Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p035447 Quercus lobata HOM05D006107 ORTHO05D007455 2.7e-109 398.7 200 100.0
PGR042G0079 Punica granatum HOM05D006107 ORTHO05D007455 1.0e-36 157.5 90 90.0
Ca_18695_v3 Cicer arietinum L. HOM05D006107 ORTHO05D007455 5.2e-36 155.2 90 86.7
Lj4g0016203 Lotus japonicus HOM05D006107 ORTHO05D007455 5.2e-36 155.2 107 75.7
Haze_10087 Corylus avellana HOM05D006107 ORTHO05D007455 6.8e-36 154.8 107 76.6
QL11p035424 Quercus lobata HOM05D006107 ORTHO05D007455 8.9e-36 154.5 90 86.7
Cfa004529 Carpinus fangiana HOM05D006107 ORTHO05D007455 1.2e-35 154.1 90 86.7
TPR.G12695 Trifolium pratense HOM05D006107 ORTHO05D007455 1.2e-35 154.1 90 85.6
Lalb_Chr16g0384781 Lupinus albus HOM05D006107 ORTHO05D007455 1.5e-35 153.7 90 86.7
Glyma.02G131500 Glycine max HOM05D006107 ORTHO05D007455 2.0e-35 153.3 90 85.6
Glyma.07G213500 Glycine max HOM05D006107 ORTHO05D007455 2.0e-35 153.3 90 85.6
Phvul.003G291600 Phaseolus vulgaris HOM05D006107 ORTHO05D007455 2.0e-35 153.3 90 85.6
Psat7g125400 Pisum sativum HOM05D006107 ORTHO05D007455 2.0e-35 153.3 90 84.4
VMungo0251G2128 Vigna mungo HOM05D006107 ORTHO05D007455 2.0e-35 153.3 90 85.6
arahy.Tifrunner.gnm1.ann1.H5D5IL Arachis hypogaea HOM05D006107 ORTHO05D007455 2.6e-35 152.9 90 84.4
arahy.Tifrunner.gnm1.ann1.Q9TTL4 Arachis hypogaea HOM05D006107 ORTHO05D007455 2.6e-35 152.9 90 84.4
Medtr4g085890 Medicago truncatula HOM05D006107 ORTHO05D007455 2.6e-35 152.9 90 84.4
GSVIVG01031728001 Vitis vinifera HOM05D006107 ORTHO05D007455 2.6e-35 152.9 90 84.4
CiPaw.05G007100 Carya illinoinensis HOM05D006107 ORTHO05D007455 3.4e-35 152.5 90 85.6
TWI31G1484 Tripterygium wilfordii HOM05D006107 ORTHO05D007455 3.4e-35 152.5 90 85.6
Ciclev10028103m.g Citrus clementina HOM05D006107 ORTHO05D007455 5.8e-35 151.8 90 83.3
Eucgr.G01434 Eucalyptus grandis HOM05D006107 ORTHO05D007455 5.8e-35 151.8 90 85.6
Peaxi162Scf00016g01935 Petunia axillaris HOM05D006107 ORTHO05D007455 5.8e-35 151.8 90 81.1
Sed0010263 Sechium edule HOM05D006107 ORTHO05D007455 5.8e-35 151.8 90 84.4
Manes.07G078100 Manihot esculenta HOM05D006107 ORTHO05D007455 7.5e-35 151.4 107 73.8
CsaV3_7G008530 Cucumis sativus L. HOM05D006107 ORTHO05D007455 9.8e-35 151.0 90 83.3
Atru.chr5.2684 Acer truncatum HOM05D006107 ORTHO05D007455 1.3e-34 150.6 90 84.4
Hma1.2p1_0474F.1_g160480 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 1.7e-34 150.2 90 82.2
Prupe.8G126800 Prunus persica HOM05D006107 ORTHO05D007455 1.7e-34 150.2 90 83.3
RcHm_v2.0_Chr6g0257681 Rosa chinensis HOM05D006107 ORTHO05D007455 1.7e-34 150.2 90 82.2
Cc02_g18880 Coffea canephora HOM05D006107 ORTHO05D007455 4.9e-34 148.7 90 81.1
Dinv42164 Davidia involucrata HOM05D006107 ORTHO05D007455 6.4e-34 148.3 90 82.2
Potri.009G100800 Populus trichocarpa HOM05D006107 ORTHO05D007455 8.3e-34 147.9 90 82.2
CSS0002619 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 1.1e-33 147.5 90 81.1
CSS0005791 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 1.1e-33 147.5 90 81.1
Lj5A210T89 Lonicera japonica HOM05D006107 ORTHO05D007455 1.1e-33 147.5 90 78.9
PSO675G2583 Papaver somniferum HOM05D006107 ORTHO05D007455 1.1e-33 147.5 91 79.1
MD05G1082300 Malus domestica HOM05D006107 ORTHO05D007455 1.4e-33 147.1 90 80.0
Migut.B00356 Erythranthe guttata HOM05D006107 ORTHO05D007455 1.8e-33 146.7 80 88.8
Thecc.02G102000 Theobroma cacao HOM05D006107 ORTHO05D007455 1.8e-33 146.7 90 80.0
TAR376G0662 Trochodendron aralioides HOM05D006107 ORTHO05D007455 1.8e-33 146.7 90 81.1
EL10Ac1g02230 Beta vulgaris HOM05D006107 ORTHO05D007455 2.4e-33 146.4 90 76.7
Sabra09G0076700 Salix brachista HOM05D006107 ORTHO05D007455 2.4e-33 146.4 90 80.0
Hund06173 Selenicereus undatus HOM05D006107 ORTHO05D007455 2.4e-33 146.4 90 78.9
Duzib132G0557 Durio zibethinus HOM05D006107 ORTHO05D007455 4.1e-33 145.6 90 78.9
FvH4_2g05870 Fragaria vesca HOM05D006107 ORTHO05D007455 4.1e-33 145.6 90 77.8
FAN15G1599 Fragaria x ananassa HOM05D006107 ORTHO05D007455 4.1e-33 145.6 90 77.8
FAN20G2345 Fragaria x ananassa HOM05D006107 ORTHO05D007455 4.1e-33 145.6 90 77.8
FAN24G1318 Fragaria x ananassa HOM05D006107 ORTHO05D007455 4.1e-33 145.6 90 77.8
FAN27G3033 Fragaria x ananassa HOM05D006107 ORTHO05D007455 4.1e-33 145.6 90 77.8
Gohir.A12G023600 Gossypium hirsutum HOM05D006107 ORTHO05D007455 4.1e-33 145.6 90 78.9
Gohir.D12G024200 Gossypium hirsutum HOM05D006107 ORTHO05D007455 4.1e-33 145.6 90 78.9
Gorai.008G024600 Gossypium raimondii HOM05D006107 ORTHO05D007455 4.1e-33 145.6 90 78.9
Lsat_1_v5_gn_7_86820 Lactuca sativa HOM05D006107 ORTHO05D007455 4.1e-33 145.6 126 58.7
Nitab4.5_0018866g0010 Nicotiana tabacum HOM05D006107 ORTHO05D007455 4.1e-33 145.6 90 76.7
SGA_v2.0_scaffold90G27632 Striga asiatica HOM05D006107 ORTHO05D007455 4.1e-33 145.6 90 78.9
Rhsim05G0085900 Rhododendron simsii HOM05D006107 ORTHO05D007455 5.4e-33 145.2 90 78.9
CAN.G1041.37 Capsicum annuum HOM05D006107 ORTHO05D007455 9.2e-33 144.4 90 75.6
COL.COLO4_32644 Corchorus olitorius HOM05D006107 ORTHO05D007455 9.2e-33 144.4 90 80.0
Sc18g0004170 Simmondsia chinensis HOM05D006107 ORTHO05D007455 9.2e-33 144.4 90 74.4
Actinidia17868 Actinidia chinensis HOM05D006107 ORTHO05D007455 1.2e-32 144.1 90 80.0
PSO541G4551 Papaver somniferum HOM05D006107 ORTHO05D007455 1.2e-32 144.1 90 78.9
BcaB03g11861 Brassica carinata HOM05D006107 ORTHO05D007455 2.0e-32 143.3 90 77.8
A08p17180 Brassica napus HOM05D006107 ORTHO05D007455 2.0e-32 143.3 90 77.8
BraA08t33679Z Brassica rapa HOM05D006107 ORTHO05D007455 2.0e-32 143.3 90 77.8
Thhalv10024753m.g Eutrema salsugineum HOM05D006107 ORTHO05D007455 2.0e-32 143.3 90 77.8
MBI03_g13479_MAGBIO Magnolia biondii HOM05D006107 ORTHO05D007455 2.0e-32 143.3 90 78.9
PGSC0003DMG400025888 Solanum tuberosum HOM05D006107 ORTHO05D007455 2.0e-32 143.3 90 74.4
Aqoxy6G01306 Aquilegia oxysepala HOM05D006107 ORTHO05D007455 2.7e-32 142.9 90 76.7
CARHR242170 Cardamine hirsuta HOM05D006107 ORTHO05D007455 2.7e-32 142.9 90 76.7
AUR62035403 Chenopodium quinoa HOM05D006107 ORTHO05D007455 2.7e-32 142.9 89 74.2
RcHm_v2.0_Chr6g0257701 Rosa chinensis HOM05D006107 ORTHO05D007455 2.7e-32 142.9 90 76.7
Sp7g31760 Schrenkiella parvula HOM05D006107 ORTHO05D007455 2.7e-32 142.9 90 76.7
ATR1126G046 Amborella trichopoda HOM05D006107 ORTHO05D007455 3.5e-32 142.5 107 70.1
AagrBONN_evm.TU.Sc2ySwM_368.3420 Anthoceros agrestis HOM05D006107 ORTHO05D007455 3.5e-32 142.5 82 82.9
Nn5g30280 Nelumbo nucifera HOM05D006107 ORTHO05D007455 3.5e-32 142.5 90 77.8
SEGI_09747 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 3.5e-32 142.5 90 76.7
BcaC01g00937 Brassica carinata HOM05D006107 ORTHO05D007455 4.6e-32 142.1 90 76.7
C03p86150 Brassica napus HOM05D006107 ORTHO05D007455 4.6e-32 142.1 90 76.7
BolC3t20903H Brassica oleracea HOM05D006107 ORTHO05D007455 4.6e-32 142.1 90 76.7
AUR62041887 Chenopodium quinoa HOM05D006107 ORTHO05D007455 4.6e-32 142.1 89 74.2
Oeu007292.2 Olea europaea HOM05D006107 ORTHO05D007455 4.6e-32 142.1 80 85.0
SalBow6G1673 Salvia bowleyana HOM05D006107 ORTHO05D007455 4.6e-32 142.1 81 85.2
Zm00001eb179170 Zea mays HOM05D006107 ORTHO05D007455 4.6e-32 142.1 90 78.9
CANSAT25G2960 Cannabis sativa HOM05D006107 ORTHO05D007455 6.0e-32 141.7 90 76.7
ECA236G2832 Erigeron canadensis HOM05D006107 ORTHO05D007455 6.0e-32 141.7 126 55.6
THA.LOC104807265 Tarenaya hassleriana HOM05D006107 ORTHO05D007455 6.0e-32 141.7 90 75.6
AL7G17360 Arabidopsis lyrata HOM05D006107 ORTHO05D007455 7.8e-32 141.4 90 75.6
AT4G34030 Arabidopsis thaliana HOM05D006107 ORTHO05D007455 7.8e-32 141.4 90 75.6
DCAR_001629 Daucus carota HOM05D006107 ORTHO05D007455 7.8e-32 141.4 90 75.6
Sopen01g050230 Solanum pennellii HOM05D006107 ORTHO05D007455 1.0e-31 141.0 90 74.4
Solyc01g108030.4 Solanum lycopersicum HOM05D006107 ORTHO05D007455 1.3e-31 140.6 90 74.4
Carub.0007s0637 Capsella rubella HOM05D006107 ORTHO05D007455 1.7e-31 140.2 90 75.6
Mapoly0009s0150 Marchantia polymorpha HOM05D006107 ORTHO05D007455 1.7e-31 140.2 79 83.5
SMO174G0062 Selaginella moellendorffii HOM05D006107 ORTHO05D007455 1.7e-31 140.2 84 79.8
BcaNung03357 Brassica carinata HOM05D006107 ORTHO05D007455 2.3e-31 139.8 90 75.6
A03p62570 Brassica napus HOM05D006107 ORTHO05D007455 2.3e-31 139.8 90 75.6
C07p60130 Brassica napus HOM05D006107 ORTHO05D007455 2.3e-31 139.8 90 75.6
BolC7t46453H Brassica oleracea HOM05D006107 ORTHO05D007455 2.3e-31 139.8 90 75.6
HanXRQChr11g0331361 Helianthus annuus HOM05D006107 ORTHO05D007455 2.3e-31 139.8 126 56.3
Pp3c3_22750 Physcomitrium patens HOM05D006107 ORTHO05D007455 2.3e-31 139.8 80 82.5
Aa31LG2G16450 Aethionema arabicum HOM05D006107 ORTHO05D007455 3.0e-31 139.4 88 75.0
ClCG02G006000 Citrullus lanatus HOM05D006107 ORTHO05D007455 5.0e-31 138.7 118 65.3
HPP92_004071 Vanilla planifolia HOM05D006107 ORTHO05D007455 1.5e-30 137.1 90 71.1
HPP92_004116 Vanilla planifolia HOM05D006107 ORTHO05D007455 1.5e-30 137.1 90 71.1
Ah.00g000150 Amaranthus hybridus HOM05D006107 ORTHO05D007455 2.5e-30 136.3 107 64.5
CDE10G1185 Ceratophyllum demersum HOM05D006107 ORTHO05D007455 2.5e-30 136.3 90 72.2
Cpa.g.sc62.2 Carica papaya HOM05D006107 ORTHO05D007455 7.3e-30 134.8 70 92.9
MELO3C018456.2 Cucumis melo HOM05D006107 ORTHO05D007455 4.7e-29 132.1 75 86.7
vmacro19505 Vaccinium macrocarpon HOM05D006107 ORTHO05D007455 1.4e-28 130.6 83 77.1
Cre03.g181200 Chlamydomonas reinhardtii HOM05D006107 ORTHO05D007455 1.4e-25 120.6 79 72.2
PRCOL_00006414 Prasinoderma coloniale HOM05D006107 ORTHO05D007455 1.9e-22 110.2 82 64.6
Haze_27116 Corylus avellana HOM05D006107 ORTHO05D007455 7.3e-22 108.2 76 69.7
Haze_26655 Corylus avellana HOM05D006107 ORTHO05D007455 6.2e-21 105.1 80 62.5
Haze_26656 Corylus avellana HOM05D006107 ORTHO05D007455 6.2e-21 105.1 80 62.5
Nitab4.5_0001428g0130 Nicotiana tabacum HOM05D006107 ORTHO05D007455 1.4e-20 104.0 64 71.9
Haze_27030 Corylus avellana HOM05D006107 ORTHO05D007455 2.9e-18 96.3 96 51.0
unitig_21.g20740 Utricularia gibba HOM05D006107 ORTHO05D007455 1.7e-15 87.0 90 52.2


User provided reference genes

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