Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 3.4e-141 505.0 255 100.0
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 2.9e-140 501.9 255 99.2
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 1.7e-100 369.8 226 81.4
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 1.0e-97 360.5 255 69.8
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 3.9e-97 358.6 249 72.7
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 8.8e-97 357.5 255 69.0
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 1.5e-96 356.7 254 68.5
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 1.3e-95 353.6 255 71.0
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 1.6e-93 346.7 255 69.8
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 3.5e-93 345.5 255 67.5
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 4.5e-93 345.1 257 66.9
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 3.8e-92 342.0 254 66.1
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 5.0e-92 341.7 255 65.9
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 6.5e-92 341.3 191 88.0
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 8.5e-92 340.9 257 66.1
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.1e-91 340.5 255 66.3
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 1.9e-91 339.7 254 67.7
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 3.2e-91 339.0 255 68.2
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 1.2e-90 337.0 255 67.1
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.0e-89 334.0 254 65.4
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 1.4e-89 333.6 255 65.5
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 2.6e-88 329.3 271 63.5
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 4.5e-85 318.5 255 61.6
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 2.2e-84 316.2 239 64.4
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 6.5e-84 314.7 254 63.4
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 8.5e-84 314.3 242 66.9
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 5.5e-83 311.6 243 67.1
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 7.2e-83 311.2 253 62.1
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 4.7e-82 308.5 226 67.3
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 4.7e-82 308.5 255 59.6
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 2.3e-81 306.2 243 66.3
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 9.8e-80 300.8 254 58.7
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 9.8e-80 300.8 254 63.0
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 1.1e-78 297.4 254 58.3
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 1.8e-78 296.6 254 57.1
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 2.0e-77 293.1 256 62.1
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 2.7e-77 292.7 254 57.5
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 4.5e-77 292.0 255 57.6
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 4.5e-77 292.0 254 57.5
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 4.5e-77 292.0 254 57.5
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 5.9e-77 291.6 258 59.7
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 5.9e-77 291.6 242 59.9
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 5.9e-77 291.6 255 59.2
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 7.7e-77 291.2 254 58.7
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 2.9e-76 289.3 233 60.9
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 3.8e-76 288.9 242 59.5
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 8.6e-76 287.7 256 58.2
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 1.1e-75 287.3 256 58.2
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 1.9e-75 286.6 232 64.2
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 2.5e-75 286.2 254 56.3
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 3.3e-75 285.8 254 55.5
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 2.8e-74 282.7 255 56.5
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 6.1e-74 281.6 240 59.2
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 8.0e-74 281.2 234 59.8
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 1.4e-73 280.4 255 58.4
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 1.4e-73 280.4 255 58.4
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 1.8e-73 280.0 255 57.6
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 3.0e-73 279.3 230 60.0
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 1.2e-72 277.3 254 55.1
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 2.6e-72 276.2 252 56.7
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 3.4e-72 275.8 241 59.8
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 5.7e-72 275.0 242 58.7
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 9.8e-72 274.2 254 53.9
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 1.3e-71 273.9 254 56.3
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 2.2e-71 273.1 237 59.5
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 2.2e-71 273.1 254 55.5
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 2.8e-71 272.7 238 56.3
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 1.1e-70 270.8 254 53.9
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 1.4e-70 270.4 239 56.9
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 4.1e-70 268.9 240 56.2
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 9.2e-70 267.7 254 53.9
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 9.2e-70 267.7 254 54.7
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 1.6e-69 266.9 255 54.9
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 3.5e-69 265.8 226 59.3
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 7.8e-69 264.6 250 54.0
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 1.0e-68 264.2 259 54.1
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 1.0e-68 264.2 256 55.1
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 1.7e-68 263.5 243 55.1
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 5.0e-68 261.9 255 54.1
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 8.6e-68 261.2 240 55.4
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 8.6e-68 261.2 255 54.1
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 8.6e-68 261.2 236 59.7
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 1.1e-67 260.8 255 52.2
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 1.5e-67 260.4 247 53.8
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 1.9e-67 260.0 256 51.2
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 1.9e-67 260.0 211 62.6
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 1.9e-67 260.0 211 62.6
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 2.5e-67 259.6 256 52.7
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 4.3e-67 258.8 255 51.8
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 5.6e-67 258.5 233 55.8
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 5.6e-67 258.5 233 55.8
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 5.6e-67 258.5 254 53.9
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 5.6e-67 258.5 254 54.3
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 5.6e-67 258.5 216 61.6
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 7.3e-67 258.1 254 53.1
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 7.3e-67 258.1 255 51.8
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 9.5e-67 257.7 256 52.3
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 1.6e-66 256.9 254 53.5
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 1.6e-66 256.9 256 52.3
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 1.6e-66 256.9 249 52.6
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.1e-66 256.5 239 54.0
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 3.6e-66 255.8 233 55.8
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 3.6e-66 255.8 239 58.6
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 8.0e-66 254.6 227 54.2
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 1.8e-65 253.4 254 51.6
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 3.1e-65 252.7 254 51.6
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 1.2e-64 250.8 265 47.9
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 2.0e-64 250.0 255 52.5
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 2.0e-64 250.0 255 52.5
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 2.6e-64 249.6 236 55.1
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 4.4e-64 248.8 213 60.1
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 2.9e-63 246.1 165 73.3
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 4.9e-63 245.4 254 54.3
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 8.3e-63 244.6 255 51.4
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 1.1e-62 244.2 181 66.3
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 2.4e-62 243.0 232 53.4
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 5.4e-62 241.9 238 51.3
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 1.2e-61 240.7 263 50.2
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 5.0e-60 235.3 235 50.6
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 5.0e-60 235.3 255 50.6
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 8.6e-60 234.6 227 55.1
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 1.9e-59 233.4 235 48.9
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 3.3e-59 232.6 190 63.2
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 3.3e-59 232.6 190 63.2
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 1.1e-57 227.6 238 47.5
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 1.7e-55 220.3 208 52.9
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 4.1e-54 215.7 233 48.9
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 1.2e-53 214.2 242 48.3
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 2.3e-52 209.9 217 50.2
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 3.0e-52 209.5 211 55.0
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 5.1e-52 208.8 238 47.1
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 2.2e-47 193.4 204 48.5
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 1.2e-45 187.6 144 69.4
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 5.1e-44 182.2 261 40.6
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 1.9e-43 180.3 239 43.1
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 1.2e-37 161.0 243 37.0
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 6.0e-37 158.7 170 51.2
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 6.2e-34 148.7 166 47.6
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.3e-31 141.0 119 63.0
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 2.7e-29 133.3 137 51.8
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 4.6e-29 132.5 158 47.5
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 3.0e-28 129.8 86 70.9
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 6.6e-28 128.6 101 61.4
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 1.6e-26 124.0 100 61.0
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.8e-25 120.6 95 65.3
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 5.4e-22 109.0 240 32.5
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 5.4e-22 109.0 248 31.0
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 2.3e-20 103.6 76 64.5
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 2.1e-18 97.1 126 43.7
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 9.3e-14 81.6 304 27.6
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 3.0e-12 76.6 54 70.4


User provided reference genes

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