Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p046076 Quercus lobata HOM05D001544 ORTHO05D005712 1.2e-112 409.8 206 100.0
CiPaw.06G128900 Carya illinoinensis HOM05D001544 ORTHO05D005712 5.8e-83 311.2 206 77.2
Prupe.8G085800 Prunus persica HOM05D001544 ORTHO05D005712 1.6e-77 293.1 206 73.3
MELO3C023351.2 Cucumis melo HOM05D001544 ORTHO05D005712 3.1e-76 288.9 198 73.7
CsaV3_2G015260 Cucumis sativus L. HOM05D001544 ORTHO05D005712 2.0e-75 286.2 198 72.2
Sed0017058 Sechium edule HOM05D001544 ORTHO05D005712 2.9e-74 282.3 178 77.0
Cfa005097 Carpinus fangiana HOM05D001544 ORTHO05D005712 2.1e-72 276.2 206 68.0
Nn5g29207 Nelumbo nucifera HOM05D001544 ORTHO05D002732 2.3e-71 272.7 184 71.2
MD10G1064100 Malus domestica HOM05D001544 ORTHO05D005712 6.7e-71 271.2 176 73.3
ClCG11G003920 Citrullus lanatus HOM05D001544 ORTHO05D005712 1.3e-69 266.9 198 69.7
GSVIVG01024183001 Vitis vinifera HOM05D001544 ORTHO05D005712 2.2e-69 266.2 195 69.2
Sed0002010 Sechium edule HOM05D001544 ORTHO05D005712 8.2e-69 264.2 199 66.3
Atru.chr5.3135 Acer truncatum HOM05D001544 ORTHO05D005712 6.9e-68 261.2 222 60.8
CANSAT11G1780 Cannabis sativa HOM05D001544 ORTHO05D005712 1.7e-66 256.5 189 69.8
Thecc.02G076200 Theobroma cacao HOM05D001544 ORTHO05D005712 9.4e-65 250.8 191 66.0
Sc03g0003410 Simmondsia chinensis HOM05D001544 ORTHO05D005712 1.6e-64 250.0 205 63.9
Eucgr.G01724 Eucalyptus grandis HOM05D001544 ORTHO05D005712 3.6e-64 248.8 180 68.9
TAR625G1395 Trochodendron aralioides HOM05D001544 ORTHO05D005712 3.6e-64 248.8 185 67.0
FvH4_2g10310 Fragaria vesca HOM05D001544 ORTHO05D005712 7.9e-64 247.7 194 66.0
PGR042G1893 Punica granatum HOM05D001544 ORTHO05D005712 7.9e-64 247.7 179 69.3
Duzib132G0442 Durio zibethinus HOM05D001544 ORTHO05D005712 1.0e-63 247.3 175 71.4
RcHm_v2.0_Chr6g0267511 Rosa chinensis HOM05D001544 ORTHO05D005712 1.0e-63 247.3 196 68.9
Aqoxy5G01497 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 3.0e-63 245.7 175 66.3
FAN15G2093 Fragaria x ananassa HOM05D001544 ORTHO05D005712 3.9e-63 245.4 194 64.9
Lj3g0003276 Lotus japonicus HOM05D001544 ORTHO05D005712 6.7e-63 244.6 179 65.4
TWI75G0115 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 6.7e-63 244.6 206 62.6
Gohir.D02G220200 Gossypium hirsutum HOM05D001544 ORTHO05D005712 8.8e-63 244.2 180 69.4
Gorai.005G248100 Gossypium raimondii HOM05D001544 ORTHO05D005712 8.8e-63 244.2 180 69.4
Lalb_Chr01g0002161 Lupinus albus HOM05D001544 ORTHO05D005712 2.0e-62 243.0 211 61.6
Ciclev10029261m.g Citrus clementina HOM05D001544 ORTHO05D005712 3.3e-62 242.3 181 67.4
TWI79G0125 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 4.4e-62 241.9 184 65.8
FAN20G3124 Fragaria x ananassa HOM05D001544 ORTHO05D005712 7.4e-62 241.1 201 63.7
Gohir.A03G198800 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.3e-61 240.4 180 68.9
Dinv40055 Davidia involucrata HOM05D001544 ORTHO05D005712 3.1e-60 235.7 176 65.9
FAN24G0484 Fragaria x ananassa HOM05D001544 ORTHO05D005712 4.5e-59 231.9 222 58.1
Hund14027 Selenicereus undatus HOM05D001544 ORTHO05D005712 4.5e-59 231.9 215 57.7
QL06p034007 Quercus lobata HOM05D001544 ORTHO05D005712 1.7e-58 229.9 186 63.4
Cpa.g.sc6.211 Carica papaya HOM05D001544 ORTHO05D005712 2.1e-56 223.0 191 59.7
Hma1.2p1_0266F.1_g106940 Hydrangea macrophylla HOM05D001544 ORTHO05D005712 2.1e-56 223.0 169 63.3
Phvul.011G039500 Phaseolus vulgaris HOM05D001544 ORTHO05D005712 4.7e-56 221.9 173 64.7
Psat7g226160 Pisum sativum HOM05D001544 ORTHO05D005712 1.0e-55 220.7 178 58.4
arahy.Tifrunner.gnm1.ann1.3WL649 Arachis hypogaea HOM05D001544 ORTHO05D005712 2.3e-55 219.5 195 56.9
HanXRQChr13g0414781 Helianthus annuus HOM05D001544 ORTHO05D005712 3.0e-55 219.2 195 55.4
Glyma.11G111600 Glycine max HOM05D001544 ORTHO05D005712 6.7e-55 218.0 172 64.5
MSTRG.23282 Avicennia marina HOM05D001544 ORTHO05D005712 8.8e-55 217.6 183 60.7
Potri.007G016200 Populus trichocarpa HOM05D001544 ORTHO05D005712 1.1e-54 217.2 185 60.0
Manes.01G142600 Manihot esculenta HOM05D001544 ORTHO05D005712 1.5e-54 216.9 180 63.3
SEGI_21342 Sequoiadendron giganteum HOM05D001544 ORTHO05D005712 1.5e-54 216.9 183 58.5
PSO210G7387 Papaver somniferum HOM05D001544 ORTHO05D005712 3.3e-54 215.7 179 58.7
CSS0013177 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 1.7e-53 213.4 174 62.6
Manes.02G100900 Manihot esculenta HOM05D001544 ORTHO05D005712 1.7e-53 213.4 210 55.2
Potri.005G117400 Populus trichocarpa HOM05D001544 ORTHO05D005712 2.8e-53 212.6 185 58.9
HanXRQChr14g0441601 Helianthus annuus HOM05D001544 ORTHO05D005712 6.3e-53 211.5 195 56.4
Glyma.01G006900 Glycine max HOM05D001544 ORTHO05D005712 1.1e-52 210.7 172 61.6
Medtr4g032740 Medicago truncatula HOM05D001544 ORTHO05D005712 1.1e-52 210.7 214 52.3
THA.LOC104821318 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 1.4e-52 210.3 178 56.2
Oeu021945.1 Olea europaea HOM05D001544 ORTHO05D005712 1.8e-52 209.9 179 59.2
Lsat_1_v5_gn_2_78361 Lactuca sativa HOM05D001544 ORTHO05D005712 2.4e-52 209.5 219 52.1
Carub.0005s1750 Capsella rubella HOM05D001544 ORTHO05D005712 3.1e-52 209.1 178 58.4
Nitab4.5_0010830g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 3.1e-52 209.1 186 58.1
Rhsim10G0214300 Rhododendron simsii HOM05D001544 ORTHO05D005712 7.0e-52 208.0 216 54.6
PGSC0003DMG401022539 Solanum tuberosum HOM05D001544 ORTHO05D005712 3.5e-51 205.7 176 58.0
TPR.G34176 Trifolium pratense HOM05D001544 ORTHO05D005712 3.5e-51 205.7 177 57.1
CARHR160690 Cardamine hirsuta HOM05D001544 ORTHO05D005712 7.7e-51 204.5 181 56.9
Nitab4.5_0000753g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 7.7e-51 204.5 179 59.8
AT3G51100 Arabidopsis thaliana HOM05D001544 ORTHO05D005712 1.0e-50 204.1 184 56.0
Solyc03g033650.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 6.5e-50 201.4 175 56.0
Sp5g11110 Schrenkiella parvula HOM05D001544 ORTHO05D005712 1.5e-49 200.3 189 56.6
Lj3g0002354 Lotus japonicus HOM05D001544 ORTHO05D005712 3.2e-49 199.1 176 55.7
Migut.L00036 Erythranthe guttata HOM05D001544 ORTHO05D005712 4.2e-49 198.7 180 53.3
PSO541G2534 Papaver somniferum HOM05D001544 ORTHO05D005712 7.2e-49 198.0 212 50.0
PSO675G4981 Papaver somniferum HOM05D001544 ORTHO05D005712 7.2e-49 198.0 208 51.0
Sopen03g006440 Solanum pennellii HOM05D001544 ORTHO05D005712 7.2e-49 198.0 175 54.9
Aqoxy6G02390 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 9.4e-49 197.6 181 52.5
AL5G31520 Arabidopsis lyrata HOM05D001544 ORTHO05D005712 3.6e-48 195.7 186 54.3
Os06g0713900 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 4.7e-48 195.3 175 52.6
VMungo1127G0458 Vigna mungo HOM05D001544 ORTHO05D005712 4.7e-48 195.3 170 57.6
Aa31LG4G19200 Aethionema arabicum HOM05D001544 ORTHO05D005712 6.1e-48 194.9 184 52.7
Thhalv10010713m.g Eutrema salsugineum HOM05D001544 ORTHO05D005712 1.0e-47 194.1 184 53.8
DCAR_025988 Daucus carota HOM05D001544 ORTHO05D005712 1.4e-47 193.7 207 50.2
CSS0007563 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 1.8e-47 193.4 154 62.3
ECA238G2610 Erigeron canadensis HOM05D002906 ORTHO05D003211 2.3e-47 193.0 168 54.2
CiPaw.07G055800 Carya illinoinensis HOM05D001544 ORTHO05D005712 8.8e-47 191.0 210 49.0
SGA_v2.0_scaffold51G18782 Striga asiatica HOM05D001544 ORTHO05D005712 4.4e-46 188.7 182 55.5
SalBow8G0407 Salvia bowleyana HOM05D001544 ORTHO05D005712 5.7e-46 188.3 225 43.6
RcHm_v2.0_Chr2g0099951 Rosa chinensis HOM05D001544 ORTHO05D005712 9.7e-46 187.6 191 53.9
SGA_v2.0_scaffold2G01246 Striga asiatica HOM05D001544 ORTHO05D005712 1.7e-45 186.8 203 50.7
C07p46160 Brassica napus HOM05D001544 ORTHO05D005712 3.7e-45 185.7 222 47.3
BolC7t45132H Brassica oleracea HOM05D001544 ORTHO05D005712 3.7e-45 185.7 222 47.3
A03p48120 Brassica napus HOM05D001544 ORTHO05D005712 4.8e-45 185.3 220 47.7
BraA03t13919Z Brassica rapa HOM05D001544 ORTHO05D005712 4.8e-45 185.3 220 47.7
BcaC06g33056 Brassica carinata HOM05D001544 ORTHO05D005712 1.1e-44 184.1 220 47.3
vmacro22095 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 1.1e-44 184.1 231 48.5
PGSC0003DMG402003620 Solanum tuberosum HOM05D001544 ORTHO05D005712 1.4e-44 183.7 179 53.1
Migut.H02483 Erythranthe guttata HOM05D001544 ORTHO05D005712 7.0e-44 181.4 171 52.0
Zm00001eb227920 Zea mays HOM05D001544 ORTHO05D005712 7.0e-44 181.4 176 50.0
Dinv23461 Davidia involucrata HOM05D001544 ORTHO05D005712 2.0e-43 179.9 141 65.2
Lalb_Chr19g0138931 Lupinus albus HOM05D001544 ORTHO05D005712 3.5e-43 179.1 168 53.0
Prupe.7G164800 Prunus persica HOM05D001544 ORTHO05D005712 5.9e-43 178.3 184 52.7
Sopen02g029220 Solanum pennellii HOM05D001544 ORTHO05D005712 7.7e-43 177.9 186 50.5
Solyc02g084550.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 1.0e-42 177.6 186 50.5
Haze_03811 Corylus avellana HOM05D001544 ORTHO05D005712 2.2e-42 176.4 232 46.1
MD02G1135800 Malus domestica HOM05D001544 ORTHO05D005712 2.9e-42 176.0 186 51.6
MD15G1249400 Malus domestica HOM05D001544 ORTHO05D005712 1.5e-41 173.7 186 50.0
Cc07_g10380 Coffea canephora HOM05D001544 ORTHO05D005712 9.4e-41 171.0 138 59.4
arahy.Tifrunner.gnm1.ann1.3TM7ML Arachis hypogaea HOM05D001544 ORTHO05D005712 2.7e-40 169.5 154 55.8
Zm00001eb103400 Zea mays HOM05D001544 ORTHO05D005712 1.8e-39 166.8 207 43.0
unitig_0.g2167 Utricularia gibba HOM05D001544 ORTHO05D005712 2.3e-39 166.4 190 47.9
Peaxi162Scf00010g00610 Petunia axillaris HOM05D001544 ORTHO05D005712 1.2e-38 164.1 181 49.2
vmacro21904 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 2.0e-38 163.3 167 53.3
Cfa006938 Carpinus fangiana HOM05D001544 ORTHO05D005712 7.5e-38 161.4 137 58.4
HPP92_022282 Vanilla planifolia HOM05D001544 ORTHO05D005712 7.5e-38 161.4 162 51.2
THA.LOC104826761 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 2.2e-37 159.8 179 44.1
MBI14_g19731_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 2.8e-37 159.5 181 50.3
EL10As8g23856 Beta vulgaris HOM05D001544 ORTHO05D005712 1.4e-36 157.1 314 36.0
Ca_19707_v3 Cicer arietinum L. HOM05D001544 ORTHO05D005712 9.1e-36 154.5 149 53.7
Rhsim08G0035500 Rhododendron simsii HOM05D001544 ORTHO05D005712 4.5e-35 152.1 152 52.0
Oeu037732.1 Olea europaea HOM05D001544 ORTHO05D005712 1.7e-34 150.2 132 62.1
PSO170G3698 Papaver somniferum HOM05D001544 ORTHO05D005712 5.0e-34 148.7 114 58.8
arahy.Tifrunner.gnm1.ann1.N6BS4T Arachis hypogaea HOM05D001544 ORTHO05D005712 8.6e-34 147.9 98 69.4
Dinv42006 Davidia involucrata HOM05D001544 ORTHO05D002732 3.3e-33 146.0 200 46.5
Lj4A214G24 Lonicera japonica HOM05D001544 ORTHO05D005712 3.3e-33 146.0 108 63.9
Mapoly0074s0044 Marchantia polymorpha HOM05D001544 ORTHO05D005712 9.5e-33 144.4 190 43.7
Thecc.01G023700 Theobroma cacao HOM05D001544 ORTHO05D005712 4.7e-32 142.1 166 45.2
Sabra05G0096400 Salix brachista HOM05D001544 ORTHO05D005712 1.4e-31 140.6 210 43.8
Gohir.D11G185900 Gossypium hirsutum HOM05D001544 ORTHO05D005712 6.8e-31 138.3 188 39.9
Dinv33599 Davidia involucrata HOM05D001544 ORTHO05D005712 1.5e-30 137.1 93 66.7
CDE12G0819 Ceratophyllum demersum HOM05D001544 ORTHO05D002732 2.0e-30 136.7 154 50.6
Gohir.A11G178100 Gossypium hirsutum HOM05D001544 ORTHO05D005712 2.0e-30 136.7 192 39.6
Gorai.007G197500 Gossypium raimondii HOM05D001544 ORTHO05D005712 2.0e-30 136.7 193 38.9
FAN26G2191 Fragaria x ananassa HOM05D001544 ORTHO05D005712 4.4e-30 135.6 195 44.1
FAN28G0278 Fragaria x ananassa HOM05D001544 ORTHO05D005712 4.9e-29 132.1 194 44.3
FAN23G1654 Fragaria x ananassa HOM05D002906 ORTHO05D003211 6.3e-29 131.7 193 44.6
Sabra07G0013400 Salix brachista HOM05D001544 ORTHO05D005712 6.3e-29 131.7 265 34.3
TAR381G0232 Trochodendron aralioides HOM05D001544 ORTHO05D005712 1.7e-26 123.6 103 58.3
SMO361G0705 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 4.3e-25 119.0 176 39.2
Os09g0530700 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 5.6e-25 118.6 97 55.7
FvH4_1g12190 Fragaria vesca HOM05D001544 ORTHO05D005712 4.7e-24 115.5 179 43.0
CARHR160680 Cardamine hirsuta HOM05D001544 ORTHO05D005712 6.1e-24 115.2 185 38.9
SMO004G0024 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 8.0e-24 114.8 192 38.0
Thecc.01G023500 Theobroma cacao HOM05D001544 ORTHO05D005712 1.8e-23 113.6 134 44.8
Zm00001eb319500 Zea mays HOM05D001544 ORTHO05D005712 1.8e-23 113.6 136 43.4
MBI14_g19737_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 6.8e-23 111.7 77 67.5
Pp3c3_3130 Physcomitrium patens HOM05D001544 ORTHO05D005712 6.8e-23 111.7 198 34.3
Pp3c14_16330 Physcomitrium patens HOM05D001544 ORTHO05D005712 1.3e-21 107.5 170 39.4
Pp3c26_11470 Physcomitrium patens HOM05D001544 ORTHO05D005712 1.7e-21 107.1 191 33.0
FAN23G2664 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.2e-21 106.7 136 49.3
AagrBONN_evm.TU.Sc2ySwM_362.490 Anthoceros agrestis HOM05D001544 ORTHO05D005712 1.1e-17 94.4 116 44.0
PSO675G0307 Papaver somniferum HOM05D001544 ORTHO05D005712 4.3e-17 92.4 119 43.7
QL03p008887 Quercus lobata HOM05D001544 ORTHO05D005712 8.0e-16 88.2 64 75.0
Actinidia23006 Actinidia chinensis HOM05D001544 ORTHO05D005712 1.4e-15 87.4 58 67.2
MBI14_g19736_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 3.4e-14 82.8 56 67.9
CBR_g12214 Chara braunii HOM05D068249 ORTHO05D005712 4.9e-13 79.0 239 27.2
HPP92_028379 Vanilla planifolia HOM05D001544 ORTHO05D005712 1.1e-09 67.8 131 35.1
TAR626G0405 Trochodendron aralioides HOM05D000010 ORTHO05D016350 3.1e-07 59.7 42 66.7
CBR_g17049 Chara braunii HOM05D068249 ORTHO05D005712 6.8e-07 58.5 188 25.0
SEGI_09349 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 4.4e-06 55.8 48 58.3


User provided reference genes

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