Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p048977 Quercus lobata HOM05D009834 ORTHO05D338031 3.6e-126 454.9 226 100.0
QL05p079366 Quercus lobata HOM05D000013 ORTHO05D000011 8.8e-16 88.2 55 85.5
QL05p079259 Quercus lobata HOM05D000013 ORTHO05D050642 1.5e-15 87.4 57 82.5
QL11p048887 Quercus lobata HOM05D000013 ORTHO05D050642 1.3e-14 84.3 55 81.8
QL05p079206 Quercus lobata HOM05D000013 ORTHO05D000011 8.3e-14 81.6 55 80.0
QL11p048933 Quercus lobata HOM05D000013 ORTHO05D000011 8.3e-14 81.6 55 80.0
QL11p048983 Quercus lobata HOM05D000013 ORTHO05D022261 1.1e-13 81.3 54 75.9
QL05p079296 Quercus lobata HOM05D000013 ORTHO05D000011 4.1e-13 79.3 55 76.4
CiPaw.05G218800 Carya illinoinensis HOM05D000013 ORTHO05D000011 1.6e-12 77.4 64 67.2
CiPaw.05G241700 Carya illinoinensis HOM05D000013 ORTHO05D000011 1.6e-12 77.4 55 74.5
QL11p048962 Quercus lobata HOM05D000013 ORTHO05D000011 1.6e-12 77.4 55 78.2
QL05p079323 Quercus lobata HOM05D000013 ORTHO05D000011 4.5e-12 75.9 55 78.2
QL11p048809 Quercus lobata HOM05D000013 ORTHO05D000011 4.5e-12 75.9 55 78.2
QL01p024136 Quercus lobata HOM05D009834 ORTHO05D012892 7.7e-12 75.1 56 64.3
QL11p048988 Quercus lobata HOM05D000013 ORTHO05D000011 7.7e-12 75.1 58 72.4
Cfa000302 Carpinus fangiana HOM05D000013 ORTHO05D000011 1.3e-11 74.3 54 72.2
CiPaw.05G242500 Carya illinoinensis HOM05D000013 ORTHO05D000011 1.3e-11 74.3 55 70.9
QL11p048873 Quercus lobata HOM05D000013 ORTHO05D000011 1.3e-11 74.3 57 73.7
CiPaw.05G242300 Carya illinoinensis HOM05D000013 ORTHO05D000011 1.7e-11 73.9 55 72.7
CiPaw.05G242100 Carya illinoinensis HOM05D000013 ORTHO05D000011 2.2e-11 73.6 55 72.7
QL05p079268 Quercus lobata HOM05D000013 ORTHO05D000011 5.0e-11 72.4 55 76.4
Cfa000301 Carpinus fangiana HOM05D000013 ORTHO05D022261 1.9e-10 70.5 55 69.1
CiPaw.05G218600 Carya illinoinensis HOM05D000013 ORTHO05D000011 1.9e-10 70.5 64 62.5
QL05p004237 Quercus lobata HOM05D000013 ORTHO05D000011 7.2e-10 68.6 57 71.9
QL11p048857 Quercus lobata HOM05D000013 ORTHO05D000011 2.1e-09 67.0 55 70.9
QL05p004227 Quercus lobata HOM05D000013 ORTHO05D000011 5.2e-08 62.4 50 70.0
Manes.06G010700 Manihot esculenta HOM05D000013 ORTHO05D000011 2.0e-07 60.5 66 51.5
Manes.14G166100 Manihot esculenta HOM05D000013 ORTHO05D000011 2.0e-07 60.5 57 57.9
Prupe.4G032000 Prunus persica HOM05D000013 ORTHO05D000011 7.5e-07 58.5 56 55.4
MD05G1332000 Malus domestica HOM05D000013 ORTHO05D000011 9.8e-07 58.2 72 51.4
Prupe.8G209200 Prunus persica HOM05D000415 ORTHO05D002017 9.8e-07 58.2 46 73.9
Dinv43033 Davidia involucrata HOM05D000415 ORTHO05D002017 1.7e-06 57.4 46 73.9
QL05p055294 Quercus lobata HOM05D000148 ORTHO05D000081 1.7e-06 57.4 46 65.2
CiPaw.03G153200 Carya illinoinensis HOM05D000415 ORTHO05D002017 2.2e-06 57.0 46 71.7
THA.LOC104801055 Tarenaya hassleriana HOM05D000415 ORTHO05D002017 2.2e-06 57.0 46 71.7
AT1G11300 Arabidopsis thaliana HOM05D000013 ORTHO05D000011 2.8e-06 56.6 65 52.3
Manes.14G165606 Manihot esculenta HOM05D000013 ORTHO05D000011 2.8e-06 56.6 57 54.4
Manes.14G165624 Manihot esculenta HOM05D000013 ORTHO05D000011 2.8e-06 56.6 57 54.4
MD10G1307800 Malus domestica HOM05D000013 ORTHO05D000011 3.7e-06 56.2 54 57.4
Prupe.4G031900 Prunus persica HOM05D000013 ORTHO05D000011 3.7e-06 56.2 56 53.6
Sabra02G0192100 Salix brachista HOM05D000415 ORTHO05D002017 3.7e-06 56.2 46 71.7
Cpa.g.sc8.201 Carica papaya HOM05D000415 ORTHO05D002017 6.3e-06 55.5 46 71.7
Duzib212G0389 Durio zibethinus HOM05D000415 ORTHO05D002017 6.3e-06 55.5 46 71.7
Glyma.20G079300 Glycine max HOM05D000415 ORTHO05D002017 6.3e-06 55.5 46 71.7
Manes.03G155000 Manihot esculenta HOM05D000415 ORTHO05D002017 6.3e-06 55.5 46 71.7
Manes.06G010675 Manihot esculenta HOM05D000013 ORTHO05D000011 6.3e-06 55.5 57 50.9
Manes.S095212 Manihot esculenta HOM05D000013 ORTHO05D000011 6.3e-06 55.5 56 55.4
Thecc.04G215300 Theobroma cacao HOM05D000415 ORTHO05D002017 6.3e-06 55.5 46 71.7
Atru.ctg192_2.1 Acer truncatum HOM05D000415 ORTHO05D002017 8.3e-06 55.1 46 71.7
FvH4_2g19800 Fragaria vesca HOM05D000415 ORTHO05D002017 8.3e-06 55.1 50 64.0
FAN24G2934 Fragaria x ananassa HOM05D000415 ORTHO05D002017 8.3e-06 55.1 50 64.0
FAN27G0074 Fragaria x ananassa HOM05D000415 ORTHO05D002017 8.3e-06 55.1 50 64.0
Nn3g19860 Nelumbo nucifera HOM05D000415 ORTHO05D002017 8.3e-06 55.1 46 69.6
RcHm_v2.0_Chr6g0285501 Rosa chinensis HOM05D000415 ORTHO05D002017 8.3e-06 55.1 50 64.0


User provided reference genes

Program Settings