Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p054687 Quercus lobata HOM05D006026 ORTHO05D007502 3.9e-162 574.7 283 100.0
QL11p054672 Quercus lobata HOM05D006026 ORTHO05D007502 9.0e-143 510.4 269 94.8
Cfa005337 Carpinus fangiana HOM05D006026 ORTHO05D007502 1.8e-135 486.1 269 88.1
CiPaw.05G090000 Carya illinoinensis HOM05D006026 ORTHO05D007502 2.0e-134 482.6 269 88.1
Eucgr.G01834 Eucalyptus grandis HOM05D006026 ORTHO05D007502 1.0e-133 480.3 269 87.0
Hund06172 Selenicereus undatus HOM05D006026 ORTHO05D007502 1.0e-133 480.3 268 87.3
Dinv41889 Davidia involucrata HOM05D006026 ORTHO05D007502 1.3e-133 479.9 269 88.1
arahy.Tifrunner.gnm1.ann1.C9RI5X Arachis hypogaea HOM05D006026 ORTHO05D007502 1.7e-133 479.6 269 87.0
arahy.Tifrunner.gnm1.ann1.NGL2PI Arachis hypogaea HOM05D006026 ORTHO05D007502 1.7e-133 479.6 269 87.0
Medtr3g118430 Medicago truncatula HOM05D006026 ORTHO05D007502 2.2e-133 479.2 269 86.6
CSS0017921 Camellia sinensis var. sinensis HOM05D006026 ORTHO05D007502 3.8e-133 478.4 269 87.0
CSS0009314 Camellia sinensis var. sinensis HOM05D006026 ORTHO05D007502 5.0e-133 478.0 269 86.6
CsaV3_6G012790 Cucumis sativus L. HOM05D006026 ORTHO05D007502 5.0e-133 478.0 268 87.7
Glyma.04G001500 Glycine max HOM05D006026 ORTHO05D007502 5.0e-133 478.0 269 86.6
Nitab4.5_0000783g0230 Nicotiana tabacum HOM05D006026 ORTHO05D007502 6.5e-133 477.6 269 87.4
Nitab4.5_0009888g0010 Nicotiana tabacum HOM05D006026 ORTHO05D007502 6.5e-133 477.6 269 87.4
TPR.G38515 Trifolium pratense HOM05D006026 ORTHO05D007502 6.5e-133 477.6 269 85.9
COL.COLO4_17947 Corchorus olitorius HOM05D006026 ORTHO05D007502 8.5e-133 477.2 269 87.0
Cpa.g.sc20.183 Carica papaya HOM05D006026 ORTHO05D007502 1.1e-132 476.9 268 87.3
Potri.004G183100 Populus trichocarpa HOM05D006026 ORTHO05D007502 1.1e-132 476.9 269 85.9
Thecc.02G047100 Theobroma cacao HOM05D006026 ORTHO05D007502 1.1e-132 476.9 269 86.2
Actinidia18011 Actinidia chinensis HOM05D006026 ORTHO05D007502 1.4e-132 476.5 269 86.6
Manes.04G065300 Manihot esculenta HOM05D006026 ORTHO05D007502 1.4e-132 476.5 268 86.2
Psat5g000600 Pisum sativum HOM05D006026 ORTHO05D007502 1.4e-132 476.5 269 85.5
Sc14g0002380 Simmondsia chinensis HOM05D006026 ORTHO05D007502 1.9e-132 476.1 269 85.5
CAN.G1235.18 Capsicum annuum HOM05D006026 ORTHO05D007502 3.2e-132 475.3 269 87.0
PGSC0003DMG400018657 Solanum tuberosum HOM05D006026 ORTHO05D007502 3.2e-132 475.3 269 87.0
Solyc01g112060.4 Solanum lycopersicum HOM05D006026 ORTHO05D007502 4.2e-132 474.9 269 86.6
Sopen01g054110 Solanum pennellii HOM05D006026 ORTHO05D007502 4.2e-132 474.9 269 86.6
ClCG00G000750 Citrullus lanatus HOM05D006026 ORTHO05D007502 5.5e-132 474.6 268 86.9
ClCG00G001730 Citrullus lanatus HOM05D006026 ORTHO05D007502 5.5e-132 474.6 268 86.9
Potri.009G143000 Populus trichocarpa HOM05D006026 ORTHO05D007502 5.5e-132 474.6 268 86.6
Sabra09G0110800 Salix brachista HOM05D006026 ORTHO05D007502 5.5e-132 474.6 268 85.8
FvH4_2g16360 Fragaria vesca HOM05D006026 ORTHO05D007502 7.2e-132 474.2 269 84.8
FAN24G0545 Fragaria x ananassa HOM05D006026 ORTHO05D007502 7.2e-132 474.2 269 84.8
FAN24G2355 Fragaria x ananassa HOM05D006026 ORTHO05D007502 7.2e-132 474.2 269 84.8
RcHm_v2.0_Chr6g0280111 Rosa chinensis HOM05D006026 ORTHO05D007502 7.2e-132 474.2 269 84.8
FAN15G0892 Fragaria x ananassa HOM05D006026 ORTHO05D007502 9.3e-132 473.8 269 84.4
Hma1.2p1_0271F.1_g109050 Hydrangea macrophylla HOM05D006026 ORTHO05D007502 9.3e-132 473.8 268 86.6
Prupe.8G176300 Prunus persica HOM05D006026 ORTHO05D007502 9.3e-132 473.8 269 84.8
Sed0018198 Sechium edule HOM05D006026 ORTHO05D007502 9.3e-132 473.8 268 87.3
Rhsim11G0196300 Rhododendron simsii HOM05D006026 ORTHO05D007502 1.6e-131 473.0 269 85.5
EL10Ac9g21273 Beta vulgaris HOM05D006026 ORTHO05D007502 2.1e-131 472.6 269 85.5
Lj1g0012573 Lotus japonicus HOM05D006026 ORTHO05D007502 2.1e-131 472.6 269 84.8
MD05G1131800 Malus domestica HOM05D006026 ORTHO05D007502 2.1e-131 472.6 269 84.8
FAN27G0355 Fragaria x ananassa HOM05D006026 ORTHO05D007502 2.7e-131 472.2 269 84.0
Atru.chr5.3501 Acer truncatum HOM05D006026 ORTHO05D007502 3.6e-131 471.9 268 85.8
ECA233G5240 Erigeron canadensis HOM05D006026 ORTHO05D007502 3.6e-131 471.9 268 84.7
Gorai.005G258300 Gossypium raimondii HOM05D006026 ORTHO05D007502 3.6e-131 471.9 269 86.2
Peaxi162Scf00362g00257 Petunia axillaris HOM05D006026 ORTHO05D007502 3.6e-131 471.9 269 86.2
Ciclev10028591m.g Citrus clementina HOM05D006026 ORTHO05D007502 4.6e-131 471.5 268 84.7
Phvul.009G116200 Phaseolus vulgaris HOM05D006026 ORTHO05D007502 4.6e-131 471.5 269 85.1
Gohir.A03G209000 Gossypium hirsutum HOM05D006026 ORTHO05D007502 6.1e-131 471.1 269 85.9
Actinidia20559 Actinidia chinensis HOM05D006026 ORTHO05D007502 7.9e-131 470.7 269 85.9
AUR62027142 Chenopodium quinoa HOM05D006026 ORTHO05D007502 7.9e-131 470.7 269 85.5
AUR62029494 Chenopodium quinoa HOM05D006026 ORTHO05D007502 7.9e-131 470.7 269 85.5
Gohir.D02G230700 Gossypium hirsutum HOM05D006026 ORTHO05D007502 1.0e-130 470.3 269 85.9
THA.LOC104807393 Tarenaya hassleriana HOM05D006026 ORTHO05D007502 1.0e-130 470.3 269 85.5
Lsat_1_v5_gn_8_120201 Lactuca sativa HOM05D006026 ORTHO05D007502 1.3e-130 469.9 268 84.0
PGR042G3337 Punica granatum HOM05D006026 ORTHO05D007502 1.8e-130 469.5 269 85.5
Carub.0007s0505 Capsella rubella HOM05D006026 ORTHO05D007502 2.3e-130 469.2 269 85.1
AUR62012942 Chenopodium quinoa HOM05D006026 ORTHO05D007502 2.3e-130 469.2 269 85.1
MSTRG.19950 Avicennia marina HOM05D006026 ORTHO05D007502 3.0e-130 468.8 268 85.1
Lalb_Chr08g0246801 Lupinus albus HOM05D006026 ORTHO05D007502 3.0e-130 468.8 270 85.6
BcaC01g00829 Brassica carinata HOM05D006026 ORTHO05D007502 3.9e-130 468.4 269 84.8
A08p16240 Brassica napus HOM05D006026 ORTHO05D007502 3.9e-130 468.4 269 84.8
BraA08t33594Z Brassica rapa HOM05D006026 ORTHO05D007502 3.9e-130 468.4 269 84.8
MBI08_g19978_MAGBIO Magnolia biondii HOM05D006026 ORTHO05D007502 3.9e-130 468.4 269 85.9
AT4G35250 Arabidopsis thaliana HOM05D006026 ORTHO05D007502 5.1e-130 468.0 269 85.1
CARHR243570 Cardamine hirsuta HOM05D006026 ORTHO05D007502 5.1e-130 468.0 269 85.1
SGA_v2.0_scaffold32G13334 Striga asiatica HOM05D006026 ORTHO05D007502 5.1e-130 468.0 269 84.8
HanXRQChr02g0049421 Helianthus annuus HOM05D006026 ORTHO05D007502 6.7e-130 467.6 268 83.6
vmacro02320 Vaccinium macrocarpon HOM05D006026 ORTHO05D007502 6.7e-130 467.6 269 84.4
Haze_02040 Corylus avellana HOM05D006026 ORTHO05D007502 8.7e-130 467.2 269 86.6
TWI79G1086 Tripterygium wilfordii HOM05D006026 ORTHO05D007502 1.1e-129 466.8 269 84.8
GSVIVG01023933001 Vitis vinifera HOM05D006026 ORTHO05D007502 1.1e-129 466.8 268 85.8
C03p84930 Brassica napus HOM05D006026 ORTHO05D007502 1.5e-129 466.5 269 84.4
BolC3t20785H Brassica oleracea HOM05D006026 ORTHO05D007502 1.5e-129 466.5 269 84.4
AL7G15930 Arabidopsis lyrata HOM05D006026 ORTHO05D007502 1.9e-129 466.1 269 85.1
Nn6g31746 Nelumbo nucifera HOM05D006026 ORTHO05D007502 1.9e-129 466.1 268 85.1
Os08g0553800 Oryza sativa ssp. japonica HOM05D006026 ORTHO05D007502 1.9e-129 466.1 269 83.3
Aa31LG2G14780 Aethionema arabicum HOM05D006026 ORTHO05D007502 2.5e-129 465.7 269 84.8
BcaB03g11776 Brassica carinata HOM05D006026 ORTHO05D007502 3.3e-129 465.3 269 84.0
Sabra04G0123100 Salix brachista HOM05D006026 ORTHO05D007502 3.3e-129 465.3 268 84.7
Sp7g33020 Schrenkiella parvula HOM05D006026 ORTHO05D007502 5.7e-129 464.5 269 84.8
CANSAT25G3515 Cannabis sativa HOM05D006026 ORTHO05D007502 7.4e-129 464.2 269 82.9
Lj5A173T64 Lonicera japonica HOM05D006026 ORTHO05D007502 7.4e-129 464.2 268 84.7
Thhalv10025389m.g Eutrema salsugineum HOM05D006026 ORTHO05D007502 9.7e-129 463.8 269 84.0
Migut.B00021 Erythranthe guttata HOM05D006026 ORTHO05D007502 2.8e-128 462.2 269 82.9
DCAR_015673 Daucus carota HOM05D006026 ORTHO05D007502 1.8e-127 459.5 268 83.2
TAR376G0854 Trochodendron aralioides HOM05D006026 ORTHO05D007502 1.8e-127 459.5 268 84.3
PSO541G6277 Papaver somniferum HOM05D006026 ORTHO05D007502 6.9e-127 457.6 268 83.2
PSO675G4706 Papaver somniferum HOM05D006026 ORTHO05D007502 6.9e-127 457.6 268 83.2
ATR0661G296 Amborella trichopoda HOM05D006026 ORTHO05D007502 2.0e-126 456.1 268 83.2
HPP92_025949 Vanilla planifolia HOM05D006026 ORTHO05D007502 2.0e-126 456.1 268 83.6
unitig_748.g7335 Utricularia gibba HOM05D006026 ORTHO05D007502 4.5e-126 454.9 269 83.3
Aqoxy6G01749 Aquilegia oxysepala HOM05D006026 ORTHO05D007502 2.2e-125 452.6 268 81.7
CDE05G1234 Ceratophyllum demersum HOM05D006026 ORTHO05D007502 2.2e-125 452.6 268 82.8
MELO3C013632.2 Cucumis melo HOM05D006026 ORTHO05D007502 4.7e-123 444.9 342 68.7
VMungo1309G0279 Vigna mungo HOM05D006026 ORTHO05D007502 1.8e-119 433.0 251 83.3
SMO011G0028 Selaginella moellendorffii HOM05D006026 ORTHO05D007502 5.5e-116 421.4 268 75.0
Mapoly0013s0111 Marchantia polymorpha HOM05D006026 ORTHO05D007502 6.1e-115 417.9 268 76.1
Zm00001eb039850 Zea mays HOM05D006026 ORTHO05D007502 2.8e-112 409.1 242 81.4
CDE05G3682 Ceratophyllum demersum HOM05D006026 ORTHO05D007502 8.2e-112 407.5 242 82.2
AagrBONN_evm.TU.Sc2ySwM_228.3661 Anthoceros agrestis HOM05D006026 ORTHO05D007502 5.3e-111 404.8 268 73.1
Pp3c27_8140 Physcomitrium patens HOM05D006026 ORTHO05D007502 4.5e-110 401.7 268 71.6
CBR_g37527 Chara braunii HOM05D006026 ORTHO05D007502 8.0e-107 391.0 264 70.8
AUR62027145 Chenopodium quinoa HOM05D006026 ORTHO05D007502 1.3e-104 383.6 271 73.4
Hma1.2p1_0271F.1_g109040 Hydrangea macrophylla HOM05D006026 ORTHO05D007502 3.7e-104 382.1 213 85.9
Hund00343 Selenicereus undatus HOM05D006026 ORTHO05D007502 1.2e-99 367.1 268 69.8
Haze_02283 Corylus avellana HOM05D006026 ORTHO05D007502 4.4e-81 305.4 164 88.4
Cre02.g142146 Chlamydomonas reinhardtii HOM05D006026 ORTHO05D007502 3.7e-80 302.4 271 55.0
MCO09G679 Micromonas commoda HOM05D006026 ORTHO05D007502 8.3e-80 301.2 264 52.7
PRCOL_00003008 Prasinoderma coloniale HOM05D006026 ORTHO05D007502 6.0e-78 295.0 282 53.9
Cc09_g10590 Coffea canephora HOM05D006026 ORTHO05D007502 1.9e-76 290.0 174 84.5
Glyma.06G001032 Glycine max HOM05D006026 ORTHO05D007502 6.4e-64 248.4 139 85.6
Cc09_g10600 Coffea canephora HOM05D006026 ORTHO05D007502 8.7e-45 184.9 110 77.3
SEGI_30501 Sequoiadendron giganteum HOM05D006026 ORTHO05D007502 1.8e-37 160.6 104 76.9
MD10G1137800 Malus domestica HOM05D006026 ORTHO05D007502 3.4e-33 146.4 138 56.5
MD10G1136300 Malus domestica HOM05D006026 ORTHO05D007502 3.0e-21 106.7 132 51.5
SGA_v2.0_scaffold13G06633 Striga asiatica HOM05D006026 ORTHO05D007502 5.1e-21 105.9 72 73.6
Nn5g30929 Nelumbo nucifera HOM05D006026 ORTHO05D007502 2.5e-20 103.6 56 80.4
MD10G1137300 Malus domestica HOM05D006026 ORTHO05D007502 8.2e-19 98.6 114 52.6
MD10G1134900 Malus domestica HOM05D006026 ORTHO05D007502 2.2e-16 90.5 52 76.9
Nn5g30928 Nelumbo nucifera HOM05D006026 ORTHO05D007502 1.1e-15 88.2 48 89.6
SEGI_27263 Sequoiadendron giganteum HOM05D006026 ORTHO05D007502 2.4e-10 70.5 34 94.1
CANSAT25G3470 Cannabis sativa HOM05D006026 ORTHO05D007502 5.3e-10 69.3 45 71.1
SGA_v2.0_scaffold7G03591 Striga asiatica HOM05D006026 ORTHO05D007502 1.9e-07 60.8 105 42.9


User provided reference genes

Program Settings