Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p044525 Quercus lobata HOM05D003534 ORTHO05D015840 7.7e-15 83.6 80 100.0
QL11p044502 Quercus lobata HOM05D003534 ORTHO05D004911 8.5e-14 80.1 79 98.7
Glyma.12G042600 Glycine max HOM05D003534 ORTHO05D004911 9.7e-10 66.6 40 85.0
arahy.Tifrunner.gnm1.ann1.32LR34 Arachis hypogaea HOM05D003534 ORTHO05D004911 1.7e-09 65.9 40 85.0
VMungo1127G1107 Vigna mungo HOM05D003534 ORTHO05D004911 8.2e-09 63.5 40 82.5
arahy.Tifrunner.gnm1.ann1.HU7T3D Arachis hypogaea HOM05D003534 ORTHO05D004911 1.4e-08 62.8 40 82.5
CiPaw.05G066400 Carya illinoinensis HOM05D003534 ORTHO05D004911 1.4e-08 62.8 44 81.8
ClCG11G004310 Citrullus lanatus HOM05D003534 ORTHO05D004911 1.4e-08 62.8 42 78.6
MELO3C023306.2 Cucumis melo HOM05D003534 ORTHO05D004911 1.4e-08 62.8 42 78.6
CsaV3_2G014840 Cucumis sativus L. HOM05D003534 ORTHO05D004911 1.4e-08 62.8 42 78.6
ECA234G0458 Erigeron canadensis HOM05D003534 ORTHO05D004911 1.4e-08 62.8 49 73.5
Glyma.11G116800 Glycine max HOM05D003534 ORTHO05D004911 1.8e-08 62.4 40 80.0
Cc02_g17370 Coffea canephora HOM05D003534 ORTHO05D004911 2.4e-08 62.0 42 78.6
Phvul.011G044300 Phaseolus vulgaris HOM05D003534 ORTHO05D004911 2.4e-08 62.0 40 80.0
Lalb_Chr03g0025601 Lupinus albus HOM05D003534 ORTHO05D004911 3.1e-08 61.6 40 80.0
MBI16_g05475_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D004911 3.1e-08 61.6 39 84.6
Lalb_Chr01g0002481 Lupinus albus HOM05D003534 ORTHO05D004911 5.3e-08 60.8 40 80.0
SGA_v2.0_scaffold58G20518 Striga asiatica HOM05D003534 ORTHO05D004911 5.3e-08 60.8 40 80.0
COL.COLO4_25955 Corchorus olitorius HOM05D003534 ORTHO05D015840 7.0e-08 60.5 40 80.0
Nn3g20273 Nelumbo nucifera HOM05D003534 ORTHO05D004911 7.0e-08 60.5 40 82.5
Gohir.A03G195500 Gossypium hirsutum HOM05D003534 ORTHO05D004911 9.1e-08 60.1 39 79.5
MSTRG.27693 Avicennia marina HOM05D003534 ORTHO05D004911 1.2e-07 59.7 42 73.8
Duzib132G0318 Durio zibethinus HOM05D003534 ORTHO05D004911 1.2e-07 59.7 40 80.0
Lj3g0020150 Lotus japonicus HOM05D003534 ORTHO05D004911 1.6e-07 59.3 40 77.5
Psat7g184360 Pisum sativum HOM05D003534 ORTHO05D004911 1.6e-07 59.3 39 79.5
TAR376G0939 Trochodendron aralioides HOM05D003534 ORTHO05D004911 1.6e-07 59.3 40 80.0
CDE06G2567 Ceratophyllum demersum HOM05D003534 ORTHO05D004911 2.0e-07 58.9 41 75.6
Eucgr.I01280 Eucalyptus grandis HOM05D003534 ORTHO05D004911 2.0e-07 58.9 39 82.1
PGR142G3854 Punica granatum HOM05D003534 ORTHO05D004911 2.0e-07 58.9 40 77.5
Ciclev10027844m.g Citrus clementina HOM05D003534 ORTHO05D004911 2.7e-07 58.5 40 77.5
Manes.04G089300 Manihot esculenta HOM05D003534 ORTHO05D004911 2.7e-07 58.5 40 77.5
Actinidia00534 Actinidia chinensis HOM05D003534 ORTHO05D004911 3.5e-07 58.2 40 80.0
Cpa.g.sc62.164 Carica papaya HOM05D003534 ORTHO05D004911 3.5e-07 58.2 42 76.2
Cpa.g.sc62.168 Carica papaya HOM05D003534 ORTHO05D015840 3.5e-07 58.2 42 76.2
CDE08G0557 Ceratophyllum demersum HOM05D003534 ORTHO05D004911 3.5e-07 58.2 41 78.0
Gohir.D02G216500 Gossypium hirsutum HOM05D003534 ORTHO05D004911 4.5e-07 57.8 39 76.9
Gorai.005G244600 Gossypium raimondii HOM05D003534 ORTHO05D004911 4.5e-07 57.8 39 76.9
Nn8g40768 Nelumbo nucifera HOM05D003534 ORTHO05D004911 5.9e-07 57.4 39 79.5
Peaxi162Scf00314g00224 Petunia axillaris HOM05D003534 ORTHO05D004911 5.9e-07 57.4 38 81.6
SalBow3G2606 Salvia bowleyana HOM05D003534 ORTHO05D004911 5.9e-07 57.4 42 73.8
Thecc.02G083000 Theobroma cacao HOM05D003534 ORTHO05D004911 5.9e-07 57.4 40 77.5
CAN.G616.17 Capsicum annuum HOM05D003534 ORTHO05D015840 7.7e-07 57.0 44 75.0
Medtr4g078640 Medicago truncatula HOM05D003534 ORTHO05D004911 7.7e-07 57.0 39 76.9
Sed0008343 Sechium edule HOM05D003534 ORTHO05D004911 7.7e-07 57.0 42 73.8
CSS0034094 Camellia sinensis var. sinensis HOM05D003534 ORTHO05D004911 1.0e-06 56.6 40 75.0
HanXRQChr12g0376181 Helianthus annuus HOM05D003534 ORTHO05D004911 1.0e-06 56.6 49 65.3
MBI16_g07725_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D000385 1.0e-06 56.6 39 79.5
Medtr4g070380 Medicago truncatula HOM05D003534 ORTHO05D004911 1.0e-06 56.6 39 74.4
Nitab4.5_0007066g0010 Nicotiana tabacum HOM05D003534 ORTHO05D004911 1.0e-06 56.6 38 78.9
HPP92_017536 Vanilla planifolia HOM05D003534 ORTHO05D004911 1.0e-06 56.6 42 78.6
Lj4C693T2 Lonicera japonica HOM05D003534 ORTHO05D004911 1.3e-06 56.2 42 76.2
PSO541G3604 Papaver somniferum HOM05D003534 ORTHO05D004911 1.3e-06 56.2 41 80.5
PSO675G2831 Papaver somniferum HOM05D003534 ORTHO05D004911 1.3e-06 56.2 41 80.5
SMO361G0029 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 1.3e-06 56.2 38 78.9
SMO361G0155 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 1.3e-06 56.2 38 78.9
SMO361G0409 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 1.3e-06 56.2 38 78.9
Nitab4.5_0000167g0310 Nicotiana tabacum HOM05D003534 ORTHO05D004911 1.7e-06 55.8 47 70.2
Nitab4.5_0003010g0010 Nicotiana tabacum HOM05D003534 ORTHO05D004911 1.7e-06 55.8 44 75.0
Ca_20885_v3 Cicer arietinum L. HOM05D003534 ORTHO05D004911 2.2e-06 55.5 38 73.7
unitig_21.g20784 Utricularia gibba HOM05D003534 ORTHO05D004911 2.2e-06 55.5 42 76.2
Hma1.2p1_0617F.1_g190140 Hydrangea macrophylla HOM05D003534 ORTHO05D004911 2.9e-06 55.1 46 69.6
Nitab4.5_0000231g0480 Nicotiana tabacum HOM05D003534 ORTHO05D004911 2.9e-06 55.1 38 76.3
PGSC0003DMG400020972 Solanum tuberosum HOM05D003534 ORTHO05D004911 2.9e-06 55.1 35 80.0
ATR0579G086 Amborella trichopoda HOM05D003534 ORTHO05D015840 3.8e-06 54.7 42 71.4
Sabra09G0090700 Salix brachista HOM05D003534 ORTHO05D004911 3.8e-06 54.7 40 80.0
Sopen10g016790 Solanum pennellii HOM05D003534 ORTHO05D004911 3.8e-06 54.7 46 69.6
SEGI_04005 Sequoiadendron giganteum HOM05D003534 ORTHO05D004911 5.0e-06 54.3 41 73.2
SEGI_39659 Sequoiadendron giganteum HOM05D003534 ORTHO05D004911 5.0e-06 54.3 41 73.2
ATR0568G003 Amborella trichopoda HOM05D003534 ORTHO05D004911 6.5e-06 53.9 43 72.1
Potri.009G118400 Populus trichocarpa HOM05D003534 ORTHO05D004911 6.5e-06 53.9 40 80.0
Sc22g0003200 Simmondsia chinensis HOM05D003534 ORTHO05D004911 6.5e-06 53.9 41 75.6
CAN.G259.5 Capsicum annuum HOM05D003534 ORTHO05D004911 8.5e-06 53.5 35 82.9
Cpa.g.sc62.166 Carica papaya HOM05D003534 ORTHO05D015840 8.5e-06 53.5 42 71.4
Cpa.g.sc62.167 Carica papaya HOM05D003534 ORTHO05D015840 8.5e-06 53.5 42 71.4
Prupe.8G094400 Prunus persica HOM05D003534 ORTHO05D004911 8.5e-06 53.5 41 75.6
PGSC0003DMG400009279 Solanum tuberosum HOM05D003534 ORTHO05D004911 8.5e-06 53.5 35 82.9
PGSC0003DMG400031553 Solanum tuberosum HOM05D003534 ORTHO05D004911 8.5e-06 53.5 46 69.6
THA.LOC104807735 Tarenaya hassleriana HOM05D003534 ORTHO05D004911 8.5e-06 53.5 42 71.4


User provided reference genes

Program Settings