Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p034047 Quercus lobata HOM05D005827 ORTHO05D005864 1.1e-73 280.0 160 100.0
QL11p033993 Quercus lobata HOM05D005827 ORTHO05D005864 7.3e-65 250.8 152 95.4
CiPaw.06G170100 Carya illinoinensis HOM05D005827 ORTHO05D005864 1.1e-52 210.3 160 71.9
Duzib132G0170 Durio zibethinus HOM05D005827 ORTHO05D005864 3.1e-47 192.2 158 68.4
Haze_10160 Corylus avellana HOM05D005827 ORTHO05D005864 2.6e-46 189.1 145 76.6
Manes.10G074300 Manihot esculenta HOM05D005827 ORTHO05D005864 5.8e-46 188.0 158 65.2
Potri.009G097000 Populus trichocarpa HOM05D005827 ORTHO05D005864 1.1e-44 183.7 158 66.5
Dinv15756 Davidia involucrata HOM05D005827 ORTHO05D005864 3.2e-44 182.2 158 64.6
Thecc.02G106700 Theobroma cacao HOM05D005827 ORTHO05D005864 3.2e-44 182.2 134 73.1
Prupe.1G568500 Prunus persica HOM05D005827 ORTHO05D005864 5.4e-44 181.4 160 64.4
CSS0006486 Camellia sinensis var. sinensis HOM05D005827 ORTHO05D005864 1.2e-43 180.3 159 64.8
Atru.chr5.2579 Acer truncatum HOM05D005827 ORTHO05D005864 3.5e-43 178.7 161 69.6
Hma1.2p1_0796F.1_g219120 Hydrangea macrophylla HOM05D005827 ORTHO05D005864 2.3e-42 176.0 158 64.6
COL.COLO4_32605 Corchorus olitorius HOM05D005827 ORTHO05D005864 8.7e-42 174.1 164 68.3
Rhsim11G0160600 Rhododendron simsii HOM05D005827 ORTHO05D005864 8.7e-42 174.1 158 60.8
Eucgr.G01363 Eucalyptus grandis HOM05D005827 ORTHO05D005864 2.5e-41 172.6 158 64.6
MD15G1423200 Malus domestica HOM05D005827 ORTHO05D005864 2.5e-41 172.6 160 66.2
Gorai.005G235500 Gossypium raimondii HOM05D005827 ORTHO05D005864 3.3e-41 172.2 158 70.3
RcHm_v2.0_Chr7g0222441 Rosa chinensis HOM05D005827 ORTHO05D005864 3.3e-41 172.2 131 70.2
THA.LOC104823732 Tarenaya hassleriana HOM05D005827 ORTHO05D005864 1.6e-40 169.9 160 58.1
FAN08G1793 Fragaria x ananassa HOM05D005827 ORTHO05D005864 2.1e-40 169.5 166 67.5
Gohir.A03G186800 Gossypium hirsutum HOM05D005827 ORTHO05D005864 2.1e-40 169.5 158 69.0
CANSAT11G0172 Cannabis sativa HOM05D005827 ORTHO05D005864 1.1e-39 167.2 132 69.7
FAN18G4374 Fragaria x ananassa HOM05D005827 ORTHO05D005864 2.4e-39 166.0 167 65.9
vmacro14445 Vaccinium macrocarpon HOM05D005827 ORTHO05D005864 2.4e-39 166.0 158 62.7
FAN13G0291 Fragaria x ananassa HOM05D005827 ORTHO05D005864 4.0e-39 165.2 167 64.7
Sopen12g028550 Solanum pennellii HOM05D005827 ORTHO05D005864 4.0e-39 165.2 158 60.1
Nitab4.5_0000209g0220 Nicotiana tabacum HOM05D005827 ORTHO05D005864 5.3e-39 164.9 158 58.9
Solyc12g056030.2 Solanum lycopersicum HOM05D005827 ORTHO05D005864 6.9e-39 164.5 158 60.1
DCAR_029081 Daucus carota HOM05D005827 ORTHO05D005864 9.0e-39 164.1 160 62.5
Gohir.D02G207600 Gossypium hirsutum HOM05D005827 ORTHO05D005864 9.0e-39 164.1 158 69.0
Sabra09G0074600 Salix brachista HOM05D005827 ORTHO05D005864 9.0e-39 164.1 158 61.4
CAN.G517.16 Capsicum annuum HOM05D005827 ORTHO05D005864 2.0e-38 162.9 149 61.1
Peaxi162Scf00880g00322 Petunia axillaris HOM05D005827 ORTHO05D005864 4.4e-38 161.8 158 60.8
PGSC0003DMG400005012 Solanum tuberosum HOM05D005827 ORTHO05D005864 4.4e-38 161.8 158 58.9
Nitab4.5_0011210g0030 Nicotiana tabacum HOM05D000771 ORTHO05D005864 5.8e-38 161.4 158 58.2
FvH4_5g29540 Fragaria vesca HOM05D005827 ORTHO05D005864 7.6e-38 161.0 167 64.7
QL11p034007 Quercus lobata HOM05D005827 ORTHO05D005864 7.6e-38 161.0 102 91.2
Cpa.g.sc246.10 Carica papaya HOM05D005827 ORTHO05D005864 9.9e-38 160.6 158 59.5
GSVIVG01003168001 Vitis vinifera HOM05D005827 ORTHO05D005864 1.3e-37 160.2 149 69.1
FAN04G0262 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.7e-37 159.8 135 65.2
Sabra09G0074500 Salix brachista HOM05D005827 ORTHO05D005864 1.7e-37 159.8 182 53.8
TAR625G0497 Trochodendron aralioides HOM05D005827 ORTHO05D005864 1.7e-37 159.8 118 70.3
TAR625G1254 Trochodendron aralioides HOM05D005827 ORTHO05D005864 1.7e-37 159.8 118 70.3
Cc02_g19170 Coffea canephora HOM05D005827 ORTHO05D005864 2.2e-37 159.5 159 62.9
A02p32240 Brassica napus HOM05D005827 ORTHO05D005864 3.8e-37 158.7 134 61.9
BolC2t11063H Brassica oleracea HOM05D005827 ORTHO05D005864 3.8e-37 158.7 134 61.9
BraA02t08240Z Brassica rapa HOM05D005827 ORTHO05D005864 3.8e-37 158.7 134 61.9
BcaC03g17064 Brassica carinata HOM05D005827 ORTHO05D005864 4.9e-37 158.3 134 61.9
Sp2g13090 Schrenkiella parvula HOM05D005827 ORTHO05D005864 6.4e-37 157.9 151 55.6
MD08G1229200 Malus domestica HOM05D005827 ORTHO05D005864 1.1e-36 157.1 133 66.2
BcaB07g30381 Brassica carinata HOM05D005827 ORTHO05D005864 1.4e-36 156.8 134 61.2
C02p49840 Brassica napus HOM05D005827 ORTHO05D005864 1.9e-36 156.4 134 61.2
Carub.0005s0059 Capsella rubella HOM05D005827 ORTHO05D005864 9.3e-36 154.1 151 55.0
Nn1g04717 Nelumbo nucifera HOM05D005827 ORTHO05D005864 9.3e-36 154.1 156 62.2
Nitab4.5_0001647g0080 Nicotiana tabacum HOM05D005827 ORTHO05D005864 3.5e-35 152.1 134 61.9
AT2G01640 Arabidopsis thaliana HOM05D005827 ORTHO05D005864 3.0e-34 149.1 131 59.5
AL5G10740 Arabidopsis lyrata HOM05D005827 ORTHO05D005864 5.1e-34 148.3 126 61.1
Lj9A321T79 Lonicera japonica HOM05D005827 ORTHO05D005864 6.6e-34 147.9 197 49.2
PGR042G1992 Punica granatum HOM05D005827 ORTHO05D005864 6.6e-34 147.9 133 60.2
EL10Ac9g22299 Beta vulgaris HOM05D005827 ORTHO05D005864 1.9e-33 146.4 161 54.0
HanXRQChr16g0514881 Helianthus annuus HOM05D005827 ORTHO05D005864 2.8e-32 142.5 158 54.4
Sed0003004 Sechium edule HOM05D005827 ORTHO05D005864 2.8e-32 142.5 160 54.4
Thhalv10005665m.g Eutrema salsugineum HOM05D005827 ORTHO05D005864 3.6e-32 142.1 171 48.5
PSO170G4182 Papaver somniferum HOM05D005827 ORTHO05D005864 3.6e-32 142.1 156 53.2
Eucgr.H03226 Eucalyptus grandis HOM05D005827 ORTHO05D005864 6.2e-32 141.4 111 69.4
ECA234G2840 Erigeron canadensis HOM05D005827 ORTHO05D005864 8.1e-32 141.0 134 59.7
ClCG04G002790 Citrullus lanatus HOM05D005827 ORTHO05D005864 2.4e-31 139.4 153 53.6
Ca_30413_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 4.0e-31 138.7 152 53.9
Ciclev10030223m.g Citrus clementina HOM05D005827 ORTHO05D005864 5.3e-31 138.3 115 68.7
Lsat_1_v5_gn_5_114720 Lactuca sativa HOM05D005827 ORTHO05D005864 5.3e-31 138.3 134 58.2
TWI31G0230 Tripterygium wilfordii HOM05D005827 ORTHO05D005864 5.3e-31 138.3 125 64.8
Aqoxy5G03364 Aquilegia oxysepala HOM05D005827 ORTHO05D005864 2.0e-30 136.3 148 55.4
CsaV3_4G029930 Cucumis sativus L. HOM05D005827 ORTHO05D005864 3.4e-30 135.6 160 55.6
AUR62010278 Chenopodium quinoa HOM05D005827 ORTHO05D005864 5.8e-30 134.8 172 48.8
PSO210G1068 Papaver somniferum HOM05D005827 ORTHO05D005864 7.6e-30 134.4 156 52.6
Sc08g0001470 Simmondsia chinensis HOM05D005827 ORTHO05D005864 9.9e-30 134.0 132 56.1
MSTRG.27741 Avicennia marina HOM05D005827 ORTHO05D005864 1.3e-29 133.7 158 50.6
Lalb_Chr21g0308391 Lupinus albus HOM05D005827 ORTHO05D005864 2.2e-29 132.9 162 50.0
Migut.N01172 Erythranthe guttata HOM05D005827 ORTHO05D005864 8.4e-29 131.0 158 55.7
Aa31LG2G8260 Aethionema arabicum HOM05D005827 ORTHO05D005864 1.1e-28 130.6 121 55.4
TAR381G1673 Trochodendron aralioides HOM05D005827 ORTHO05D005864 1.9e-28 129.8 133 63.9
Hund00127 Selenicereus undatus HOM05D005827 ORTHO05D005864 4.6e-27 125.2 101 67.3
Ca_06388_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 6.0e-27 124.8 137 54.0
Glyma.12G113700 Glycine max HOM05D005827 ORTHO05D005864 2.3e-26 122.9 163 49.7
SalBow3G3341 Salvia bowleyana HOM05D005827 ORTHO05D005864 6.7e-26 121.3 166 47.6
SGA_v2.0_scaffold42G16001 Striga asiatica HOM05D005827 ORTHO05D005864 8.7e-26 120.9 160 48.1
arahy.Tifrunner.gnm1.ann1.M92LVR Arachis hypogaea HOM05D005827 ORTHO05D005864 1.1e-25 120.6 144 50.0
CDE01G0172 Ceratophyllum demersum HOM05D005827 ORTHO05D005864 1.1e-25 120.6 144 50.0
HPP92_026144 Vanilla planifolia HOM05D005827 ORTHO05D005864 1.5e-25 120.2 131 49.6
Hund00128 Selenicereus undatus HOM05D005827 ORTHO05D005864 1.9e-25 119.8 101 65.3
arahy.Tifrunner.gnm1.ann1.HL4A43 Arachis hypogaea HOM05D005827 ORTHO05D005864 2.5e-25 119.4 126 52.4
Os12g0244500 Oryza sativa ssp. japonica HOM05D005827 ORTHO05D005864 4.3e-25 118.6 114 58.8
Actinidia00415 Actinidia chinensis HOM05D005827 ORTHO05D005864 5.6e-25 118.2 102 66.7
Phvul.007G038800 Phaseolus vulgaris HOM05D005827 ORTHO05D005864 2.1e-24 116.3 160 48.1
MELO3C003274.2 Cucumis melo HOM05D005827 ORTHO05D005864 2.8e-24 115.9 133 51.9
Zm00001eb133530 Zea mays HOM05D005827 ORTHO05D005864 8.1e-24 114.4 147 48.3
Glyma.20G127400 Glycine max HOM05D005827 ORTHO05D005864 1.5e-22 110.2 163 50.3
SGA_v2.0_scaffold393G50707 Striga asiatica HOM05D005827 ORTHO05D005864 3.4e-22 109.0 147 46.9
ATR0827G109 Amborella trichopoda HOM05D005827 ORTHO05D005864 5.8e-22 108.2 105 53.3
Psat6g219720 Pisum sativum HOM05D005827 ORTHO05D005864 2.1e-19 99.8 158 43.0
Aa31sc215G30 Aethionema arabicum HOM05D005827 ORTHO05D005864 6.0e-19 98.2 156 37.8
Lj5g0000760 Lotus japonicus HOM05D005827 ORTHO05D005864 1.0e-18 97.4 108 51.9
CiPaw.07G088900 Carya illinoinensis HOM05D005827 ORTHO05D005864 1.8e-18 96.7 86 68.6
MELO3C033554.2 Cucumis melo HOM05D005827 ORTHO05D005864 3.0e-18 95.9 102 53.9
Lj3g0023632 Lotus japonicus HOM05D005827 ORTHO05D005864 8.7e-18 94.4 108 50.0
MD05G1087800 Malus domestica HOM05D005827 ORTHO05D005864 1.1e-17 94.0 116 49.1
Nn2g12688 Nelumbo nucifera HOM05D005827 ORTHO05D005864 1.5e-17 93.6 83 60.2
unitig_94.g28296 Utricularia gibba HOM05D005827 ORTHO05D005864 3.7e-16 89.0 136 41.2
unitig_94.g28309 Utricularia gibba HOM05D005827 ORTHO05D005864 3.7e-16 89.0 136 41.2
AUR62039111 Chenopodium quinoa HOM05D005827 ORTHO05D005864 4.8e-16 88.6 88 52.3
ATR0691G195 Amborella trichopoda HOM05D005827 ORTHO05D005864 3.1e-15 85.9 78 53.8
AUR62044681 Chenopodium quinoa HOM05D005827 ORTHO05D005864 3.1e-15 85.9 78 55.1
TPR.G13876 Trifolium pratense HOM05D005827 ORTHO05D005864 1.5e-14 83.6 111 45.9
Medtr1g107495 Medicago truncatula HOM05D005827 ORTHO05D005864 2.0e-14 83.2 87 51.7
CANSAT25G3357 Cannabis sativa HOM05D005827 ORTHO05D005864 5.8e-14 81.6 54 72.2
SMO364G0308 Selaginella moellendorffii HOM05D005827 ORTHO05D000003 1.3e-13 80.5 118 41.5
Zm00001eb207600 Zea mays HOM05D005827 ORTHO05D005864 2.9e-13 79.3 85 56.5
Zm00001eb350190 Zea mays HOM05D005827 ORTHO05D005864 3.8e-13 79.0 84 56.0
Zm00001eb324360 Zea mays HOM05D005827 ORTHO05D005864 1.1e-12 77.4 95 50.5
Zm00001eb006370 Zea mays HOM05D005827 ORTHO05D005864 1.9e-12 76.6 85 54.1
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 3.2e-12 75.9 126 38.9
SEGI_38856 Sequoiadendron giganteum HOM05D005827 ORTHO05D005864 5.5e-12 75.1 140 35.7
Zm00001eb259520 Zea mays HOM05D005827 ORTHO05D005864 1.2e-11 73.9 85 54.1
Zm00001eb324920 Zea mays HOM05D005827 ORTHO05D005864 4.6e-11 72.0 84 54.8
Mapoly0052s0016 Marchantia polymorpha HOM05D005827 ORTHO05D005864 1.0e-10 70.9 118 41.5
Zm00001eb091410 Zea mays HOM05D005827 ORTHO05D005864 3.0e-10 69.3 93 48.4
Pp3c21_2370 Physcomitrium patens HOM05D005827 ORTHO05D005864 6.7e-10 68.2 110 39.1
Ah.01g018070 Amaranthus hybridus HOM05D007150 ORTHO05D008994 3.7e-08 62.4 67 65.7
AagrBONN_evm.TU.Sc2ySwM_228.4380 Anthoceros agrestis HOM05D005827 ORTHO05D005864 1.1e-07 60.8 97 40.2


User provided reference genes

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