Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 2.6e-141 505.4 255 100.0
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 1.7e-140 502.7 255 99.2
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 3.8e-100 368.6 226 81.0
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 3.9e-97 358.6 255 69.4
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 1.1e-96 357.1 254 68.5
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 2.0e-96 356.3 249 72.3
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 4.4e-96 355.1 255 68.2
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 1.7e-95 353.2 255 70.6
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 2.0e-93 346.3 255 67.5
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 7.7e-93 344.4 255 69.0
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 2.2e-92 342.8 257 66.1
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 6.5e-92 341.3 255 66.3
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 1.9e-91 339.7 257 65.8
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 1.9e-91 339.7 254 65.4
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 2.5e-91 339.3 255 65.1
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 5.5e-91 338.2 191 86.9
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 9.4e-91 337.4 254 66.9
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.6e-90 336.7 255 67.5
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 6.1e-90 334.7 255 66.3
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 5.2e-89 331.6 254 64.6
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 6.8e-89 331.3 255 64.7
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 1.5e-88 330.1 271 63.5
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 2.7e-85 319.3 255 61.6
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 6.5e-84 314.7 239 64.0
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 3.2e-83 312.4 254 63.0
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 4.2e-83 312.0 242 66.1
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 2.1e-82 309.7 253 61.7
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 2.7e-82 309.3 243 66.3
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 8.0e-82 307.8 226 67.3
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 8.0e-82 307.8 255 59.2
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.2e-80 303.9 243 65.4
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 5.7e-80 301.6 254 58.7
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 7.5e-80 301.2 254 63.0
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 6.3e-79 298.1 254 58.3
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 1.1e-78 297.4 254 57.1
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 1.6e-77 293.5 256 62.1
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 1.6e-77 293.5 254 57.1
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 2.7e-77 292.7 255 57.6
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 2.7e-77 292.7 254 57.1
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 3.5e-77 292.4 242 59.9
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 3.5e-77 292.4 255 59.2
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 1.7e-76 290.0 254 58.3
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 2.3e-76 289.7 254 56.7
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 2.3e-76 289.7 233 60.9
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 2.3e-76 289.7 242 59.5
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 3.8e-76 288.9 258 58.9
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 5.0e-76 288.5 256 58.2
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 6.6e-76 288.1 256 57.8
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 1.9e-75 286.6 254 55.5
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 2.5e-75 286.2 254 55.9
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 4.2e-75 285.4 232 63.8
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 1.6e-74 283.5 255 56.1
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 6.1e-74 281.6 234 59.4
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 6.1e-74 281.6 240 58.8
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 8.0e-74 281.2 255 58.0
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 8.0e-74 281.2 255 58.0
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 1.0e-73 280.8 255 57.6
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 4.0e-73 278.9 230 59.6
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 8.9e-73 277.7 254 54.7
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 1.5e-72 276.9 242 59.1
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 1.5e-72 276.9 252 56.7
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 2.6e-72 276.2 241 59.8
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 7.5e-72 274.6 254 55.9
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 7.5e-72 274.6 254 53.5
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 1.7e-71 273.5 237 59.5
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 2.2e-71 273.1 254 55.5
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 2.2e-71 273.1 238 55.9
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 3.7e-71 272.3 239 56.9
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 1.1e-70 270.8 254 53.5
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 1.4e-70 270.4 240 56.7
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 2.4e-70 269.6 254 54.3
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 5.4e-70 268.5 254 54.3
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 9.2e-70 267.7 255 54.9
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 2.7e-69 266.2 226 58.8
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 4.5e-69 265.4 250 53.6
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 7.8e-69 264.6 259 53.7
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 7.8e-69 264.6 256 54.7
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 1.3e-68 263.8 240 55.8
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 1.3e-68 263.8 243 54.7
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 2.9e-68 262.7 255 53.7
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 5.0e-68 261.9 211 63.0
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 5.0e-68 261.9 211 63.0
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 6.6e-68 261.5 255 53.7
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 6.6e-68 261.5 255 51.8
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 1.1e-67 260.8 247 53.8
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 1.1e-67 260.8 256 50.8
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 1.5e-67 260.4 256 52.3
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 1.9e-67 260.0 236 59.3
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 2.5e-67 259.6 255 51.4
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 3.3e-67 259.2 254 54.3
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 4.3e-67 258.8 254 53.5
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 4.3e-67 258.8 255 51.4
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 4.3e-67 258.8 249 53.0
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 5.6e-67 258.5 254 52.8
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 5.6e-67 258.5 256 52.0
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 5.6e-67 258.5 239 54.4
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 9.5e-67 257.7 254 53.1
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 9.5e-67 257.7 256 52.0
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.2e-66 257.3 233 55.4
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.2e-66 257.3 233 55.4
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 1.2e-66 257.3 233 56.2
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 2.1e-66 256.5 227 54.6
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 2.8e-66 256.1 216 60.6
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 4.7e-66 255.4 254 52.0
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 8.0e-66 254.6 239 58.2
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 2.3e-65 253.1 254 51.2
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 4.0e-65 252.3 265 48.3
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 1.2e-64 250.8 255 52.2
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 1.2e-64 250.8 255 52.2
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 1.2e-64 250.8 213 60.6
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 1.5e-64 250.4 236 54.7
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 3.7e-63 245.7 254 54.3
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 8.3e-63 244.6 181 66.3
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 1.4e-62 243.8 232 53.4
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 2.4e-62 243.0 165 72.1
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 4.1e-62 242.3 255 50.6
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 7.0e-62 241.5 238 50.8
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 6.0e-61 238.4 263 49.4
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 2.3e-60 236.5 227 55.5
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 3.0e-60 236.1 235 50.6
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 3.9e-60 235.7 255 50.6
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 8.6e-60 234.6 190 63.7
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 8.6e-60 234.6 190 63.7
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 1.5e-59 233.8 235 48.5
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 8.1e-58 228.0 238 47.1
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 4.4e-56 222.2 208 52.9
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 5.4e-54 215.3 233 48.5
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 5.4e-54 215.3 242 48.3
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 6.0e-53 211.8 217 50.7
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 3.0e-52 209.5 211 55.0
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 5.1e-52 208.8 238 46.6
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 2.9e-47 193.0 204 48.0
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 5.4e-46 188.7 144 69.4
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 3.9e-44 182.6 261 40.2
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 5.1e-44 182.2 239 43.5
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 5.4e-38 162.2 243 37.0
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 2.7e-37 159.8 170 51.2
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 1.6e-34 150.6 166 47.6
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.3e-31 141.0 119 63.0
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 7.1e-30 135.2 137 52.6
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 4.6e-29 132.5 158 47.5
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 5.1e-28 129.0 86 70.9
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 1.5e-27 127.5 101 60.4
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 4.3e-27 125.9 100 62.0
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 4.8e-26 122.5 95 66.3
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 2.4e-22 110.2 240 32.5
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 3.2e-22 109.8 248 31.0
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 2.3e-20 103.6 76 64.5
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 2.1e-18 97.1 126 43.7
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 1.2e-13 81.3 304 27.3
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 3.0e-12 76.6 54 70.4


User provided reference genes

Program Settings