Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 0.0e+00 1935.2 1023 100.0
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 1.7e-295 1019.6 1038 61.1
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 4.1e-254 882.1 797 66.6
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 2.1e-234 816.6 803 60.9
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 6.4e-215 751.9 782 58.7
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 3.6e-165 586.6 1061 42.6
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 1.3e-127 461.8 855 43.0
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 1.9e-121 441.4 781 41.9
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 6.0e-120 436.4 780 42.9
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 1.6e-117 428.3 787 41.7
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 1.9e-110 404.8 748 43.2
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 3.2e-105 387.5 798 39.3
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 1.6e-104 385.2 785 38.5
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 1.6e-104 385.2 776 39.2
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 1.3e-103 382.1 576 46.2
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 6.2e-101 373.2 1179 32.3
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 5.8e-99 366.7 804 39.4
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 2.9e-98 364.4 784 40.6
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 4.9e-98 363.6 798 40.2
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 8.4e-98 362.8 776 38.4
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 4.2e-97 360.5 775 37.4
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.8e-95 355.1 820 36.3
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 3.0e-95 354.4 781 37.8
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 5.6e-94 350.1 783 36.5
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 7.4e-94 349.7 815 38.0
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 6.2e-93 346.7 774 38.4
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 1.1e-92 345.9 793 37.8
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 2.4e-92 344.7 782 38.1
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 4.0e-92 344.0 799 37.3
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 9.0e-92 342.8 797 36.6
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 1.2e-91 342.4 775 37.8
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 2.6e-91 341.3 558 46.6
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 5.8e-91 340.1 801 36.2
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.1e-88 331.6 787 37.2
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 1.0e-87 329.3 640 39.4
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 5.1e-87 327.0 1109 31.3
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 2.8e-85 321.2 661 38.9
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 3.4e-83 314.3 627 39.9
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 1.1e-81 309.3 772 35.4
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 1.9e-78 298.5 536 42.4
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 4.1e-76 290.8 793 35.4
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 5.3e-76 290.4 346 54.9
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 2.0e-75 288.5 503 42.7
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 1.0e-74 286.2 1058 31.3
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 1.0e-71 276.2 412 46.4
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 1.0e-71 276.2 793 34.0
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 6.7e-71 273.5 1078 30.8
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 1.5e-70 272.3 737 35.8
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 2.2e-69 268.5 596 39.1
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 2.8e-69 268.1 736 36.4
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 4.8e-69 267.3 1049 32.5
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 1.4e-68 265.8 567 39.0
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 2.4e-68 265.0 659 37.5
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 1.2e-67 262.7 623 36.4
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 2.0e-67 261.9 552 38.8
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 5.9e-67 260.4 641 37.0
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 8.5e-66 256.5 771 34.1
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 1.9e-65 255.4 812 32.1
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 4.7e-64 250.8 881 30.5
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 5.1e-63 247.3 560 36.8
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 6.7e-63 246.9 549 38.1
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 1.5e-62 245.7 512 38.7
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 2.6e-62 245.0 606 35.0
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 4.8e-61 240.7 818 32.2
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 4.1e-60 237.7 813 31.6
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 7.0e-60 236.9 517 39.3
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 7.0e-60 236.9 778 32.6
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 2.2e-58 231.9 615 35.8
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 1.1e-57 229.6 780 31.3
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 9.4e-57 226.5 284 50.7
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 1.2e-56 226.1 395 42.3
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 1.6e-56 225.7 557 37.5
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 2.1e-56 225.3 389 43.7
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 1.4e-55 222.6 459 40.7
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 2.0e-54 218.8 245 50.6
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 2.8e-53 214.9 345 43.8
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 4.1e-52 211.1 522 36.0
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 5.3e-52 210.7 787 28.7
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 9.1e-52 209.9 416 42.3
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 2.6e-51 208.4 757 30.1
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 3.5e-51 208.0 255 50.2
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 7.7e-51 206.8 833 29.8
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 5.0e-50 204.1 399 42.4
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 8.5e-50 203.4 616 31.7
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 2.7e-48 198.4 317 45.4
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 1.4e-47 196.1 753 31.9
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 1.8e-47 195.7 776 30.2
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 2.3e-47 195.3 515 33.6
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 2.6e-46 191.8 401 38.2
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 4.4e-46 191.0 609 31.9
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 7.5e-46 190.3 452 36.7
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 7.5e-46 190.3 781 28.7
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 2.4e-44 185.3 369 40.7
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 6.1e-40 170.6 388 38.4
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 3.0e-39 168.3 268 41.8
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 4.0e-39 167.9 196 47.4
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 4.0e-39 167.9 196 47.4
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 4.0e-39 167.9 267 41.9
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 8.8e-39 166.8 190 48.9
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 4.4e-38 164.5 429 34.7
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 5.7e-38 164.1 281 41.3
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 5.7e-38 164.1 519 33.1
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 9.8e-38 163.3 149 61.1
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 3.7e-37 161.4 220 47.7
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 1.8e-36 159.1 230 42.6
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 2.4e-36 158.7 304 38.2
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 3.1e-36 158.3 268 41.0
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 3.5e-35 154.8 153 61.4
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 4.5e-35 154.5 491 33.0
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 7.7e-35 153.7 270 42.6
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 7.7e-35 153.7 263 41.1
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 3.8e-34 151.4 179 48.0
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 3.8e-34 151.4 825 28.6
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 6.6e-34 150.6 299 38.8
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.9e-33 149.1 268 38.8
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 3.3e-33 148.3 254 40.9
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 1.2e-32 146.4 306 40.2
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 1.6e-32 146.0 309 38.2
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 2.1e-32 145.6 272 41.5
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 3.6e-32 144.8 269 40.5
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 8.0e-32 143.7 252 39.3
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 1.7e-29 136.0 185 40.5
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 1.4e-28 132.9 274 37.2
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 2.7e-27 128.6 263 34.6
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 4.5e-27 127.9 181 47.0
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.7e-26 125.9 233 37.8
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 3.9e-26 124.8 136 48.5
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 1.5e-25 122.9 244 35.2
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 1.5e-25 122.9 287 35.9
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 1.5e-25 122.9 241 35.3
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 7.3e-25 120.6 217 38.7
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 9.5e-25 120.2 249 36.5
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 8.0e-24 117.1 537 27.7
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 3.1e-23 115.2 162 45.1
Atru.chr5.3066 Acer truncatum HOM05D003739 ORTHO05D003996 2.0e-22 112.5 146 45.9
Sc19g0000570 Simmondsia chinensis HOM05D003739 ORTHO05D003996 9.8e-22 110.2 584 28.1
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 1.4e-20 106.3 203 40.4
TPR.G20410 Trifolium pratense HOM05D003739 ORTHO05D003996 7.0e-20 104.0 209 38.8
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 1.7e-18 99.4 187 36.9
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 3.9e-18 98.2 515 26.4
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 6.6e-18 97.4 255 33.3
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 2.5e-17 95.5 239 31.4
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 8.0e-16 90.5 150 40.7
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.8e-15 89.4 62 64.5
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 4.4e-14 84.7 190 35.3
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 5.8e-14 84.3 135 37.8
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 5.8e-14 84.3 164 35.4
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 7.5e-14 84.0 83 56.6
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.7e-13 82.8 280 31.1
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 2.2e-13 82.4 113 41.6
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 1.9e-12 79.3 147 36.7
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 1.2e-11 76.6 334 26.6
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 2.7e-11 75.5 104 37.5
QL08p050352 Quercus lobata HOM05D003739 ORTHO05D003996 1.7e-10 72.8 40 90.0
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 3.9e-10 71.6 55 63.6
FAN24G0282 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.5e-09 69.7 126 42.9
FAN20G1594 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.9e-09 69.3 130 40.8
Glyma.16G093750 Glycine max HOM05D003739 ORTHO05D003996 1.9e-09 69.3 90 47.8
Thecc.07G171200 Theobroma cacao HOM05D003739 ORTHO05D003996 4.3e-09 68.2 153 40.5
HPP92_008918 Vanilla planifolia HOM05D003739 ORTHO05D003996 2.1e-08 65.9 117 35.9
SMO293G0020 Selaginella moellendorffii HOM05D027797 ORTHO05D003996 1.1e-07 63.5 225 28.9
Hma1.2p1_0088F.1_g045220 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 3.1e-07 62.0 67 52.2
Actinidia05492 Actinidia chinensis HOM05D003739 ORTHO05D003996 7.5e-06 57.4 85 50.6


User provided reference genes

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