Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 3.0e-241 838.2 444 100.0
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 1.5e-229 799.3 444 94.6
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 3.0e-225 785.0 431 96.1
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 5.8e-221 770.8 437 91.8
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 7.6e-221 770.4 442 91.9
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 5.1e-217 757.7 437 89.2
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 5.1e-217 757.7 437 89.2
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 1.5e-216 756.1 437 90.2
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 1.3e-215 753.1 437 89.5
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 1.6e-215 752.7 437 89.2
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 2.8e-215 751.9 437 89.2
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 3.6e-215 751.5 434 89.6
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 8.1e-215 750.4 437 88.3
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 1.8e-214 749.2 437 89.5
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 1.8e-214 749.2 437 88.1
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 3.1e-214 748.4 437 89.5
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 4.0e-214 748.0 437 87.6
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 6.9e-214 747.3 437 87.9
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 9.0e-214 746.9 437 88.3
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 1.2e-213 746.5 437 89.2
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 2.0e-213 745.7 437 87.9
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 3.4e-213 745.0 437 89.0
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 4.5e-213 744.6 437 88.3
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 4.5e-213 744.6 437 87.6
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 5.8e-213 744.2 437 87.9
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 7.6e-213 743.8 437 87.9
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 7.6e-213 743.8 437 88.1
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 9.9e-213 743.4 437 87.0
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 9.9e-213 743.4 437 86.3
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 1.3e-212 743.0 437 87.4
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.7e-212 742.7 437 87.2
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 2.2e-212 742.3 437 87.2
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 2.2e-212 742.3 437 87.2
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 2.9e-212 741.9 437 86.7
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 1.4e-211 739.6 438 87.4
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 1.9e-211 739.2 437 87.2
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 1.9e-211 739.2 437 87.4
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 1.9e-211 739.2 437 88.1
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 2.4e-211 738.8 455 84.4
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 2.4e-211 738.8 437 85.8
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 2.4e-211 738.8 438 87.2
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 3.2e-211 738.4 437 86.3
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 4.2e-211 738.0 437 87.4
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 4.2e-211 738.0 437 87.0
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 4.2e-211 738.0 437 86.5
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 5.4e-211 737.6 437 86.5
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 5.4e-211 737.6 437 85.6
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 7.1e-211 737.3 437 86.7
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 7.1e-211 737.3 436 86.5
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 9.3e-211 736.9 436 86.5
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 9.3e-211 736.9 437 86.3
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 1.6e-210 736.1 463 84.4
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 2.7e-210 735.3 436 86.2
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 3.5e-210 734.9 437 86.5
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 3.5e-210 734.9 434 86.4
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 1.3e-209 733.0 455 84.8
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 1.8e-209 732.6 437 85.8
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 2.3e-209 732.3 437 86.3
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 5.1e-209 731.1 438 86.1
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 5.1e-209 731.1 437 85.4
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 1.1e-208 729.9 437 85.6
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 1.1e-208 729.9 438 86.1
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 1.5e-208 729.6 437 85.6
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 2.5e-208 728.8 436 85.1
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 2.5e-208 728.8 477 81.6
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 3.3e-208 728.4 437 85.4
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 3.3e-208 728.4 437 85.4
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 4.3e-208 728.0 437 85.4
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 5.6e-208 727.6 437 85.1
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 5.6e-208 727.6 437 86.3
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 7.4e-208 727.2 437 85.1
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 7.4e-208 727.2 437 84.9
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 9.6e-208 726.9 437 85.4
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 1.3e-207 726.5 437 85.1
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 2.1e-207 725.7 437 85.1
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 3.7e-207 724.9 437 84.9
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 3.7e-207 724.9 416 90.4
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 4.8e-207 724.5 437 85.6
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 1.8e-206 722.6 437 84.9
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 4.0e-206 721.5 437 85.1
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 5.3e-206 721.1 437 84.7
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 5.3e-206 721.1 437 84.4
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 5.3e-206 721.1 437 84.4
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 9.0e-206 720.3 460 82.2
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 2.0e-205 719.2 438 85.6
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 3.4e-205 718.4 437 84.4
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 4.5e-205 718.0 435 84.8
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 5.8e-205 717.6 437 84.0
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 7.6e-205 717.2 437 85.4
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 1.7e-204 716.1 437 84.0
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 3.8e-204 714.9 425 87.5
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 4.9e-204 714.5 400 93.0
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 1.4e-203 713.0 448 83.5
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 1.9e-203 712.6 437 84.4
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 3.2e-203 711.8 435 84.1
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 2.1e-202 709.1 437 85.6
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 7.9e-202 707.2 435 84.1
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 7.9e-202 707.2 436 83.5
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 1.8e-201 706.1 398 92.0
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 3.0e-201 705.3 420 85.7
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 3.3e-200 701.8 438 82.4
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 2.6e-197 692.2 436 83.9
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 1.0e-196 690.3 399 88.7
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 2.5e-195 685.6 435 80.7
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.0e-193 680.2 436 79.8
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 1.3e-191 673.3 423 83.0
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.0e-188 663.7 395 86.6
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 3.6e-186 655.2 399 82.7
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 7.9e-186 654.1 436 78.2
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 5.1e-185 651.4 396 84.3
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 2.0e-184 649.4 437 75.7
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 7.7e-181 637.5 403 80.9
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 5.0e-180 634.8 433 74.4
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 1.9e-179 632.9 434 75.1
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 1.9e-179 632.9 419 78.0
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 5.5e-179 631.3 389 83.5
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 5.1e-177 624.8 427 75.2
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 4.4e-176 621.7 416 75.5
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 3.7e-175 618.6 432 73.1
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 2.6e-173 612.5 434 76.3
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 7.7e-173 610.9 421 74.1
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 3.8e-172 608.6 596 59.1
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 6.7e-169 597.8 424 71.7
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 1.6e-157 560.1 347 82.7
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 6.3e-151 538.1 443 68.6
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 5.0e-148 528.5 315 85.1
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 3.6e-146 522.3 308 88.0
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 1.7e-140 503.4 409 69.4
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 3.7e-135 485.7 299 83.6
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 2.3e-132 476.5 354 69.2
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 8.6e-132 474.6 437 61.3
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 6.4e-127 458.4 437 61.6
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 3.5e-125 452.6 269 85.5
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 4.0e-121 439.1 258 86.4
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 3.7e-119 432.6 282 79.8
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 3.9e-116 422.5 466 50.2
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 1.4e-110 404.1 243 85.6
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 2.2e-103 380.2 299 70.6
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 1.4e-94 350.9 198 92.9
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 4.5e-80 302.8 298 60.4
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 1.2e-77 294.7 186 80.1
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.3e-66 258.1 173 74.0
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 5.9e-64 249.2 195 65.6
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 2.0e-56 224.2 129 86.8
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 5.0e-55 219.5 144 78.5
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 8.8e-52 208.8 193 57.5
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 2.5e-46 190.7 126 77.0
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 7.7e-40 169.1 105 84.8
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 1.6e-37 161.4 102 84.3
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 7.5e-35 152.5 103 74.8
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 2.0e-32 144.4 113 74.3
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 2.9e-31 140.6 93 71.0
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 1.2e-27 128.6 101 71.3
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 4.9e-26 123.2 69 91.3
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 2.4e-25 120.9 78 80.8
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 1.2e-24 118.6 90 63.3
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 1.8e-20 104.8 69 81.2
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 3.5e-16 90.5 66 75.8
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 6.2e-13 79.7 141 37.6
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 3.4e-11 73.9 58 67.2
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 8.3e-10 69.3 43 76.7
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 1.1e-09 68.9 38 84.2
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 1.4e-09 68.6 93 48.4
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.1e-08 64.7 43 72.1
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 1.0e-07 62.4 39 82.1


User provided reference genes

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