Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p039030 Quercus lobata HOM05D006662 ORTHO05D008378 9.4e-113 410.2 210 100.0
QL11p040314 Quercus lobata HOM05D006662 ORTHO05D008378 1.8e-108 396.0 210 96.2
CiPaw.05G058200 Carya illinoinensis HOM05D006662 ORTHO05D008378 1.4e-79 300.1 211 73.5
Cfa004939 Carpinus fangiana HOM05D006662 ORTHO05D008378 2.2e-77 292.7 214 72.0
Potri.009G108200 Populus trichocarpa HOM05D006662 ORTHO05D008378 3.0e-74 282.3 213 69.0
Manes.17G095800 Manihot esculenta HOM05D006662 ORTHO05D008378 5.1e-74 281.6 211 68.7
Thecc.02G093600 Theobroma cacao HOM05D006662 ORTHO05D008378 2.5e-73 279.3 213 70.0
Cpa.g.sc62.73 Carica papaya HOM05D006662 ORTHO05D008378 3.3e-73 278.9 212 67.5
CANSAT25G1076 Cannabis sativa HOM05D006662 ORTHO05D008378 5.6e-73 278.1 210 66.7
Sed0006883 Sechium edule HOM05D006662 ORTHO05D008378 6.2e-72 274.6 202 67.8
MD10G1087700 Malus domestica HOM05D006662 ORTHO05D008378 2.3e-71 272.7 211 66.4
arahy.Tifrunner.gnm1.ann1.XIH6CG Arachis hypogaea HOM05D006662 ORTHO05D008378 1.2e-70 270.4 209 65.1
ClCG09G017640 Citrullus lanatus HOM05D006662 ORTHO05D008378 1.5e-70 270.0 215 65.6
Haze_02471 Corylus avellana HOM05D006662 ORTHO05D008378 1.5e-70 270.0 237 63.7
Glyma.02G136700 Glycine max HOM05D006662 ORTHO05D008378 3.4e-70 268.9 209 61.2
arahy.Tifrunner.gnm1.ann1.WYH7K2 Arachis hypogaea HOM05D006662 ORTHO05D008378 5.8e-70 268.1 209 64.1
Hma1.2p1_0584F.1_g183200 Hydrangea macrophylla HOM05D006662 ORTHO05D008378 7.5e-70 267.7 211 65.4
Sed0017443 Sechium edule HOM05D006662 ORTHO05D008378 1.1e-68 263.8 175 72.6
Eucgr.I01209 Eucalyptus grandis HOM05D006662 ORTHO05D008378 1.4e-68 263.5 216 63.9
MD05G1073200 Malus domestica HOM05D006662 ORTHO05D008378 1.4e-68 263.5 213 63.4
Prupe.8G113800 Prunus persica HOM05D006662 ORTHO05D008378 1.4e-68 263.5 216 62.5
TWI75G0095 Tripterygium wilfordii HOM05D006662 ORTHO05D008378 1.9e-68 263.1 216 61.6
Manes.15G144700 Manihot esculenta HOM05D006662 ORTHO05D008378 5.4e-68 261.5 198 64.6
PGR142G1799 Punica granatum HOM05D006662 ORTHO05D008378 5.4e-68 261.5 213 62.0
Gohir.A12G027000 Gossypium hirsutum HOM05D006662 ORTHO05D008378 1.6e-67 260.0 213 64.3
Gohir.D12G026500 Gossypium hirsutum HOM05D006662 ORTHO05D008378 3.5e-67 258.8 212 64.6
MELO3C021923.2 Cucumis melo HOM05D006662 ORTHO05D008378 7.8e-67 257.7 212 64.6
RcHm_v2.0_Chr6g0259611 Rosa chinensis HOM05D006662 ORTHO05D008378 1.7e-66 256.5 212 62.3
VMungo0251G2580 Vigna mungo HOM05D006662 ORTHO05D008378 3.0e-66 255.8 209 59.8
Sabra09G0082500 Salix brachista HOM05D006662 ORTHO05D008378 3.9e-66 255.4 206 65.5
FAN20G1592 Fragaria x ananassa HOM05D006662 ORTHO05D008378 8.6e-66 254.2 167 72.5
Lj4g0000402 Lotus japonicus HOM05D006662 ORTHO05D008378 1.1e-65 253.8 208 61.1
FAN15G0063 Fragaria x ananassa HOM05D006662 ORTHO05D008378 1.5e-65 253.4 211 61.1
Ca_18646_v3 Cicer arietinum L. HOM05D006662 ORTHO05D008378 4.3e-65 251.9 198 60.1
TWI79G0535 Tripterygium wilfordii HOM05D006662 ORTHO05D008378 9.6e-65 250.8 171 69.6
CSS0011742 Camellia sinensis var. sinensis HOM05D006662 ORTHO05D008378 1.2e-64 250.4 212 62.7
FvH4_2g07110 Fragaria vesca HOM05D006662 ORTHO05D008378 1.2e-64 250.4 211 61.6
GSVIVG01031844001 Vitis vinifera HOM05D006662 ORTHO05D008378 1.2e-64 250.4 187 66.3
CsaV3_2G014240 Cucumis sativus L. HOM05D006662 ORTHO05D008378 2.8e-64 249.2 216 61.1
HanXRQChr16g0505251 Helianthus annuus HOM05D006662 ORTHO05D008378 6.2e-64 248.1 178 65.7
Lalb_Chr05g0218931 Lupinus albus HOM05D006662 ORTHO05D008378 6.2e-64 248.1 207 60.4
Phvul.003G295900 Phaseolus vulgaris HOM05D006662 ORTHO05D008378 6.2e-64 248.1 166 71.1
Gorai.008G026800 Gossypium raimondii HOM05D006662 ORTHO05D008378 2.4e-63 246.1 239 57.7
Lsat_1_v5_gn_7_87521 Lactuca sativa HOM05D006662 ORTHO05D008378 5.2e-63 245.0 180 65.0
Lalb_Chr16g0384501 Lupinus albus HOM05D006662 ORTHO05D008378 6.8e-63 244.6 209 58.9
COL.COLO4_11735 Corchorus olitorius HOM05D006662 ORTHO05D008378 8.9e-63 244.2 208 62.0
Ciclev10029278m.g Citrus clementina HOM05D006662 ORTHO05D008378 1.2e-62 243.8 209 61.7
Solyc01g108910.4 Solanum lycopersicum HOM05D006662 ORTHO05D008378 2.6e-62 242.7 169 67.5
TAR625G0716 Trochodendron aralioides HOM05D006662 ORTHO05D008378 3.4e-62 242.3 211 61.6
Sopen01g051110 Solanum pennellii HOM05D006662 ORTHO05D008378 7.6e-62 241.1 169 66.9
Glyma.07G208750 Glycine max HOM05D006662 ORTHO05D000003 9.9e-62 240.7 198 59.1
Nn6g32129 Nelumbo nucifera HOM05D006662 ORTHO05D008378 9.9e-62 240.7 211 60.2
Peaxi162Scf00016g01334 Petunia axillaris HOM05D006662 ORTHO05D008378 9.9e-62 240.7 170 68.2
THA.LOC104807344 Tarenaya hassleriana HOM05D006662 ORTHO05D008378 9.9e-62 240.7 214 58.9
DCAR_022073 Daucus carota HOM05D006662 ORTHO05D008378 1.3e-61 240.4 177 65.5
PGSC0003DMG400025927 Solanum tuberosum HOM05D006662 ORTHO05D008378 2.2e-61 239.6 175 64.6
Ciclev10029277m.g Citrus clementina HOM05D006662 ORTHO05D008378 3.8e-61 238.8 209 59.8
Oeu034073.1 Olea europaea HOM05D006662 ORTHO05D008378 3.8e-61 238.8 167 65.3
Oeu034074.1 Olea europaea HOM05D006662 ORTHO05D008378 6.4e-61 238.0 191 58.6
MSTRG.16773 Avicennia marina HOM05D006662 ORTHO05D008378 1.1e-60 237.3 179 61.5
Nitab4.5_0001401g0110 Nicotiana tabacum HOM05D006662 ORTHO05D008378 1.1e-60 237.3 196 60.2
Atru.chr5.2838 Acer truncatum HOM05D006662 ORTHO05D008378 2.4e-60 236.1 223 58.3
Cc02_g18370 Coffea canephora HOM05D006662 ORTHO05D008378 3.2e-60 235.7 203 60.6
Nitab4.5_0013034g0030 Nicotiana tabacum HOM05D006662 ORTHO05D008378 3.2e-60 235.7 164 67.7
Ah.01g019950 Amaranthus hybridus HOM05D006662 ORTHO05D008378 5.4e-60 235.0 207 56.5
TPR.G23518 Trifolium pratense HOM05D006662 ORTHO05D008378 1.2e-59 233.8 210 54.8
TAR381G0443 Trochodendron aralioides HOM05D006662 ORTHO05D008378 1.6e-59 233.4 212 59.0
Duzib132G0812 Durio zibethinus HOM05D006662 ORTHO05D008378 3.0e-58 229.2 205 60.5
Sc18g0004870 Simmondsia chinensis HOM05D006662 ORTHO05D008378 3.9e-58 228.8 212 55.2
MSTRG.20127 Avicennia marina HOM05D006662 ORTHO05D008378 5.1e-58 228.4 171 61.4
MBI16_g19891_MAGBIO Magnolia biondii HOM05D006662 ORTHO05D008378 5.1e-58 228.4 170 64.1
ECA236G2218 Erigeron canadensis HOM05D001803 ORTHO05D001686 2.5e-57 226.1 176 60.8
unitig_60.g25450 Utricularia gibba HOM05D006662 ORTHO05D008378 2.5e-57 226.1 171 63.2
ECA234G3259 Erigeron canadensis HOM05D006662 ORTHO05D008378 3.3e-57 225.7 199 56.3
Psat7g120680 Pisum sativum HOM05D006662 ORTHO05D008378 4.3e-57 225.3 169 60.4
Medtr4g087160 Medicago truncatula HOM05D006662 ORTHO05D008378 7.3e-57 224.6 164 62.2
AL3G47680 Arabidopsis lyrata HOM05D006662 ORTHO05D008378 2.1e-56 223.0 170 67.1
AT2G15890 Arabidopsis thaliana HOM05D006662 ORTHO05D008378 1.1e-55 220.7 172 66.3
Oeu057667.1 Olea europaea HOM05D006662 ORTHO05D008378 2.4e-55 219.5 167 63.5
Aa31LG8G13410 Aethionema arabicum HOM05D006662 ORTHO05D008378 5.3e-55 218.4 217 55.3
CARHR106220 Cardamine hirsuta HOM05D006662 ORTHO05D008378 5.3e-55 218.4 172 66.3
BcaB08g34616 Brassica carinata HOM05D006662 ORTHO05D008378 1.5e-54 216.9 169 64.5
A03p45640 Brassica napus HOM05D006662 ORTHO05D008378 2.0e-54 216.5 172 63.4
BcaC01g03048 Brassica carinata HOM05D006662 ORTHO05D008378 2.6e-54 216.1 172 62.8
C03p56690 Brassica napus HOM05D006662 ORTHO05D008378 2.6e-54 216.1 172 62.8
BolC3t17953H Brassica oleracea HOM05D006662 ORTHO05D008378 2.6e-54 216.1 172 62.8
AUR62016649 Chenopodium quinoa HOM05D006662 ORTHO05D008378 2.6e-54 216.1 207 53.6
Carub.0003s2977 Capsella rubella HOM05D006662 ORTHO05D008378 3.4e-54 215.7 174 63.2
AUR62011410 Chenopodium quinoa HOM05D006662 ORTHO05D008378 5.8e-54 214.9 176 58.0
Thhalv10022827m.g Eutrema salsugineum HOM05D006662 ORTHO05D008378 7.6e-54 214.5 178 63.5
BraA03t13696Z Brassica rapa HOM05D006662 ORTHO05D008378 9.9e-54 214.2 172 62.8
Sp3g29170 Schrenkiella parvula HOM05D006662 ORTHO05D008378 9.9e-54 214.2 217 57.6
CDE02G2985 Ceratophyllum demersum HOM05D006662 ORTHO05D008378 4.9e-53 211.8 213 53.1
PSO541G1188 Papaver somniferum HOM05D006662 ORTHO05D008378 6.4e-53 211.5 211 50.7
CDE04G2620 Ceratophyllum demersum HOM05D006662 ORTHO05D008378 2.4e-52 209.5 213 51.6
SGA_v2.0_scaffold32G13129 Striga asiatica HOM05D006662 ORTHO05D008378 1.6e-51 206.8 188 53.7
PSO675G4443 Papaver somniferum HOM05D006662 ORTHO05D008378 1.3e-50 203.8 213 50.7
ATR0733G082 Amborella trichopoda HOM05D006662 ORTHO05D008378 2.3e-50 203.0 173 60.1
Migut.B00297 Erythranthe guttata HOM05D006662 ORTHO05D008378 1.5e-49 200.3 145 63.4
SalBow6G2487 Salvia bowleyana HOM05D006662 ORTHO05D008378 1.9e-49 199.9 198 51.0
EL10Ac9g21803 Beta vulgaris HOM05D006662 ORTHO05D008378 9.6e-49 197.6 205 53.7
Aqoxy6G00923 Aquilegia oxysepala HOM05D006662 ORTHO05D008378 1.8e-47 193.4 181 53.0
Hund06197 Selenicereus undatus HOM05D006662 ORTHO05D008378 2.8e-40 169.5 237 42.6
HPP92_017773 Vanilla planifolia HOM05D006662 ORTHO05D008378 2.7e-35 152.9 194 41.8
Dinv23602 Davidia involucrata HOM05D000546 ORTHO05D000398 1.9e-33 146.7 122 64.8
Lj9A364T65 Lonicera japonica HOM05D006662 ORTHO05D008378 5.7e-33 145.2 209 40.7
Zm00001eb058550 Zea mays HOM05D006662 ORTHO05D008378 5.7e-33 145.2 166 43.4
Actinidia00472 Actinidia chinensis HOM05D006662 ORTHO05D008378 7.4e-33 144.8 168 45.2
Zm00001eb214110 Zea mays HOM05D006662 ORTHO05D008378 7.4e-33 144.8 167 42.5
SEGI_00093 Sequoiadendron giganteum HOM05D006662 ORTHO05D008378 1.4e-31 140.6 174 42.5
Duzib052G0855 Durio zibethinus HOM05D006662 ORTHO05D008378 6.1e-27 125.2 112 60.7
SMO351G0555 Selaginella moellendorffii HOM05D006662 ORTHO05D008378 2.9e-21 106.3 178 33.1
Pp3c25_14850 Physcomitrium patens HOM05D006662 ORTHO05D008378 5.0e-21 105.5 182 31.3
Peaxi162Scf00068g00075 Petunia axillaris HOM05D006662 ORTHO05D008378 1.4e-20 104.0 89 56.2
AagrBONN_evm.TU.Sc2ySwM_117.2125 Anthoceros agrestis HOM05D006662 ORTHO05D008378 2.1e-19 100.1 205 32.2
Mapoly0184s0005 Marchantia polymorpha HOM05D006662 ORTHO05D008378 2.0e-17 93.6 195 29.7
HanXRQChr16g0505241 Helianthus annuus HOM05D000009 ORTHO05D000008 7.4e-17 91.7 103 46.6
Os03g0765500 Oryza sativa ssp. japonica HOM05D006662 ORTHO05D008378 3.1e-15 86.3 129 34.9
Peaxi162Scf00140g10022 Petunia axillaris HOM05D006662 ORTHO05D008378 1.5e-14 84.0 100 46.0
Pp3c5_28350 Physcomitrium patens HOM05D006662 ORTHO05D008378 1.1e-09 67.8 176 25.6
Rhsim11G0170000 Rhododendron simsii HOM05D006662 ORTHO05D008378 1.5e-09 67.4 105 37.1
Cfa020839 Carpinus fangiana HOM05D006662 ORTHO05D008378 4.8e-08 62.4 50 62.0


User provided reference genes

Program Settings