Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p041746 Quercus lobata HOM05D001557 ORTHO05D001299 2.1e-82 308.9 146 100.0
QL11p042311 Quercus lobata HOM05D001557 ORTHO05D001299 2.7e-58 228.8 116 94.0
CiPaw.05G060800 Carya illinoinensis HOM05D001557 ORTHO05D001299 3.9e-41 171.8 117 67.5
Cfa004974 Carpinus fangiana HOM05D001557 ORTHO05D001299 3.3e-40 168.7 116 67.2
TWI79G1773 Tripterygium wilfordii HOM05D001557 ORTHO05D001299 1.4e-38 163.3 116 62.9
ClCG02G005300 Citrullus lanatus HOM05D001557 ORTHO05D001299 1.0e-36 157.1 116 62.9
CsaV3_7G010220 Cucumis sativus L. HOM05D001557 ORTHO05D001299 6.5e-36 154.5 116 61.2
RcHm_v2.0_Chr6g0262541 Rosa chinensis HOM05D001557 ORTHO05D001299 9.4e-35 150.6 113 61.9
MELO3C018405.2 Cucumis melo HOM05D001557 ORTHO05D001299 2.1e-34 149.4 116 58.6
FvH4_2g08020 Fragaria vesca HOM05D001557 ORTHO05D001299 3.6e-34 148.7 116 57.8
Prupe.8G104800 Prunus persica HOM05D001557 ORTHO05D001299 7.9e-34 147.5 116 58.6
COL.COLO4_32465 Corchorus olitorius HOM05D001557 ORTHO05D001299 1.0e-33 147.1 116 57.8
Lj5P198T46 Lonicera japonica HOM05D001557 ORTHO05D001299 1.4e-33 146.7 123 53.7
Nn1g05028 Nelumbo nucifera HOM05D001557 ORTHO05D001299 2.3e-33 146.0 115 56.5
FAN20G2050 Fragaria x ananassa HOM05D001557 ORTHO05D001299 3.9e-33 145.2 116 56.0
Gohir.A04G117700 Gossypium hirsutum HOM05D001557 ORTHO05D001299 3.9e-33 145.2 117 55.6
Gohir.D04G159400 Gossypium hirsutum HOM05D001557 ORTHO05D001299 3.9e-33 145.2 117 55.6
Gorai.012G146800 Gossypium raimondii HOM05D001557 ORTHO05D001299 3.9e-33 145.2 117 55.6
GSVIVG01031956001 Vitis vinifera HOM05D001557 ORTHO05D001299 3.9e-33 145.2 117 57.3
Eucgr.G00475 Eucalyptus grandis HOM05D001557 ORTHO05D001299 8.8e-33 144.1 116 56.0
MD10G1082300 Malus domestica HOM05D001557 ORTHO05D001299 1.1e-32 143.7 116 58.6
PSO541G5913 Papaver somniferum HOM05D001557 ORTHO05D001299 4.3e-32 141.7 117 53.8
Thecc.02G121700 Theobroma cacao HOM05D001557 ORTHO05D001299 4.3e-32 141.7 115 58.3
Cpa.g.sc62.107 Carica papaya HOM05D001557 ORTHO05D001299 7.4e-32 141.0 116 56.9
AT3G18870 Arabidopsis thaliana HOM05D001557 ORTHO05D001299 1.3e-31 140.2 116 55.2
Cc02_g17640 Coffea canephora HOM05D001557 ORTHO05D001299 1.7e-31 139.8 116 55.2
Duzib132G1079 Durio zibethinus HOM05D001557 ORTHO05D001299 1.7e-31 139.8 116 55.2
FAN15G1950 Fragaria x ananassa HOM05D001557 ORTHO05D001299 1.7e-31 139.8 116 53.4
Atru.chr5.2934 Acer truncatum HOM05D001557 ORTHO05D001299 2.2e-31 139.4 116 55.2
VMungo1383G2205 Vigna mungo HOM05D001557 ORTHO05D001299 2.2e-31 139.4 116 55.2
Ah.01g006230 Amaranthus hybridus HOM05D003825 ORTHO05D004491 2.8e-31 139.0 114 56.1
Carub.0003s1871 Capsella rubella HOM05D001557 ORTHO05D001299 2.8e-31 139.0 116 54.3
BraA05t21910Z Brassica rapa HOM05D001557 ORTHO05D001299 6.3e-31 137.9 116 55.2
ECA236G0402 Erigeron canadensis HOM05D001557 ORTHO05D001299 6.3e-31 137.9 116 55.2
Thhalv10022350m.g Eutrema salsugineum HOM05D001557 ORTHO05D001299 6.3e-31 137.9 116 54.3
PSO675G4761 Papaver somniferum HOM05D001557 ORTHO05D001299 6.3e-31 137.9 117 52.1
CARHR094320 Cardamine hirsuta HOM05D001557 ORTHO05D001299 8.2e-31 137.5 116 53.4
AUR62016730 Chenopodium quinoa HOM05D001557 ORTHO05D001299 8.2e-31 137.5 117 52.1
A05p30680 Brassica napus HOM05D001557 ORTHO05D001299 1.1e-30 137.1 116 54.3
DCAR_003643 Daucus carota HOM05D001557 ORTHO05D001299 1.1e-30 137.1 116 54.3
Lsat_1_v5_gn_7_89121 Lactuca sativa HOM05D001557 ORTHO05D001299 1.1e-30 137.1 116 54.3
Potri.004G150600 Populus trichocarpa HOM05D001557 ORTHO05D001299 1.1e-30 137.1 117 53.8
BolC5t33385H Brassica oleracea HOM05D001557 ORTHO05D001299 1.4e-30 136.7 116 54.3
C05p46560 Brassica napus HOM05D001557 ORTHO05D001299 1.8e-30 136.3 116 54.3
Glyma.18G249400 Glycine max HOM05D001557 ORTHO05D001299 2.4e-30 136.0 116 55.2
AL3G32260 Arabidopsis lyrata HOM05D001557 ORTHO05D001299 3.1e-30 135.6 116 53.4
Ciclev10029017m.g Citrus clementina HOM05D001557 ORTHO05D001299 6.9e-30 134.4 116 51.7
Lalb_Chr03g0040671 Lupinus albus HOM05D001557 ORTHO05D001299 9.1e-30 134.0 115 54.8
BcaB06g25941 Brassica carinata HOM05D001557 ORTHO05D001299 1.2e-29 133.7 116 55.2
EL10Ac9g21731 Beta vulgaris HOM05D001557 ORTHO05D001299 2.0e-29 132.9 121 47.1
Aa31LG8G5710 Aethionema arabicum HOM05D001557 ORTHO05D001299 2.6e-29 132.5 116 51.7
Sp3g16970 Schrenkiella parvula HOM05D001557 ORTHO05D001299 7.7e-29 131.0 116 50.9
THA.LOC104800070 Tarenaya hassleriana HOM05D001557 ORTHO05D001299 7.7e-29 131.0 116 48.3
Phvul.008G048200 Phaseolus vulgaris HOM05D001557 ORTHO05D001299 1.0e-28 130.6 121 53.7
Actinidia17820 Actinidia chinensis HOM05D001557 ORTHO05D001299 1.7e-28 129.8 122 49.2
Lj4g0009735 Lotus japonicus HOM05D001557 ORTHO05D001299 1.7e-28 129.8 114 55.3
TPR.G29113 Trifolium pratense HOM05D001557 ORTHO05D001299 1.7e-28 129.8 116 53.4
TAR376G0325 Trochodendron aralioides HOM05D001557 ORTHO05D001299 1.7e-28 129.8 117 53.0
PGR042G2890 Punica granatum HOM05D001557 ORTHO05D001299 5.0e-28 128.3 116 51.7
AUR62011331 Chenopodium quinoa HOM05D001557 ORTHO05D001299 1.4e-27 126.7 117 50.4
Rhsim05G0074800 Rhododendron simsii HOM05D003825 ORTHO05D004491 1.4e-27 126.7 117 49.6
CSS0008494 Camellia sinensis var. sinensis HOM05D001557 ORTHO05D001299 4.2e-27 125.2 118 53.4
Psat3g100160 Pisum sativum HOM05D001557 ORTHO05D001299 2.7e-26 122.5 114 52.6
Aqoxy6G01086 Aquilegia oxysepala HOM05D001557 ORTHO05D001299 3.6e-26 122.1 115 51.3
FAN24G0454 Fragaria x ananassa HOM05D001557 ORTHO05D001299 3.6e-26 122.1 116 51.7
Medtr7g081270 Medicago truncatula HOM05D001557 ORTHO05D001299 3.9e-25 118.6 115 49.6
Sed0024205 Sechium edule HOM05D001557 ORTHO05D001299 6.7e-25 117.9 118 49.2
Nitab4.5_0004172g0050 Nicotiana tabacum HOM05D001557 ORTHO05D001299 8.8e-25 117.5 115 47.8
Nitab4.5_0000308g0020 Nicotiana tabacum HOM05D001557 ORTHO05D001299 1.5e-24 116.7 115 47.0
MBI16_g31216_MAGBIO Magnolia biondii HOM05D001557 ORTHO05D001299 3.3e-24 115.5 115 50.4
CAN.G322.130 Capsicum annuum HOM05D001557 ORTHO05D001299 1.3e-23 113.6 99 53.5
PGSC0003DMG400000721 Solanum tuberosum HOM05D001557 ORTHO05D001299 8.2e-23 110.9 115 46.1
Sopen01g051740 Solanum pennellii HOM05D001557 ORTHO05D001299 1.4e-22 110.2 98 51.0
Solyc01g109550.2 Solanum lycopersicum HOM05D001557 ORTHO05D001299 1.8e-22 109.8 98 51.0
Sabra04G0100100 Salix brachista HOM05D001557 ORTHO05D001299 8.5e-20 100.9 91 50.5
Lj6P233T17 Lonicera japonica HOM05D001557 ORTHO05D001299 1.4e-19 100.1 102 44.1
Manes.15G148100 Manihot esculenta HOM05D001557 ORTHO05D001299 4.1e-14 82.0 116 38.8
Haze_11996 Corylus avellana HOM05D001557 ORTHO05D001299 1.7e-07 60.1 118 33.1
Cfa008965 Carpinus fangiana HOM05D001557 ORTHO05D001299 4.8e-07 58.5 115 33.9
Sabra16G0075100 Salix brachista HOM05D001557 ORTHO05D001299 4.1e-06 55.5 116 27.6
Potri.016G072200 Populus trichocarpa HOM05D001557 ORTHO05D001299 5.3e-06 55.1 116 27.6
HPP92_001099 Vanilla planifolia HOM05D001557 ORTHO05D001299 7.0e-06 54.7 116 31.0


User provided reference genes

Program Settings