Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p040051 Quercus lobata HOM05D001401 ORTHO05D006368 1.5e-81 306.2 168 100.0
QL11p037824 Quercus lobata HOM05D001401 ORTHO05D006368 4.1e-50 201.8 130 90.0
CiPaw.05G060100 Carya illinoinensis HOM05D001401 ORTHO05D006368 4.3e-15 85.5 99 66.7
Phvul.011G048500 Phaseolus vulgaris HOM05D001401 ORTHO05D006368 8.0e-14 81.3 77 62.3
Psat7g205720 Pisum sativum HOM05D001401 ORTHO05D006368 2.3e-13 79.7 77 59.7
Glyma.12G046700 Glycine max HOM05D001401 ORTHO05D006368 2.0e-12 76.6 77 59.7
VMungo1127G1180 Vigna mungo HOM05D001401 ORTHO05D006368 2.0e-12 76.6 77 61.0
Lalb_Chr03g0025871 Lupinus albus HOM05D001401 ORTHO05D006368 1.7e-11 73.6 77 62.3
Haze_02430 Corylus avellana HOM05D001401 ORTHO05D006368 2.9e-11 72.8 67 74.6
FAN20G2914 Fragaria x ananassa HOM05D001401 ORTHO05D006368 4.9e-11 72.0 96 51.0
FAN15G3283 Fragaria x ananassa HOM05D001401 ORTHO05D006368 6.4e-11 71.6 80 56.2
MD05G1071000 Malus domestica HOM05D001401 ORTHO05D006368 1.1e-10 70.9 99 59.6
Sed0023769 Sechium edule HOM05D001401 ORTHO05D006368 1.1e-10 70.9 94 50.0
vmacro02151 Vaccinium macrocarpon HOM05D001401 ORTHO05D006368 1.1e-10 70.9 102 48.0
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 1.4e-10 70.5 127 43.3
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 1.4e-10 70.5 96 49.0
Hma1.2p1_0584F.1_g183440 Hydrangea macrophylla HOM05D001401 ORTHO05D006368 1.8e-10 70.1 101 49.5
Lalb_Chr01g0002831 Lupinus albus HOM05D001401 ORTHO05D006368 1.8e-10 70.1 77 54.5
arahy.Tifrunner.gnm1.ann1.U2ETAV Arachis hypogaea HOM05D001401 ORTHO05D006368 3.2e-10 69.3 86 54.7
CsaV3_2G014470 Cucumis sativus L. HOM05D001401 ORTHO05D006368 3.2e-10 69.3 97 48.5
Lj3g0025450 Lotus japonicus HOM05D001401 ORTHO05D006368 3.2e-10 69.3 78 67.9
GSVIVG01031902001 Vitis vinifera HOM05D001401 ORTHO05D006368 4.1e-10 68.9 93 58.1
Sed0001686 Sechium edule HOM05D001401 ORTHO05D006368 9.2e-10 67.8 93 44.1
Glyma.11G121600 Glycine max HOM05D001401 ORTHO05D006368 1.2e-09 67.4 77 61.0
Oeu027593.1 Olea europaea HOM05D001574 ORTHO05D006368 1.6e-09 67.0 93 47.3
Lsat_1_v5_gn_5_118161 Lactuca sativa HOM05D001401 ORTHO05D006368 2.7e-09 66.2 97 47.4
Ca_20836_v3 Cicer arietinum L. HOM05D001401 ORTHO05D006368 3.5e-09 65.9 78 53.8
MELO3C021952.2 Cucumis melo HOM05D001401 ORTHO05D002222 3.5e-09 65.9 103 44.7
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 5.9e-09 65.1 98 45.9
Ciclev10028944m.g Citrus clementina HOM05D001401 ORTHO05D006368 7.8e-09 64.7 77 55.8
SGA_v2.0_scaffold58G20583 Striga asiatica HOM05D001401 ORTHO05D006368 7.8e-09 64.7 97 47.4
Actinidia00491 Actinidia chinensis HOM05D001401 ORTHO05D006368 1.7e-08 63.5 108 42.6
Aa31LG8G13520 Aethionema arabicum HOM05D001401 ORTHO05D006368 1.7e-08 63.5 86 47.7
ECA234G2696 Erigeron canadensis HOM05D000324 ORTHO05D001014 1.7e-08 63.5 93 52.7
Duzib248G1632 Durio zibethinus HOM05D001401 ORTHO05D006368 2.3e-08 63.2 99 43.4
AT2G16070 Arabidopsis thaliana HOM05D001401 ORTHO05D006368 3.0e-08 62.8 108 41.7
Gohir.D01G172200 Gossypium hirsutum HOM05D001401 ORTHO05D006368 3.0e-08 62.8 97 46.4
Gorai.002G213800 Gossypium raimondii HOM05D001401 ORTHO05D006368 3.0e-08 62.8 97 46.4
Ah.01g019700 Amaranthus hybridus HOM05D001401 ORTHO05D002222 3.9e-08 62.4 90 45.6
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 5.0e-08 62.0 129 36.4
Sabra09G0084600 Salix brachista HOM05D001401 ORTHO05D006368 5.0e-08 62.0 127 38.6
MSTRG.20113 Avicennia marina HOM05D001401 ORTHO05D006368 6.6e-08 61.6 97 45.4
Rhsim11G0172600 Rhododendron simsii HOM05D000554 ORTHO05D002829 8.6e-08 61.2 107 47.7
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 1.1e-07 60.8 77 48.1
Nitab4.5_0004280g0010 Nicotiana tabacum HOM05D001401 ORTHO05D006368 1.1e-07 60.8 77 48.1
C09p12860 Brassica napus HOM05D001401 ORTHO05D006368 1.9e-07 60.1 101 43.6
BolC9t54175H Brassica oleracea HOM05D001401 ORTHO05D006368 1.9e-07 60.1 101 43.6
Medtr4g068880 Medicago truncatula HOM05D001401 ORTHO05D006368 1.9e-07 60.1 66 59.1
PSO541G5534 Papaver somniferum HOM05D001401 ORTHO05D006368 1.9e-07 60.1 93 43.0
Sabra04G0099700 Salix brachista HOM05D001401 ORTHO05D006368 1.9e-07 60.1 101 41.6
A07p04770 Brassica napus HOM05D001401 ORTHO05D006368 2.5e-07 59.7 97 42.3
BraA07t28264Z Brassica rapa HOM05D001401 ORTHO05D006368 2.5e-07 59.7 97 42.3
Thecc.02G031200 Theobroma cacao HOM05D001401 ORTHO05D006368 2.5e-07 59.7 110 50.0
Gohir.A01G181100 Gossypium hirsutum HOM05D001401 ORTHO05D006368 4.3e-07 58.9 97 45.4
Cc02_g18020 Coffea canephora HOM05D001401 ORTHO05D006368 5.6e-07 58.5 84 51.2
PSO675G0936 Papaver somniferum HOM05D001401 ORTHO05D006368 5.6e-07 58.5 93 41.9
Carub.0003s2988 Capsella rubella HOM05D001401 ORTHO05D006368 7.3e-07 58.2 115 41.7
Manes.15G147100 Manihot esculenta HOM05D001401 ORTHO05D006368 7.3e-07 58.2 106 40.6
Nitab4.5_0003816g0020 Nicotiana tabacum HOM05D001401 ORTHO05D006368 7.3e-07 58.2 85 47.1
Solyc01g109260.3 Solanum lycopersicum HOM05D001401 ORTHO05D006368 9.5e-07 57.8 81 46.9
PGSC0003DMG400025176 Solanum tuberosum HOM05D001401 ORTHO05D006368 9.5e-07 57.8 81 46.9
TWI31G0569 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 9.5e-07 57.8 83 47.0
Actinidia27915 Actinidia chinensis HOM05D001401 ORTHO05D006368 1.2e-06 57.4 115 38.3
Ah.01g006390 Amaranthus hybridus HOM05D001401 ORTHO05D006368 1.2e-06 57.4 77 45.5
CANSAT25G1485 Cannabis sativa HOM05D001401 ORTHO05D006368 1.2e-06 57.4 77 59.7
Thhalv10022794m.g Eutrema salsugineum HOM05D001401 ORTHO05D006368 1.2e-06 57.4 110 46.4
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 1.2e-06 57.4 93 43.0
Sp3g29340 Schrenkiella parvula HOM05D001401 ORTHO05D006368 1.2e-06 57.4 114 38.6
BraA09t36729Z Brassica rapa HOM05D001401 ORTHO05D006368 1.6e-06 57.0 108 38.9
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 2.1e-06 56.6 109 38.5
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 2.1e-06 56.6 120 39.2
Sopen01g051420 Solanum pennellii HOM05D001401 ORTHO05D006368 2.1e-06 56.6 81 45.7
A09p10890 Brassica napus HOM05D001401 ORTHO05D006368 2.8e-06 56.2 108 38.9
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 3.6e-06 55.8 96 43.8
TAR628G1386 Trochodendron aralioides HOM05D001401 ORTHO05D006368 3.6e-06 55.8 98 40.8
PGR042G1488 Punica granatum HOM05D001401 ORTHO05D006368 4.7e-06 55.5 45 57.8
BcaC01g03041 Brassica carinata HOM05D001401 ORTHO05D006368 6.2e-06 55.1 114 35.1
C03p56790 Brassica napus HOM05D001401 ORTHO05D006368 6.2e-06 55.1 114 35.1
BolC3t17961H Brassica oleracea HOM05D001401 ORTHO05D006368 6.2e-06 55.1 114 35.1
Eucgr.I01238 Eucalyptus grandis HOM05D001401 ORTHO05D006368 6.2e-06 55.1 28 89.3
PSO170G2675 Papaver somniferum HOM05D001401 ORTHO05D006368 6.2e-06 55.1 95 42.1
PSO700G0268 Papaver somniferum HOM05D001401 ORTHO05D006368 6.2e-06 55.1 95 42.1
CAN.G322.101 Capsicum annuum HOM05D001401 ORTHO05D006368 8.0e-06 54.7 77 45.5


User provided reference genes

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