Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 8.6e-78 293.5 140 100.0
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 4.7e-52 208.0 137 73.7
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 4.7e-52 208.0 137 74.5
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 6.2e-52 207.6 137 75.2
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 1.8e-51 206.1 136 74.3
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 4.0e-51 204.9 137 73.7
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 6.8e-51 204.1 136 73.5
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 1.2e-50 203.4 137 71.5
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 9.9e-50 200.3 135 72.6
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 9.9e-50 200.3 135 72.6
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 1.3e-49 199.9 137 72.3
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 1.3e-49 199.9 137 71.5
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 2.9e-49 198.7 137 73.0
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 6.4e-49 197.6 137 69.3
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 6.4e-49 197.6 137 71.5
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 8.4e-49 197.2 136 71.3
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 8.4e-49 197.2 137 71.5
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 1.4e-48 196.4 135 69.6
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.9e-48 196.1 137 70.8
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 1.9e-48 196.1 137 69.3
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 2.4e-48 195.7 133 71.4
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 4.1e-48 194.9 137 70.8
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 4.1e-48 194.9 135 70.4
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.4e-48 194.5 137 70.1
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 5.4e-48 194.5 134 70.9
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 5.4e-48 194.5 132 72.7
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 7.1e-48 194.1 135 69.6
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 7.1e-48 194.1 136 70.6
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 7.1e-48 194.1 136 69.1
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 9.2e-48 193.7 137 69.3
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 1.6e-47 193.0 137 70.1
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 2.1e-47 192.6 135 70.4
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.1e-47 192.6 137 69.3
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 2.7e-47 192.2 137 70.1
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.7e-47 192.2 137 69.3
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 2.7e-47 192.2 137 69.3
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 3.5e-47 191.8 135 68.9
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 3.5e-47 191.8 136 69.9
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 3.5e-47 191.8 136 70.6
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 6.0e-47 191.0 133 68.4
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 6.0e-47 191.0 137 69.3
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 6.0e-47 191.0 135 68.9
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 7.8e-47 190.7 137 69.3
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 7.8e-47 190.7 137 69.3
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 7.8e-47 190.7 133 69.9
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.0e-46 190.3 135 68.1
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 1.0e-46 190.3 129 72.9
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 1.3e-46 189.9 137 67.9
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 1.3e-46 189.9 129 72.1
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 1.3e-46 189.9 180 57.2
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 1.7e-46 189.5 137 67.2
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 2.3e-46 189.1 137 69.3
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 2.3e-46 189.1 132 68.9
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 3.9e-46 188.3 135 68.9
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 8.6e-46 187.2 132 69.7
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 1.1e-45 186.8 137 67.2
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 3.3e-45 185.3 135 68.1
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 5.6e-45 184.5 135 68.1
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 7.3e-45 184.1 137 66.4
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 7.3e-45 184.1 139 66.9
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 9.6e-45 183.7 137 65.7
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 9.6e-45 183.7 137 65.7
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 9.6e-45 183.7 137 65.7
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 9.6e-45 183.7 137 65.7
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 1.2e-44 183.3 137 65.7
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 1.2e-44 183.3 136 66.9
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 1.6e-44 183.0 137 67.9
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.6e-44 183.0 136 65.4
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 2.1e-44 182.6 137 65.7
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 2.1e-44 182.6 137 65.7
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 2.8e-44 182.2 133 66.9
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 2.8e-44 182.2 133 67.7
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 3.6e-44 181.8 136 64.7
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 3.6e-44 181.8 137 65.0
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 3.6e-44 181.8 137 65.0
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 3.6e-44 181.8 136 66.2
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 3.6e-44 181.8 136 66.2
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 4.7e-44 181.4 132 67.4
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 6.2e-44 181.0 137 65.0
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 6.2e-44 181.0 137 65.7
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 6.2e-44 181.0 135 66.7
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 6.2e-44 181.0 134 63.4
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 6.2e-44 181.0 137 66.4
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 1.4e-43 179.9 137 64.2
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 2.4e-43 179.1 137 63.5
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 2.4e-43 179.1 137 63.5
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 2.4e-43 179.1 137 63.5
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 2.4e-43 179.1 137 63.5
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 2.4e-43 179.1 137 63.5
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 3.1e-43 178.7 136 64.7
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 3.1e-43 178.7 137 66.4
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 5.2e-43 177.9 136 64.0
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 5.2e-43 177.9 136 64.0
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 8.9e-43 177.2 137 64.2
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 1.2e-42 176.8 133 64.7
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 1.2e-42 176.8 133 64.7
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 2.6e-42 175.6 136 63.2
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 3.4e-42 175.3 137 62.8
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 7.6e-42 174.1 137 64.2
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 1.3e-41 173.3 137 63.5
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 6.4e-41 171.0 136 60.3
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 8.4e-41 170.6 123 69.1
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 1.9e-40 169.5 134 62.7
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 4.2e-40 168.3 118 71.2
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 4.2e-40 168.3 126 65.9
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 5.4e-40 167.9 152 60.5
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 1.2e-39 166.8 137 61.3
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.2e-39 166.8 125 66.4
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 2.7e-39 165.6 133 60.9
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 6.0e-39 164.5 137 61.3
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 7.8e-39 164.1 140 58.6
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 5.1e-38 161.4 131 60.3
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 8.7e-38 160.6 128 62.5
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 8.7e-38 160.6 127 60.6
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 1.9e-37 159.5 128 61.7
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 3.3e-37 158.7 136 57.4
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 7.3e-37 157.5 127 62.2
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 9.6e-37 157.1 125 63.2
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 1.5e-34 149.8 122 61.5
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 1.4e-32 143.3 138 55.8
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 9.3e-32 140.6 112 64.3
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 2.3e-30 136.0 137 51.8
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.9e-29 132.9 136 52.9
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 5.6e-29 131.3 133 47.4
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 1.4e-27 126.7 132 48.5
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 2.6e-26 122.5 106 60.4
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 2.2e-25 119.4 63 79.4
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 2.2e-25 119.4 137 48.2
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 6.4e-25 117.9 59 84.7
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 4.6e-23 111.7 61 75.4
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 3.0e-22 109.0 128 43.0
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 3.3e-21 105.5 137 40.9
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 6.2e-20 101.3 124 43.5
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 6.2e-20 101.3 126 42.9
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.8e-19 99.8 106 52.8
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 2.4e-19 99.4 59 72.9
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 7.6e-18 94.4 81 56.8
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 1.7e-17 93.2 154 41.6
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 4.9e-17 91.7 62 77.4
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 1.9e-16 89.7 59 74.6
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 2.7e-15 85.9 120 39.2
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 3.5e-15 85.5 60 70.0
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 4.3e-13 78.6 134 36.6
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 2.8e-12 75.9 59 67.8
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 1.0e-09 67.4 76 46.1
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 1.6e-07 60.1 68 44.1
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 8.7e-06 54.3 118 28.8


User provided reference genes

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