Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p041915 Quercus lobata HOM05D005713 ORTHO05D021118 3.4e-66 255.0 141 100.0
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 5.6e-61 237.7 140 95.0
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 5.8e-58 227.6 140 93.6
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 7.6e-34 147.5 140 62.9
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 5.5e-32 141.4 146 61.6
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 9.7e-21 104.0 141 54.6
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 2.4e-19 99.4 134 50.0
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 7.7e-18 94.4 153 48.4
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 1.7e-17 93.2 137 45.3
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 1.7e-17 93.2 139 45.3
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 2.2e-17 92.8 138 44.9
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 2.2e-17 92.8 139 44.6
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 2.2e-17 92.8 145 49.7
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 3.8e-17 92.0 131 45.8
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 8.5e-17 90.9 137 49.6
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 1.4e-16 90.1 134 49.3
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 1.4e-16 90.1 133 46.6
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 1.9e-16 89.7 138 44.9
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 1.9e-16 89.7 138 47.8
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 2.5e-16 89.4 133 45.1
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 5.5e-16 88.2 133 44.4
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 2.1e-15 86.3 149 47.0
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 4.7e-15 85.1 143 43.4
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 1.8e-14 83.2 137 43.8
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 3.9e-14 82.0 138 46.4
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 3.9e-14 82.0 141 44.0
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 2.6e-13 79.3 143 40.6
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 5.7e-13 78.2 141 44.0
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 5.7e-13 78.2 148 45.9
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 9.7e-13 77.4 137 40.9
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 1.3e-12 77.0 132 42.4
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 1.7e-12 76.6 135 45.9
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 1.7e-12 76.6 116 52.6
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 2.2e-12 76.3 142 43.0
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 2.2e-12 76.3 142 43.0
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 4.8e-12 75.1 104 50.0
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 6.3e-12 74.7 131 39.7
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 8.2e-12 74.3 141 47.5
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 8.2e-12 74.3 132 43.2
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 2.4e-11 72.8 141 43.3
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 3.1e-11 72.4 138 40.6
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 3.1e-11 72.4 137 40.9
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 4.1e-11 72.0 136 45.6
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 4.1e-11 72.0 142 45.1
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 7.0e-11 71.2 135 45.2
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 1.2e-10 70.5 143 40.6
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 4.5e-10 68.6 139 41.0
Hma1.2p1_0066F.1_g036790 Hydrangea macrophylla HOM05D005713 ORTHO05D021118 5.9e-10 68.2 103 44.7
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 5.9e-10 68.2 97 51.5
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 7.7e-10 67.8 136 44.1
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 1.0e-09 67.4 125 44.0
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 1.3e-09 67.0 142 39.4
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 1.7e-09 66.6 143 39.2
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 2.2e-09 66.2 137 40.9
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 2.2e-09 66.2 130 40.8
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 2.9e-09 65.9 141 40.4
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 3.8e-09 65.5 102 44.1
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 6.5e-09 64.7 139 38.1
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 8.5e-09 64.3 140 39.3
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 1.9e-08 63.2 142 40.8
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 3.2e-08 62.4 119 42.9
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 3.2e-08 62.4 115 40.9
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 5.5e-08 61.6 138 36.2
Actinidia27912 Actinidia chinensis HOM05D005713 ORTHO05D021118 9.4e-08 60.8 142 35.2
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 9.4e-08 60.8 143 39.9
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.6e-07 60.1 133 42.1
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 1.6e-07 60.1 141 44.0
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 3.6e-07 58.9 149 39.6
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 3.6e-07 58.9 131 39.7
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 4.7e-07 58.5 130 40.8
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 8.0e-07 57.8 128 41.4
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 8.0e-07 57.8 128 41.4
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 8.0e-07 57.8 95 44.2
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 8.0e-07 57.8 107 45.8
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 8.0e-07 57.8 146 40.4
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 1.0e-06 57.4 122 41.0
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 2.3e-06 56.2 124 42.7
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 5.2e-06 55.1 120 41.7
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 6.7e-06 54.7 127 43.3


User provided reference genes

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