Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 2.9e-123 445.3 227 100.0
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 3.3e-103 378.6 227 81.5
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 8.9e-101 370.5 227 81.1
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 2.0e-100 369.4 227 80.2
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 2.2e-99 365.9 226 80.1
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 1.0e-96 357.1 227 76.2
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 1.6e-94 349.7 227 74.9
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 1.1e-93 347.1 225 76.9
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 1.8e-93 346.3 229 75.5
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 2.0e-92 342.8 226 74.3
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 2.6e-92 342.4 220 77.7
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 2.6e-92 342.4 218 77.5
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 9.9e-92 340.5 226 74.3
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 1.3e-91 340.1 227 73.1
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 1.3e-91 340.1 226 73.5
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 2.9e-91 339.0 226 73.0
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 2.9e-91 339.0 227 72.7
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 3.8e-91 338.6 231 74.0
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 4.9e-91 338.2 225 75.6
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 6.4e-91 337.8 221 76.5
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 8.4e-91 337.4 227 73.1
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 1.1e-90 337.0 227 71.8
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 1.1e-90 337.0 226 73.9
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 1.1e-90 337.0 227 71.8
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 2.4e-90 335.9 229 73.4
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 4.2e-90 335.1 227 71.8
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 5.4e-90 334.7 227 72.7
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 1.2e-89 333.6 229 72.9
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 1.6e-89 333.2 227 71.8
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 1.6e-89 333.2 226 71.7
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 1.6e-89 333.2 227 72.2
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 1.6e-89 333.2 226 70.8
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 1.6e-89 333.2 226 70.8
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 2.1e-89 332.8 216 74.1
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 2.1e-89 332.8 226 71.2
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 3.5e-89 332.0 216 74.1
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 3.5e-89 332.0 220 72.7
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 3.5e-89 332.0 227 70.5
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 3.5e-89 332.0 227 71.8
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 3.5e-89 332.0 216 73.6
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 4.6e-89 331.6 227 70.5
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 6.0e-89 331.3 220 72.3
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 1.0e-88 330.5 217 75.1
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.0e-88 330.5 226 73.9
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 1.3e-88 330.1 227 71.8
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 1.3e-88 330.1 227 74.0
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 1.3e-88 330.1 226 71.2
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 1.3e-88 330.1 219 73.1
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 1.7e-88 329.7 226 73.9
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 1.7e-88 329.7 226 72.1
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 2.3e-88 329.3 226 69.9
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 3.9e-88 328.6 227 74.0
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 3.9e-88 328.6 216 73.6
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 6.6e-88 327.8 227 70.0
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 6.6e-88 327.8 226 69.5
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 6.6e-88 327.8 227 70.0
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 8.7e-88 327.4 214 76.2
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 8.7e-88 327.4 219 76.7
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 1.1e-87 327.0 218 72.5
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 1.5e-87 326.6 227 69.6
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 1.5e-87 326.6 226 69.5
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.5e-87 326.6 226 73.0
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 1.9e-87 326.2 225 70.2
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 2.5e-87 325.9 226 69.0
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 2.5e-87 325.9 219 72.6
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 3.3e-87 325.5 226 70.8
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 4.3e-87 325.1 226 73.9
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 9.6e-87 323.9 219 71.2
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 2.1e-86 322.8 224 68.8
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 2.8e-86 322.4 225 73.3
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 3.6e-86 322.0 224 73.7
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 4.8e-86 321.6 224 71.0
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 4.8e-86 321.6 224 71.0
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 6.2e-86 321.2 218 70.2
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 6.2e-86 321.2 227 70.0
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 1.1e-85 320.5 219 73.1
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 1.1e-85 320.5 225 72.9
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 1.4e-85 320.1 219 72.6
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 1.4e-85 320.1 215 74.0
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 1.8e-85 319.7 223 69.1
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 4.0e-85 318.5 223 69.1
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 9.0e-85 317.4 223 68.6
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 9.0e-85 317.4 218 72.9
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 9.0e-85 317.4 219 73.1
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 9.0e-85 317.4 219 73.1
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 2.0e-84 316.2 219 72.6
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 2.6e-84 315.8 218 72.0
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 4.5e-84 315.1 219 71.2
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 4.5e-84 315.1 218 72.5
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 5.8e-84 314.7 235 69.4
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 9.9e-84 313.9 219 71.7
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 1.7e-83 313.2 220 71.8
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 2.2e-83 312.8 217 72.8
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 3.8e-83 312.0 219 69.9
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 4.9e-83 311.6 219 70.3
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 6.4e-83 311.2 219 70.8
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 1.1e-82 310.5 226 67.7
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 2.4e-82 309.3 215 69.8
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 3.5e-81 305.4 225 67.6
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 4.6e-81 305.1 222 70.7
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 7.9e-81 304.3 204 72.1
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 5.1e-80 301.6 210 68.6
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 6.7e-80 301.2 226 67.3
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.9e-79 299.7 226 68.1
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 1.9e-79 299.7 204 74.5
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 3.3e-79 298.9 204 71.1
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 5.6e-79 298.1 242 63.2
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 7.4e-79 297.7 206 68.9
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 7.4e-79 297.7 203 70.9
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.3e-78 297.0 214 70.1
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 2.8e-78 295.8 205 69.8
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 4.8e-78 295.0 230 65.7
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 6.2e-78 294.7 224 68.3
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 1.4e-77 293.5 209 67.5
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 4.0e-77 292.0 262 60.7
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 4.0e-77 292.0 202 69.8
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 4.0e-77 292.0 205 70.7
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 4.0e-77 292.0 203 70.9
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 1.5e-76 290.0 209 67.5
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 1.5e-76 290.0 209 67.5
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 5.8e-76 288.1 202 68.8
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 6.5e-75 284.6 204 67.6
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 1.9e-74 283.1 220 62.7
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.2e-73 280.4 203 68.5
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 2.1e-73 279.6 213 64.8
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 3.5e-73 278.9 211 64.5
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 6.0e-73 278.1 194 73.7
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 2.3e-72 276.2 211 67.8
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 3.3e-71 272.3 210 64.8
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 4.3e-71 271.9 202 67.3
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 2.1e-70 269.6 215 62.3
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 8.2e-70 267.7 221 64.3
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 1.8e-69 266.5 175 74.3
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 2.4e-69 266.2 227 62.6
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 4.5e-68 261.9 186 71.5
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 1.7e-67 260.0 214 64.0
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 5.5e-66 255.0 224 57.6
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 1.5e-63 246.9 221 57.5
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 8.2e-62 241.1 160 76.9
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 1.2e-60 237.3 225 55.6
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 1.5e-60 236.9 226 57.1
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 1.0e-59 234.2 151 79.5
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 1.3e-59 233.8 211 60.7
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.7e-59 233.4 231 55.4
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 8.5e-59 231.1 209 58.9
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 2.1e-57 226.5 159 69.8
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 6.1e-57 224.9 196 60.7
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 1.0e-56 224.2 213 55.4
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 3.0e-56 222.6 209 56.0
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 3.9e-56 222.2 214 54.7
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 7.4e-55 218.0 209 53.6
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.5e-52 210.3 220 53.6
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 3.4e-52 209.1 216 50.5
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 5.0e-51 205.3 183 60.7
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 3.6e-49 199.1 226 51.8
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 2.8e-38 162.9 238 41.6
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 4.8e-38 162.2 111 70.3
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 6.3e-38 161.8 117 70.1
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 1.4e-37 160.6 212 47.2
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.7e-35 153.7 233 40.8
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 1.1e-34 151.0 237 40.5
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 2.3e-32 143.3 217 40.6
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 4.0e-32 142.5 105 64.8
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 4.8e-30 135.6 99 67.7
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 2.4e-29 133.3 119 61.3
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 9.4e-26 121.3 114 59.6
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 3.6e-25 119.4 157 40.1
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 6.1e-25 118.6 78 76.9
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 5.9e-20 102.1 73 67.1
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 1.1e-18 97.8 83 61.4
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 7.5e-15 85.1 204 29.9
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 6.4e-14 82.0 73 56.2
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 1.6e-09 67.4 105 45.7
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 1.2e-07 61.2 77 51.9
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 2.6e-07 60.1 40 62.5
CBR_g3510 Chara braunii HOM05D003994 ORTHO05D043992 2.9e-06 56.6 71 39.4


User provided reference genes

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