Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p039212 Quercus lobata HOM05D007083 ORTHO05D008801 7.0e-112 408.7 212 100.0
QL11p039208 Quercus lobata HOM05D007083 ORTHO05D008801 9.4e-101 371.7 238 84.0
CiPaw.06G139300 Carya illinoinensis HOM05D007083 ORTHO05D008801 2.5e-69 267.3 237 63.3
Cfa004946 Carpinus fangiana HOM05D007083 ORTHO05D008801 2.3e-62 244.2 229 62.0
Duzib052G0394 Durio zibethinus HOM05D007083 ORTHO05D008801 2.3e-54 217.6 243 53.1
Prupe.8G019300 Prunus persica HOM05D007083 ORTHO05D008801 7.3e-53 212.6 241 51.0
Manes.15G145600 Manihot esculenta HOM05D007083 ORTHO05D008801 6.2e-52 209.5 241 51.0
Thecc.02G028500 Theobroma cacao HOM05D007083 ORTHO05D008801 2.4e-51 207.6 241 51.0
Haze_02465 Corylus avellana HOM05D007083 ORTHO05D008801 3.4e-50 203.8 168 67.3
Gohir.D12G042300 Gossypium hirsutum HOM05D007083 ORTHO05D008801 2.2e-49 201.1 243 50.6
Gorai.008G044300 Gossypium raimondii HOM05D007083 ORTHO05D008801 3.8e-49 200.3 243 50.2
Ciclev10030406m.g Citrus clementina HOM05D007083 ORTHO05D008801 1.4e-48 198.4 243 49.8
Gohir.A12G030100 Gossypium hirsutum HOM05D007083 ORTHO05D008801 9.3e-48 195.7 243 49.8
CANSAT25G2501 Cannabis sativa HOM05D007083 ORTHO05D008801 1.2e-47 195.3 242 46.7
Cpa.g.sc109.26 Carica papaya HOM05D007083 ORTHO05D008801 3.5e-47 193.7 236 50.0
Dinv23578 Davidia involucrata HOM05D007083 ORTHO05D008801 3.3e-45 187.2 238 48.3
Sabra18G0050700 Salix brachista HOM05D007083 ORTHO05D008801 3.6e-44 183.7 246 45.1
Potri.004G147700 Populus trichocarpa HOM05D007083 ORTHO05D008801 4.8e-44 183.3 246 45.1
Lj2P412T37 Lonicera japonica HOM05D007083 ORTHO05D008801 3.4e-42 177.2 241 45.2
CSS0008892 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 2.2e-41 174.5 231 45.5
CSS0024065 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 2.2e-41 174.5 231 45.5
CARHR106000 Cardamine hirsuta HOM05D007083 ORTHO05D008801 7.1e-40 169.5 185 49.7
GSVIVG01029769001 Vitis vinifera HOM05D007083 ORTHO05D008801 1.0e-38 165.6 181 50.8
Rhsim05G0078900 Rhododendron simsii HOM05D007083 ORTHO05D008801 3.9e-38 163.7 238 40.3
Actinidia17838 Actinidia chinensis HOM05D007083 ORTHO05D008801 5.1e-38 163.3 219 47.0
TAR369G0752 Trochodendron aralioides HOM05D007083 ORTHO05D008801 1.5e-37 161.8 241 41.5
AT2G15630 Arabidopsis thaliana HOM05D007083 ORTHO05D008801 4.3e-37 160.2 215 43.3
COL.COLO4_17774 Corchorus olitorius HOM05D007083 ORTHO05D008801 7.3e-37 159.5 163 57.1
Atru.chr5.2875 Acer truncatum HOM05D007083 ORTHO05D008801 2.8e-36 157.5 205 47.8
AL3G47400 Arabidopsis lyrata HOM05D007083 ORTHO05D008801 1.1e-35 155.6 214 42.5
Aa31LG8G13290 Aethionema arabicum HOM05D007083 ORTHO05D008801 1.8e-35 154.8 232 42.2
Atru.chr13.1400 Acer truncatum HOM05D007083 ORTHO05D008801 5.3e-35 153.3 222 47.7
FAN20G1975 Fragaria x ananassa HOM05D007083 ORTHO05D008801 5.3e-35 153.3 236 44.1
A07p05120 Brassica napus HOM05D007083 ORTHO05D008801 6.9e-35 152.9 215 44.2
BcaC06g36074 Brassica carinata HOM05D007083 ORTHO05D008801 1.2e-34 152.1 200 43.5
BolC7t41234H Brassica oleracea HOM05D007083 ORTHO05D008801 1.2e-34 152.1 200 43.5
BraA07t28306Z Brassica rapa HOM05D007083 ORTHO05D008801 2.6e-34 151.0 215 43.7
Glyma.12G048300 Glycine max HOM05D007083 ORTHO05D008801 2.6e-34 151.0 218 45.0
Sp3g28900 Schrenkiella parvula HOM05D007083 ORTHO05D008801 2.6e-34 151.0 220 44.5
C07p08180 Brassica napus HOM05D007083 ORTHO05D008801 3.4e-34 150.6 200 43.0
PGR042G0769 Punica granatum HOM05D007083 ORTHO05D008801 3.4e-34 150.6 184 47.3
Phvul.001G085800 Phaseolus vulgaris HOM05D007083 ORTHO05D008801 1.7e-33 148.3 186 45.7
BcaB03g14591 Brassica carinata HOM05D007083 ORTHO05D008801 2.9e-33 147.5 204 42.2
arahy.Tifrunner.gnm1.ann1.JD2ZC9 Arachis hypogaea HOM05D007083 ORTHO05D008801 3.8e-33 147.1 215 42.8
VMungo1383G2401 Vigna mungo HOM05D007083 ORTHO05D008801 4.9e-33 146.7 211 43.6
Eucgr.J00091 Eucalyptus grandis HOM05D007083 ORTHO05D008801 8.4e-33 146.0 240 41.2
PGSC0003DMG400025930 Solanum tuberosum HOM05D007083 ORTHO05D008801 8.4e-33 146.0 184 45.1
Sopen01g051260 Solanum pennellii HOM05D007083 ORTHO05D008801 1.4e-32 145.2 184 44.6
EL10Ac9g21792 Beta vulgaris HOM05D007083 ORTHO05D008801 5.5e-32 143.3 209 41.6
Solyc01g109060.4 Solanum lycopersicum HOM05D007083 ORTHO05D008801 5.5e-32 143.3 184 45.1
CAN.G322.86 Capsicum annuum HOM05D007083 ORTHO05D008801 1.2e-31 142.1 209 43.5
FAN24G0977 Fragaria x ananassa HOM05D007083 ORTHO05D008801 1.2e-31 142.1 225 42.2
Glyma.11G123700 Glycine max HOM05D007083 ORTHO05D008801 1.2e-31 142.1 170 47.6
DCAR_003627 Daucus carota HOM05D007083 ORTHO05D008801 3.5e-31 140.6 241 41.9
HanXRQChr12g0374971 Helianthus annuus HOM05D007083 ORTHO05D008801 1.0e-30 139.0 201 42.3
Lsat_1_v5_gn_0_45320 Lactuca sativa HOM05D007083 ORTHO05D008801 1.0e-30 139.0 187 43.3
Lsat_1_v5_gn_5_117460 Lactuca sativa HOM05D007083 ORTHO05D008801 1.0e-30 139.0 187 43.3
RcHm_v2.0_Chr6g0259961 Rosa chinensis HOM05D007083 ORTHO05D008801 1.0e-30 139.0 222 40.1
AUR62011398 Chenopodium quinoa HOM05D007083 ORTHO05D008801 2.3e-30 137.9 235 37.9
TWI31G0787 Tripterygium wilfordii HOM05D007083 ORTHO05D008801 2.3e-30 137.9 221 42.5
Nn7g35939 Nelumbo nucifera HOM05D007083 ORTHO05D008801 3.9e-30 137.1 218 39.0
Thhalv10022592m.g Eutrema salsugineum HOM05D007083 ORTHO05D008801 5.1e-30 136.7 218 37.2
arahy.Tifrunner.gnm1.ann1.CNDX61 Arachis hypogaea HOM05D007083 ORTHO05D008801 1.1e-29 135.6 220 40.5
FvH4_2g07360 Fragaria vesca HOM05D007083 ORTHO05D008801 1.1e-29 135.6 225 40.0
Lj3g0002320 Lotus japonicus HOM05D007083 ORTHO05D008801 1.5e-29 135.2 219 40.2
Nitab4.5_0001401g0200 Nicotiana tabacum HOM05D007083 ORTHO05D008801 1.9e-29 134.8 188 43.6
AUR62016660 Chenopodium quinoa HOM05D007083 ORTHO05D008801 7.4e-29 132.9 182 43.4
Sabra04G0098000 Salix brachista HOM05D007083 ORTHO05D008801 7.4e-29 132.9 148 48.6
Medtr4g068360 Medicago truncatula HOM05D007083 ORTHO05D008801 9.6e-29 132.5 187 41.2
Sc18g0004860 Simmondsia chinensis HOM05D007083 ORTHO05D008801 1.3e-28 132.1 237 36.3
Cc02_g18190 Coffea canephora HOM05D007083 ORTHO05D008801 2.1e-28 131.3 184 42.9
MSTRG.5378 Avicennia marina HOM05D007083 ORTHO05D008801 6.2e-28 129.8 237 37.6
SHI08173 Sapria himalayana HOM05D007083 ORTHO05D008801 8.1e-28 129.4 187 41.7
Sc18g0004780 Simmondsia chinensis HOM05D007083 ORTHO05D008801 2.4e-27 127.9 180 40.6
Potri.009G109001 Populus trichocarpa HOM05D007083 ORTHO05D008801 4.0e-27 127.1 161 42.9
ClCG02G005520 Citrullus lanatus HOM05D007083 ORTHO05D008801 9.0e-27 125.9 199 43.7
THA.LOC104819595 Tarenaya hassleriana HOM05D007083 ORTHO05D008801 9.0e-27 125.9 231 39.0
Ah.01g019870 Amaranthus hybridus HOM05D007083 ORTHO05D008801 1.5e-26 125.2 202 38.6
MBI19_g17433_MAGBIO Magnolia biondii HOM05D007083 ORTHO05D008801 1.5e-26 125.2 182 41.2
MELO3C018417.2 Cucumis melo HOM05D007083 ORTHO05D008801 2.6e-26 124.4 193 43.5
Sed0019239 Sechium edule HOM05D007083 ORTHO05D008801 1.0e-25 122.5 152 48.0
CsaV3_7G010110 Cucumis sativus L. HOM05D007083 ORTHO05D008801 4.9e-25 120.2 193 42.0
Ca_20820_v3 Cicer arietinum L. HOM05D007083 ORTHO05D008801 1.1e-24 119.0 185 41.6
ECA236G1626 Erigeron canadensis HOM05D007083 ORTHO05D008801 5.1e-22 110.2 177 40.1
HPP92_019625 Vanilla planifolia HOM05D007083 ORTHO05D008801 5.0e-17 93.6 181 34.3
SalBow3G3241 Salvia bowleyana HOM05D001193 ORTHO05D001016 2.5e-16 91.3 208 35.1
Migut.N01212 Erythranthe guttata HOM05D007083 ORTHO05D008801 9.3e-16 89.4 207 35.3
ATR0598G052 Amborella trichopoda HOM05D007083 ORTHO05D008801 1.6e-15 88.6 174 33.3
Aqoxy7G03503 Aquilegia oxysepala HOM05D007083 ORTHO05D008801 3.5e-15 87.4 206 34.0
PSO339G4029 Papaver somniferum HOM05D007083 ORTHO05D008801 4.8e-12 77.0 214 30.8
Atru.BG.59.p Acer truncatum HOM05D007083 ORTHO05D008801 8.2e-12 76.3 91 51.6
Gohir.A04G115700 Gossypium hirsutum HOM05D007083 ORTHO05D008801 1.1e-11 75.9 47 70.2
Carub.0003s2940 Capsella rubella HOM05D007083 ORTHO05D008801 3.4e-10 70.9 47 66.0
RcHm_v2.0_Chr6g0260661 Rosa chinensis HOM05D007083 ORTHO05D008801 8.5e-09 66.2 42 69.0
RcHm_v2.0_Chr6g0260161 Rosa chinensis HOM05D007083 ORTHO05D008801 1.9e-08 65.1 42 66.7
RcHm_v2.0_Chr6g0260391 Rosa chinensis HOM05D007083 ORTHO05D008801 1.9e-08 65.1 40 70.0
RcHm_v2.0_Chr6g0260531 Rosa chinensis HOM05D007083 ORTHO05D008801 1.9e-08 65.1 42 66.7
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 5.5e-08 63.5 163 28.2
RcHm_v2.0_Chr2g0124591 Rosa chinensis HOM05D007083 ORTHO05D008801 7.2e-08 63.2 42 69.0
RcHm_v2.0_Chr6g0266771 Rosa chinensis HOM05D007083 ORTHO05D008801 9.4e-08 62.8 42 66.7
Psat7g208080 Pisum sativum HOM05D007083 ORTHO05D008801 1.6e-07 62.0 47 55.3
RcHm_v2.0_Chr6g0260761 Rosa chinensis HOM05D007083 ORTHO05D008801 2.1e-07 61.6 40 65.0


User provided reference genes

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