1
Sc14g0002460 Simmondsia chinensis HOM05D007709 ORTHO05D009577 2.4e-14 82.0 62 59.7
BcaC01g04855 Brassica carinata HOM05D007709 ORTHO05D009577 3.1e-14 81.6 64 60.9
C03p33100 Brassica napus HOM05D007709 ORTHO05D009577 3.1e-14 81.6 64 60.9
BolC3t15636H Brassica oleracea HOM05D007709 ORTHO05D009577 3.1e-14 81.6 64 60.9
Eucgr.I01530 Eucalyptus grandis HOM05D007709 ORTHO05D009577 4.1e-14 81.3 61 57.4
AT2G42000 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 5.3e-14 80.9 62 54.8
Glyma.18G157800 Glycine max HOM05D007709 ORTHO05D009577 5.3e-14 80.9 58 56.9
arahy.Tifrunner.gnm1.ann1.0QS5M4 Arachis hypogaea HOM05D007709 ORTHO05D009577 9.0e-14 80.1 64 50.0
CANSAT25G2121 Cannabis sativa HOM05D007709 ORTHO05D009577 9.0e-14 80.1 56 58.9
Os10g0542100 Oryza sativa ssp. japonica HOM05D007709 ORTHO05D009577 9.0e-14 80.1 49 63.3
Medtr8g012330 Medicago truncatula HOM05D001671 ORTHO05D001844 1.2e-13 79.7 64 54.7
AL4G40360 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 1.5e-13 79.3 62 53.2
A03p27450 Brassica napus HOM05D007709 ORTHO05D009577 1.5e-13 79.3 64 59.4
BraA03t11957Z Brassica rapa HOM05D007709 ORTHO05D009577 1.5e-13 79.3 64 59.4
Cpa.g.sc60.30 Carica papaya HOM05D007709 ORTHO05D009577 1.5e-13 79.3 61 57.4
Sp4g00020 Schrenkiella parvula HOM05D007709 ORTHO05D009577 1.5e-13 79.3 64 57.8
Sopen01g054290 Solanum pennellii HOM05D007709 ORTHO05D009577 2.0e-13 79.0 64 56.2
Nitab4.5_0000783g0120 Nicotiana tabacum HOM05D007709 ORTHO05D009577 2.6e-13 78.6 65 55.4
BcaB01g02955 Brassica carinata HOM05D007709 ORTHO05D009577 3.4e-13 78.2 61 62.3
Aqoxy6G01622 Aquilegia oxysepala HOM05D007709 ORTHO05D009577 4.5e-13 77.8 61 52.5
CiPaw.05G092600 Carya illinoinensis HOM05D007709 ORTHO05D009577 7.7e-13 77.0 64 53.1
CSS0014347 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 1.3e-12 76.3 66 57.6
CARHR292840 Cardamine hirsuta HOM05D007709 ORTHO05D009577 1.3e-12 76.3 66 56.1
Thecc.02G145500 Theobroma cacao HOM05D007709 ORTHO05D009577 1.3e-12 76.3 60 53.3
TPR.G29157 Trifolium pratense HOM05D007709 ORTHO05D009577 1.3e-12 76.3 53 60.4
Thecc.02G145600 Theobroma cacao HOM05D007709 ORTHO05D009577 2.9e-12 75.1 55 52.7
Cc04_g09140 Coffea canephora HOM05D007709 ORTHO05D009577 6.5e-12 73.9 55 56.4
Lalb_Chr07g0194411 Lupinus albus HOM05D007709 ORTHO05D009577 6.5e-12 73.9 47 61.7
Haze_22002 Corylus avellana HOM05D022555 ORTHO05D009577 8.5e-12 73.6 61 52.5
MELO3C013494.2 Cucumis melo HOM05D007709 ORTHO05D009577 8.5e-12 73.6 68 52.9
Gorai.002G013700 Gossypium raimondii HOM05D007709 ORTHO05D009577 1.1e-11 73.2 61 50.8
Gohir.A04G112024 Gossypium hirsutum HOM05D007709 ORTHO05D009577 1.4e-11 72.8 44 65.9
Gohir.D04G152500 Gossypium hirsutum HOM05D007709 ORTHO05D009577 1.4e-11 72.8 44 65.9
Gorai.012G139300 Gossypium raimondii HOM05D007709 ORTHO05D009577 1.4e-11 72.8 44 65.9
QL03p016621 Quercus lobata HOM05D007709 ORTHO05D009577 1.9e-11 72.4 61 49.2
QL11p056199 Quercus lobata HOM05D007709 ORTHO05D009577 1.9e-11 72.4 61 49.2
Sed0006301 Sechium edule HOM05D007709 ORTHO05D009577 1.9e-11 72.4 65 52.3
Carub.0004s2433 Capsella rubella HOM05D007709 ORTHO05D009577 3.2e-11 71.6 62 50.0
THA.LOC104807798 Tarenaya hassleriana HOM05D007709 ORTHO05D009577 7.2e-11 70.5 54 53.7
FAN27G0823 Fragaria x ananassa HOM05D007709 ORTHO05D009577 1.2e-10 69.7 61 52.5
Nn5g30992 Nelumbo nucifera HOM05D007709 ORTHO05D009577 1.2e-10 69.7 66 53.0
HPP92_022159 Vanilla planifolia HOM05D007709 ORTHO05D009577 1.2e-10 69.7 47 55.3
Potri.009G167700 Populus trichocarpa HOM05D007709 ORTHO05D009577 3.6e-10 68.2 65 53.8
Rhsim05G0047200 Rhododendron simsii HOM05D007709 ORTHO05D009577 7.9e-10 67.0 77 45.5
CSS0015820 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 1.8e-09 65.9 66 53.0
FvH4_2g16730 Fragaria vesca HOM05D007709 ORTHO05D009577 1.8e-09 65.9 64 48.4
FAN24G0243 Fragaria x ananassa HOM05D007709 ORTHO05D009577 1.8e-09 65.9 64 48.4
FAN15G1429 Fragaria x ananassa HOM05D007709 ORTHO05D009577 3.9e-09 64.7 64 48.4
DCAR_026621 Daucus carota HOM05D000628 ORTHO05D009577 1.5e-08 62.8 47 59.6
Psat3g150320 Pisum sativum HOM05D007709 ORTHO05D009577 2.5e-08 62.0 44 54.5
Gohir.D01G011700 Gossypium hirsutum HOM05D007709 ORTHO05D009577 3.3e-08 61.6 54 50.0
SalBow5G1409 Salvia bowleyana HOM05D007709 ORTHO05D009577 8.2e-07 57.0 62 43.5
SalBow5G2601 Salvia bowleyana HOM05D007709 ORTHO05D009577 8.2e-07 57.0 62 43.5
Phvul.008G133200 Phaseolus vulgaris HOM05D030083 ORTHO05D009577 3.1e-06 55.1 33 63.6
Phvul.008G133400 Phaseolus vulgaris HOM05D030083 ORTHO05D009577 3.1e-06 55.1 33 63.6
CSS0018079 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 5.3e-06 54.3 65 41.5
CSS0032875 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 5.3e-06 54.3 65 41.5


User provided reference genes

Program Settings