Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p038331 Quercus lobata HOM05D002914 ORTHO05D003196 5.6e-38 161.4 153 100.0
Cfa005429 Carpinus fangiana HOM05D002914 ORTHO05D003196 2.5e-22 109.4 104 70.2
CiPaw.05G054900 Carya illinoinensis HOM05D002914 ORTHO05D003196 2.3e-20 102.8 104 73.1
Phvul.003G294100 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 2.6e-19 99.4 99 70.7
Hma1.2p1_0584F.1_g183120 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 5.8e-19 98.2 73 64.4
Manes.15G143200 Manihot esculenta HOM05D002914 ORTHO05D003196 7.5e-19 97.8 97 74.2
RcHm_v2.0_Chr6g0259071 Rosa chinensis HOM05D002914 ORTHO05D003196 7.5e-19 97.8 106 48.1
Prupe.8G116500 Prunus persica HOM05D002914 ORTHO05D003196 2.2e-18 96.3 75 84.0
Potri.004G144400 Populus trichocarpa HOM05D002914 ORTHO05D003196 2.9e-18 95.9 97 58.8
TAR628G0868 Trochodendron aralioides HOM05D002914 ORTHO05D003196 2.9e-18 95.9 102 58.8
FvH4_2g06840 Fragaria vesca HOM05D002914 ORTHO05D003196 6.4e-18 94.7 107 70.1
FAN15G1103 Fragaria x ananassa HOM05D002914 ORTHO05D003196 6.4e-18 94.7 107 69.2
Thecc.02G096100 Theobroma cacao HOM05D002914 ORTHO05D003196 6.4e-18 94.7 101 72.3
Dinv42126 Davidia involucrata HOM05D002914 ORTHO05D003196 8.3e-18 94.4 73 64.4
FAN20G0574 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.1e-17 94.0 107 69.2
FAN24G0092 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.1e-17 94.0 106 70.8
Eucgr.I01175 Eucalyptus grandis HOM05D002914 ORTHO05D003196 1.9e-17 93.2 74 71.6
Duzib248G0090 Durio zibethinus HOM05D002914 ORTHO05D003196 3.2e-17 92.4 70 62.9
Nn1g05872 Nelumbo nucifera HOM05D002914 ORTHO05D003196 3.2e-17 92.4 102 66.7
Glyma.07G210000 Glycine max HOM05D002914 ORTHO05D003196 5.4e-17 91.7 74 67.6
COL.COLO4_11718 Corchorus olitorius HOM05D002914 ORTHO05D003196 7.1e-17 91.3 96 72.9
DCAR_022064 Daucus carota HOM05D002914 ORTHO05D003196 7.1e-17 91.3 93 50.5
Sabra04G0095900 Salix brachista HOM05D002914 ORTHO05D003196 7.1e-17 91.3 97 63.9
Duzib052G1256 Durio zibethinus HOM05D002914 ORTHO05D003196 9.2e-17 90.9 100 50.0
Ca_18662_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 1.6e-16 90.1 99 67.7
VMungo0251G3532 Vigna mungo HOM05D002914 ORTHO05D003196 1.6e-16 90.1 98 63.3
Rhsim05G0080600 Rhododendron simsii HOM05D002914 ORTHO05D003196 2.7e-16 89.4 71 59.2
Glyma.02G134900 Glycine max HOM05D002914 ORTHO05D003196 4.6e-16 88.6 73 79.5
Psat7g121600 Pisum sativum HOM05D002914 ORTHO05D003196 4.6e-16 88.6 97 73.2
Nn5g30169 Nelumbo nucifera HOM05D002914 ORTHO05D003196 6.0e-16 88.2 96 60.4
Aqoxy5G01394 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 7.8e-16 87.8 100 44.0
Cpa.g.sc62.45 Carica papaya HOM05D002914 ORTHO05D003196 7.8e-16 87.8 103 64.1
TAR376G1047 Trochodendron aralioides HOM05D002914 ORTHO05D003196 7.8e-16 87.8 71 62.0
Sabra09G0081200 Salix brachista HOM05D002914 ORTHO05D003196 5.1e-15 85.1 99 57.6
Atru.chr13.614 Acer truncatum HOM05D002914 ORTHO05D003196 6.6e-15 84.7 102 44.1
ECA236G0292 Erigeron canadensis HOM05D002914 ORTHO05D003196 6.6e-15 84.7 74 51.4
SGA_v2.0_scaffold58G20610 Striga asiatica HOM05D002914 ORTHO05D003196 6.6e-15 84.7 73 52.1
Gohir.A13G037800 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.5e-14 83.6 97 69.1
Solyc01g108330.2 Solanum lycopersicum HOM05D002914 ORTHO05D003196 1.5e-14 83.6 73 60.3
Sopen01g050550 Solanum pennellii HOM05D002914 ORTHO05D003196 1.5e-14 83.6 73 60.3
Gohir.D13G036200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.9e-14 83.2 97 69.1
Medtr4g086780 Medicago truncatula HOM05D002914 ORTHO05D003196 1.9e-14 83.2 73 53.4
Peaxi162Scf00016g00161 Petunia axillaris HOM05D002914 ORTHO05D003196 1.9e-14 83.2 69 63.8
CiPaw.06G141400 Carya illinoinensis HOM05D002914 ORTHO05D003196 2.5e-14 82.8 103 68.9
Gorai.013G040900 Gossypium raimondii HOM05D002914 ORTHO05D003196 4.3e-14 82.0 97 72.2
HanXRQChr04g0128331 Helianthus annuus HOM05D002914 ORTHO05D003196 4.3e-14 82.0 73 47.9
Nitab4.5_0002462g0040 Nicotiana tabacum HOM05D002914 ORTHO05D003196 4.3e-14 82.0 40 87.5
Potri.009G106300 Populus trichocarpa HOM05D002914 ORTHO05D003196 4.3e-14 82.0 68 61.8
Thecc.08G014700 Theobroma cacao HOM05D002914 ORTHO05D003196 4.3e-14 82.0 41 78.0
PGR142G0527 Punica granatum HOM05D002914 ORTHO05D003196 5.6e-14 81.6 71 73.2
Atru.chr5.2809 Acer truncatum HOM05D002914 ORTHO05D003196 9.5e-14 80.9 101 44.6
CSS0030933 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 1.2e-13 80.5 73 74.0
CSS0032479 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 1.2e-13 80.5 73 74.0
Potri.014G035400 Populus trichocarpa HOM05D002914 ORTHO05D003196 1.2e-13 80.5 74 47.3
PGSC0003DMG400025804 Solanum tuberosum HOM05D002914 ORTHO05D003196 1.2e-13 80.5 73 57.5
SalBow6G6648 Salvia bowleyana HOM05D002914 ORTHO05D003196 2.1e-13 79.7 74 74.3
CSS0043526 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 2.8e-13 79.3 40 82.5
Lalb_Chr05g0219001 Lupinus albus HOM05D002914 ORTHO05D003196 3.6e-13 79.0 101 59.4
Hma1.2p1_1589F.1_g292395 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 4.7e-13 78.6 74 50.0
Hma1.2p1_2598F.1_g325150 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 4.7e-13 78.6 74 50.0
PSO170G6047 Papaver somniferum HOM05D002914 ORTHO05D003196 4.7e-13 78.6 41 78.0
TWI36G0119 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 4.7e-13 78.6 102 46.1
arahy.Tifrunner.gnm1.ann1.ZME7HS Arachis hypogaea HOM05D002914 ORTHO05D003196 6.2e-13 78.2 68 66.2
Lalb_Chr16g0384551 Lupinus albus HOM05D002914 ORTHO05D003196 6.2e-13 78.2 100 43.0
TAR625G1140 Trochodendron aralioides HOM05D002914 ORTHO05D003196 1.1e-12 77.4 69 63.8
Ca_15973_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 1.4e-12 77.0 72 50.0
Medtr3g101240 Medicago truncatula HOM05D002914 ORTHO05D003196 1.4e-12 77.0 68 52.9
TPR.G40737 Trifolium pratense HOM05D002914 ORTHO05D003196 1.4e-12 77.0 39 79.5
arahy.Tifrunner.gnm1.ann1.2E3RSG Arachis hypogaea HOM05D002914 ORTHO05D003196 1.8e-12 76.6 108 51.9
arahy.Tifrunner.gnm1.ann1.HH3ECB Arachis hypogaea HOM05D002914 ORTHO05D003196 1.8e-12 76.6 67 55.2
Oeu003691.1 Olea europaea HOM05D002914 ORTHO05D003196 1.8e-12 76.6 69 53.6
Gohir.A03G191200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.3e-12 76.3 101 49.5
HanXRQChr16g0509571 Helianthus annuus HOM05D002914 ORTHO05D003196 2.3e-12 76.3 70 47.1
Nitab4.5_0000876g0190 Nicotiana tabacum HOM05D002914 ORTHO05D003196 2.3e-12 76.3 74 47.3
Nitab4.5_0002673g0030 Nicotiana tabacum HOM05D002914 ORTHO05D003196 2.3e-12 76.3 41 78.0
TWI31G1086 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 2.3e-12 76.3 134 46.3
Migut.B00310 Erythranthe guttata HOM05D002914 ORTHO05D003196 3.1e-12 75.9 40 80.0
Glyma.04G036500 Glycine max HOM05D002914 ORTHO05D003196 3.1e-12 75.9 65 56.9
Psat5g044840 Pisum sativum HOM05D002914 ORTHO05D003196 3.1e-12 75.9 39 79.5
Ciclev10002811m.g Citrus clementina HOM05D002914 ORTHO05D003196 4.0e-12 75.5 82 56.1
Prupe.1G441900 Prunus persica HOM05D002914 ORTHO05D003196 4.0e-12 75.5 74 73.0
ClCG08G015580 Citrullus lanatus HOM05D002914 ORTHO05D003196 5.2e-12 75.1 76 55.3
Lalb_Chr09g0328151 Lupinus albus HOM05D002914 ORTHO05D003196 5.2e-12 75.1 40 75.0
Nitab4.5_0000876g0210 Nicotiana tabacum HOM05D002914 ORTHO05D003196 5.2e-12 75.1 41 75.6
Glyma.06G036600 Glycine max HOM05D002914 ORTHO05D003196 6.8e-12 74.7 65 55.4
Gorai.005G240100 Gossypium raimondii HOM05D002914 ORTHO05D003196 6.8e-12 74.7 101 54.5
Gohir.A06G015600 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.2e-11 73.9 40 75.0
Gohir.D06G013700 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.2e-11 73.9 40 75.0
Gorai.010G016300 Gossypium raimondii HOM05D002914 ORTHO05D003196 1.2e-11 73.9 40 75.0
CsaV3_2G028190 Cucumis sativus L. HOM05D002914 ORTHO05D003196 1.5e-11 73.6 72 48.6
Lj1g0002449 Lotus japonicus HOM05D002914 ORTHO05D003196 1.5e-11 73.6 39 76.9
MELO3C010895.2 Cucumis melo HOM05D002914 ORTHO05D003196 2.0e-11 73.2 41 68.3
Gohir.D02G212150 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.0e-11 73.2 101 53.5
Lalb_Chr23g0266911 Lupinus albus HOM05D002914 ORTHO05D003196 2.0e-11 73.2 66 51.5
Lj5P206T48 Lonicera japonica HOM05D002914 ORTHO05D003196 2.6e-11 72.8 42 81.0
Sc08g0000120 Simmondsia chinensis HOM05D002914 ORTHO05D003196 2.6e-11 72.8 74 67.6
COL.COLO4_26446 Corchorus olitorius HOM05D002914 ORTHO05D003196 4.4e-11 72.0 40 75.0
Oeu003693.1 Olea europaea HOM05D002914 ORTHO05D003196 4.4e-11 72.0 40 75.0
Oeu010582.1 Olea europaea HOM05D002914 ORTHO05D003196 4.4e-11 72.0 40 75.0
Oeu013680.1 Olea europaea HOM05D002914 ORTHO05D003196 7.6e-11 71.2 99 41.4
Sed0007891 Sechium edule HOM05D002914 ORTHO05D003196 9.9e-11 70.9 64 48.4
CDE01G0545 Ceratophyllum demersum HOM05D000767 ORTHO05D003196 1.3e-10 70.5 41 68.3
CDE02G0277 Ceratophyllum demersum HOM05D002914 ORTHO05D003196 1.3e-10 70.5 41 68.3
CsaV3_7G008810 Cucumis sativus L. HOM05D002914 ORTHO05D003196 1.7e-10 70.1 42 71.4
CANSAT25G0897 Cannabis sativa HOM05D002914 ORTHO05D003196 2.9e-10 69.3 38 68.4
FvH4_2g35030 Fragaria vesca HOM05D002914 ORTHO05D003196 2.9e-10 69.3 38 71.1
PSO675G1122 Papaver somniferum HOM05D000003 ORTHO05D001026 2.9e-10 69.3 36 69.4
Aqoxy6G00878 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 3.8e-10 68.9 76 43.4
Sed0019897 Sechium edule HOM05D002914 ORTHO05D003196 6.4e-10 68.2 102 34.3
FAN15G3578 Fragaria x ananassa HOM05D002914 ORTHO05D003196 8.4e-10 67.8 38 68.4
Sc15g0006440 Simmondsia chinensis HOM05D002914 ORTHO05D003196 8.4e-10 67.8 38 71.1
Manes.05G170100 Manihot esculenta HOM05D002914 ORTHO05D003196 1.1e-09 67.4 35 74.3
Ah.01g020080 Amaranthus hybridus HOM05D002914 ORTHO05D003196 1.4e-09 67.0 40 70.0
ClCG02G005720 Citrullus lanatus HOM05D002914 ORTHO05D003196 1.4e-09 67.0 62 64.5
MELO3C028578.2 Cucumis melo HOM05D002914 ORTHO05D003196 1.4e-09 67.0 41 70.7
QL02p006168 Quercus lobata HOM05D002914 ORTHO05D003196 1.9e-09 66.6 71 45.1
FAN20G2785 Fragaria x ananassa HOM05D002914 ORTHO05D003196 2.4e-09 66.2 38 65.8
Oeu007255.1 Olea europaea HOM05D002914 ORTHO05D003196 2.4e-09 66.2 68 50.0
RcHm_v2.0_Chr6g0306971 Rosa chinensis HOM05D002914 ORTHO05D003196 2.4e-09 66.2 35 71.4
THA.LOC104803788 Tarenaya hassleriana HOM05D002914 ORTHO05D003196 2.4e-09 66.2 40 57.5
EL10Ac9g21822 Beta vulgaris HOM05D002914 ORTHO05D003196 3.2e-09 65.9 41 63.4
Aa31LG5G9350 Aethionema arabicum HOM05D002914 ORTHO05D003196 4.1e-09 65.5 40 60.0
Sp4g07710 Schrenkiella parvula HOM05D002914 ORTHO05D003196 4.1e-09 65.5 41 58.5
SEGI_40351 Sequoiadendron giganteum HOM05D002914 ORTHO05D003196 1.2e-08 63.9 38 68.4
FAN27G2590 Fragaria x ananassa HOM05D002914 ORTHO05D003196 2.1e-08 63.2 38 63.2
Gohir.D02G092940 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.1e-08 63.2 97 30.9
Gorai.005G104900 Gossypium raimondii HOM05D002914 ORTHO05D003196 2.1e-08 63.2 97 30.9
AT2G26520 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 2.7e-08 62.8 40 55.0
PGR083G2546 Punica granatum HOM05D002914 ORTHO05D003196 2.7e-08 62.8 42 61.9
Phvul.001G135000 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 3.5e-08 62.4 41 61.0
AL4G19370 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 4.6e-08 62.0 40 55.0
Carub.0004s0669 Capsella rubella HOM05D002914 ORTHO05D003196 4.6e-08 62.0 40 55.0
VMungo1383G1568 Vigna mungo HOM05D002914 ORTHO05D003196 6.0e-08 61.6 41 61.0
Prupe.7G063700 Prunus persica HOM05D002914 ORTHO05D003196 1.3e-07 60.5 40 57.5
SEGI_00607 Sequoiadendron giganteum HOM05D002914 ORTHO05D003196 1.3e-07 60.5 36 61.1
Cpa.g.sc376.2 Carica papaya HOM05D002914 ORTHO05D003196 1.7e-07 60.1 73 42.5
Medtr7g091830 Medicago truncatula HOM05D002914 ORTHO05D003196 3.0e-07 59.3 41 58.5
FvH4_6g23590 Fragaria vesca HOM05D002914 ORTHO05D003196 3.9e-07 58.9 67 41.8
Glyma.19G140500 Glycine max HOM05D002914 ORTHO05D003196 3.9e-07 58.9 40 60.0
TPR.G27766 Trifolium pratense HOM05D002914 ORTHO05D003196 5.1e-07 58.5 41 58.5
ATR0225G004 Amborella trichopoda HOM05D002914 ORTHO05D003196 6.6e-07 58.2 74 41.9
Hma1.2p1_1847F.1_g305210 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 6.6e-07 58.2 38 60.5
RcHm_v2.0_Chr3g0481701 Rosa chinensis HOM05D002914 ORTHO05D003196 6.6e-07 58.2 62 41.9
CANSAT80G1635 Cannabis sativa HOM05D002914 ORTHO05D003196 8.6e-07 57.8 38 55.3
Lalb_Chr20g0110761 Lupinus albus HOM05D002914 ORTHO05D003196 8.6e-07 57.8 40 57.5
Peaxi162Scf00493g00035 Petunia axillaris HOM05D002914 ORTHO05D003196 8.6e-07 57.8 40 57.5
Ca_08467_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 1.1e-06 57.4 40 57.5
FAN09G0984 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.1e-06 57.4 67 40.3
SGA_v2.0_scaffold105G30420 Striga asiatica HOM05D002914 ORTHO05D003196 1.1e-06 57.4 43 53.5
Atru.chr1.1072 Acer truncatum HOM05D002914 ORTHO05D003196 1.5e-06 57.0 38 60.5
Gohir.A09G123100 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.5e-06 57.0 67 41.8
Gorai.006G137500 Gossypium raimondii HOM05D002914 ORTHO05D003196 1.5e-06 57.0 67 41.8
Psat3g072240 Pisum sativum HOM05D002914 ORTHO05D003196 1.5e-06 57.0 40 57.5
Ciclev10006230m.g Citrus clementina HOM05D002914 ORTHO05D003196 1.9e-06 56.6 69 49.3
Dinv18053 Davidia involucrata HOM05D002914 ORTHO05D003196 1.9e-06 56.6 38 60.5
Gohir.D09G120100 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.9e-06 56.6 67 41.8
HanXRQChr04g0128351 Helianthus annuus HOM05D001803 ORTHO05D001686 1.9e-06 56.6 27 74.1
Potri.006G052500 Populus trichocarpa HOM05D002914 ORTHO05D003196 1.9e-06 56.6 38 55.3
COL.COLO4_28237 Corchorus olitorius HOM05D002914 ORTHO05D003196 2.5e-06 56.2 38 57.9
Duzib093G1261 Durio zibethinus HOM05D002914 ORTHO05D003196 2.5e-06 56.2 38 57.9
Nitab4.5_0005892g0010 Nicotiana tabacum HOM05D002914 ORTHO05D003196 2.5e-06 56.2 38 60.5
Sed0010504 Sechium edule HOM05D002914 ORTHO05D003196 2.5e-06 56.2 44 56.8
Thecc.05G158000 Theobroma cacao HOM05D002914 ORTHO05D003196 2.5e-06 56.2 38 57.9
Lsat_1_v5_gn_5_161660 Lactuca sativa HOM05D002914 ORTHO05D003196 3.3e-06 55.8 38 55.3
CSS0032433 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 4.3e-06 55.5 38 57.9
CiPaw.09G037100 Carya illinoinensis HOM05D002914 ORTHO05D003196 4.3e-06 55.5 38 57.9
TAR623G0040 Trochodendron aralioides HOM05D002914 ORTHO05D003196 4.3e-06 55.5 38 57.9
HPP92_007074 Vanilla planifolia HOM05D002914 ORTHO05D003196 4.3e-06 55.5 41 58.5
Ah.05g168910 Amaranthus hybridus HOM05D002914 ORTHO05D003196 7.3e-06 54.7 39 56.4
EL10Ac3g07073 Beta vulgaris HOM05D002914 ORTHO05D003196 7.3e-06 54.7 38 52.6
Gohir.A01G132111 Gossypium hirsutum HOM05D002914 ORTHO05D003196 7.3e-06 54.7 38 55.3
Gorai.002G147700 Gossypium raimondii HOM05D002914 ORTHO05D003196 9.6e-06 54.3 38 55.3
Solyc04g015540.1 Solanum lycopersicum HOM05D002914 ORTHO05D003196 9.6e-06 54.3 38 55.3
Sopen04g007610 Solanum pennellii HOM05D002914 ORTHO05D003196 9.6e-06 54.3 38 55.3
PGSC0003DMG400027270 Solanum tuberosum HOM05D002914 ORTHO05D003196 9.6e-06 54.3 38 55.3
TWI74G1608 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 9.6e-06 54.3 38 52.6
unitig_22.g6856 Utricularia gibba HOM05D002914 ORTHO05D003196 9.6e-06 54.3 37 54.1


User provided reference genes

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