Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 2.4e-106 389.0 223 100.0
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 4.7e-94 348.2 221 90.0
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 1.8e-93 346.3 221 89.6
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 1.8e-93 346.3 223 90.6
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 4.0e-93 345.1 221 90.5
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 6.7e-93 344.4 221 91.4
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 6.7e-93 344.4 221 90.5
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 3.3e-92 342.0 225 89.8
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 4.4e-92 341.7 221 90.0
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 7.5e-92 340.9 221 90.0
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 9.7e-92 340.5 221 90.0
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 1.3e-91 340.1 221 90.0
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 1.7e-91 339.7 221 90.0
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 2.8e-91 339.0 221 89.1
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 3.7e-91 338.6 223 89.2
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 3.7e-91 338.6 221 90.5
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 3.7e-91 338.6 221 90.0
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 6.3e-91 337.8 224 87.9
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 6.3e-91 337.8 223 88.8
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 6.3e-91 337.8 221 88.2
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 6.3e-91 337.8 221 89.1
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 1.4e-90 336.7 221 89.1
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 1.4e-90 336.7 221 89.6
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.4e-90 335.9 221 88.7
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 3.1e-90 335.5 222 89.2
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 3.1e-90 335.5 222 89.2
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 3.1e-90 335.5 222 89.2
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 3.1e-90 335.5 221 88.2
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 4.1e-90 335.1 221 89.6
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 5.3e-90 334.7 221 88.7
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 5.3e-90 334.7 221 87.8
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 5.3e-90 334.7 221 88.7
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 7.0e-90 334.3 221 89.1
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 9.1e-90 334.0 221 88.7
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 1.2e-89 333.6 221 88.7
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 2.0e-89 332.8 221 88.2
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 2.0e-89 332.8 223 87.9
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 5.9e-89 331.3 221 89.1
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 1.0e-88 330.5 227 85.5
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 1.3e-88 330.1 227 86.8
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 1.7e-88 329.7 221 88.7
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 2.2e-88 329.3 234 85.0
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 2.9e-88 328.9 221 86.4
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 3.8e-88 328.6 227 85.5
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 3.8e-88 328.6 227 86.3
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 3.8e-88 328.6 227 86.3
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 5.0e-88 328.2 227 87.2
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 6.5e-88 327.8 227 85.9
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 6.5e-88 327.8 221 86.9
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 1.1e-87 327.0 225 85.8
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 1.1e-87 327.0 223 86.1
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 1.5e-87 326.6 221 86.4
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 1.5e-87 326.6 221 86.4
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 1.5e-87 326.6 229 84.7
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 1.5e-87 326.6 223 87.0
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 1.5e-87 326.6 227 85.5
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 1.5e-87 326.6 221 86.0
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 2.5e-87 325.9 221 86.4
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 2.5e-87 325.9 221 87.3
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 2.5e-87 325.9 221 86.4
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 3.2e-87 325.5 221 86.9
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 5.5e-87 324.7 221 85.1
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 7.2e-87 324.3 221 86.0
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 7.2e-87 324.3 221 86.0
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 9.4e-87 323.9 221 86.0
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 9.4e-87 323.9 223 86.5
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 9.4e-87 323.9 230 84.3
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 1.2e-86 323.6 221 86.4
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 1.2e-86 323.6 221 86.4
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 1.2e-86 323.6 221 86.4
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 1.2e-86 323.6 221 86.4
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 1.2e-86 323.6 221 86.4
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 1.2e-86 323.6 223 86.5
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 1.6e-86 323.2 221 86.0
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 1.6e-86 323.2 221 86.4
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 2.1e-86 322.8 223 87.0
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 2.1e-86 322.8 221 86.0
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 2.1e-86 322.8 221 86.0
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 2.7e-86 322.4 221 86.0
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 2.7e-86 322.4 221 86.0
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 2.7e-86 322.4 221 87.3
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 2.7e-86 322.4 223 87.0
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 3.6e-86 322.0 223 87.0
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 3.6e-86 322.0 221 86.4
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 3.6e-86 322.0 226 85.8
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 3.6e-86 322.0 228 86.0
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 4.7e-86 321.6 227 85.5
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 8.0e-86 320.9 221 85.5
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 8.0e-86 320.9 221 85.5
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.0e-85 320.5 228 85.5
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 1.4e-85 320.1 227 85.0
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 1.8e-85 319.7 222 85.1
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 1.8e-85 319.7 228 85.5
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 1.8e-85 319.7 228 85.5
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 1.8e-85 319.7 228 84.6
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 1.8e-85 319.7 228 85.5
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 1.8e-85 319.7 228 84.6
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 3.0e-85 318.9 227 85.5
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 4.0e-85 318.5 226 84.5
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 6.8e-85 317.8 226 83.2
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 6.8e-85 317.8 227 84.6
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 6.8e-85 317.8 221 85.1
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 8.8e-85 317.4 226 85.4
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 1.2e-84 317.0 231 84.0
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 1.2e-84 317.0 228 84.2
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 2.0e-84 316.2 221 86.4
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 3.4e-84 315.5 230 83.5
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 4.4e-84 315.1 223 85.7
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 4.4e-84 315.1 219 84.9
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 9.8e-84 313.9 221 85.5
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 1.3e-83 313.5 222 85.1
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 1.3e-83 313.5 222 85.1
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 1.1e-82 310.5 221 84.2
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 4.1e-82 308.5 203 88.2
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 1.2e-81 307.0 226 81.0
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 2.0e-81 306.2 267 72.7
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 2.2e-80 302.8 204 87.3
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 2.9e-80 302.4 221 82.8
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 3.8e-80 302.0 225 81.8
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 8.5e-80 300.8 185 93.5
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 8.5e-80 300.8 202 88.1
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 8.5e-80 300.8 185 93.5
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 1.5e-79 300.1 224 82.6
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 4.2e-79 298.5 210 85.7
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 5.5e-79 298.1 197 88.8
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.0e-77 293.9 183 92.9
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 1.8e-77 293.1 225 80.0
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 1.8e-77 293.1 224 80.8
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 1.5e-76 290.0 178 94.4
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 2.8e-75 285.8 279 60.6
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 1.1e-74 283.9 200 85.5
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 3.5e-73 278.9 190 87.4
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 1.3e-72 276.9 178 89.3
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 2.3e-72 276.2 167 95.8
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 6.8e-69 264.6 186 84.9
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 8.9e-69 264.2 221 72.9
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 1.5e-68 263.5 185 84.9
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 2.6e-68 262.7 196 82.7
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 4.4e-68 261.9 192 85.4
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.1e-66 257.3 219 66.7
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 9.2e-66 254.2 168 88.7
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 1.2e-65 253.8 163 90.8
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 1.0e-64 250.8 165 87.9
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 6.2e-62 241.5 147 96.6
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 1.4e-61 240.4 164 87.2
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 6.8e-61 238.0 180 78.3
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 3.4e-60 235.7 147 91.2
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 8.6e-56 221.1 177 68.9
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 1.1e-55 220.7 137 97.1
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 3.3e-55 219.2 224 64.7
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 4.3e-55 218.8 177 76.8
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.1e-54 216.5 236 57.2
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 1.8e-53 213.4 155 72.9
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 2.3e-53 213.0 165 75.8
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 1.3e-51 207.2 164 79.9
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 3.7e-51 205.7 114 86.0
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 9.2e-50 201.1 167 74.9
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 2.1e-49 199.9 131 93.1
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 1.0e-48 197.6 136 74.3
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 6.8e-45 184.9 160 63.1
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 6.4e-35 151.8 138 61.6
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 6.0e-33 145.2 127 62.2
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 5.8e-28 128.6 221 43.0
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 7.1e-26 121.7 202 41.6
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 1.6e-17 94.0 108 48.1
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 2.7e-17 93.2 46 95.7
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 1.3e-16 90.9 78 62.8
Ca_28908_v3 Cicer arietinum L. HOM05D004278 ORTHO05D004593 2.3e-08 63.5 109 45.0
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 3.3e-07 59.7 60 51.7


User provided reference genes

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