Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p034007 Quercus lobata HOM05D005827 ORTHO05D005864 2.3e-43 178.7 103 100.0
QL11p034047 Quercus lobata HOM05D005827 ORTHO05D005864 2.2e-38 162.2 102 91.2
QL11p033993 Quercus lobata HOM05D005827 ORTHO05D005864 4.9e-38 161.0 102 92.2
CiPaw.06G170100 Carya illinoinensis HOM05D005827 ORTHO05D005864 1.1e-24 116.7 102 60.8
Duzib132G0170 Durio zibethinus HOM05D005827 ORTHO05D005864 1.4e-24 116.3 100 62.0
COL.COLO4_32605 Corchorus olitorius HOM05D005827 ORTHO05D005864 3.1e-24 115.2 98 73.5
MD08G1229200 Malus domestica HOM05D005827 ORTHO05D005864 7.6e-23 110.5 102 58.8
Ciclev10030223m.g Citrus clementina HOM05D005827 ORTHO05D005864 1.3e-22 109.8 100 61.0
Haze_10160 Corylus avellana HOM05D005827 ORTHO05D005864 1.3e-22 109.8 97 67.0
Atru.chr5.2579 Acer truncatum HOM05D005827 ORTHO05D005864 2.2e-22 109.0 103 66.0
Manes.10G074300 Manihot esculenta HOM05D005827 ORTHO05D005864 8.4e-22 107.1 100 54.0
Thecc.02G106700 Theobroma cacao HOM05D005827 ORTHO05D005864 1.4e-21 106.3 75 69.3
Prupe.1G568500 Prunus persica HOM05D005827 ORTHO05D005864 3.2e-21 105.1 102 54.9
Rhsim11G0160600 Rhododendron simsii HOM05D005827 ORTHO05D005864 3.2e-21 105.1 100 56.0
Potri.009G097000 Populus trichocarpa HOM05D005827 ORTHO05D005864 4.2e-21 104.8 100 56.0
Dinv15756 Davidia involucrata HOM05D005827 ORTHO05D005864 3.5e-20 101.7 100 55.0
vmacro14445 Vaccinium macrocarpon HOM05D005827 ORTHO05D005864 6.0e-20 100.9 100 60.0
Gohir.D02G207600 Gossypium hirsutum HOM05D005827 ORTHO05D005864 7.8e-20 100.5 100 67.0
Gorai.005G235500 Gossypium raimondii HOM05D005827 ORTHO05D005864 7.8e-20 100.5 100 67.0
THA.LOC104823732 Tarenaya hassleriana HOM05D005827 ORTHO05D005864 7.8e-20 100.5 102 50.0
Hma1.2p1_0796F.1_g219120 Hydrangea macrophylla HOM05D005827 ORTHO05D005864 1.3e-19 99.8 100 57.0
MD15G1423200 Malus domestica HOM05D005827 ORTHO05D005864 2.3e-19 99.0 102 59.8
RcHm_v2.0_Chr7g0222441 Rosa chinensis HOM05D005827 ORTHO05D005864 3.0e-19 98.6 73 65.8
Gohir.A03G186800 Gossypium hirsutum HOM05D005827 ORTHO05D005864 5.1e-19 97.8 100 66.0
Peaxi162Scf00880g00322 Petunia axillaris HOM05D005827 ORTHO05D005864 6.6e-19 97.4 100 59.0
CAN.G517.16 Capsicum annuum HOM05D005827 ORTHO05D005864 8.7e-19 97.1 102 53.9
Cc02_g19170 Coffea canephora HOM05D005827 ORTHO05D005864 8.7e-19 97.1 96 59.4
Nitab4.5_0000209g0220 Nicotiana tabacum HOM05D005827 ORTHO05D005864 1.1e-18 96.7 100 53.0
CSS0006486 Camellia sinensis var. sinensis HOM05D005827 ORTHO05D005864 1.9e-18 95.9 97 55.7
Sopen12g028550 Solanum pennellii HOM05D005827 ORTHO05D005864 2.5e-18 95.5 100 54.0
Solyc12g056030.2 Solanum lycopersicum HOM05D005827 ORTHO05D005864 3.3e-18 95.1 100 54.0
PGSC0003DMG400005012 Solanum tuberosum HOM05D005827 ORTHO05D005864 3.3e-18 95.1 100 54.0
TAR625G0497 Trochodendron aralioides HOM05D005827 ORTHO05D005864 3.3e-18 95.1 75 62.7
TAR625G1254 Trochodendron aralioides HOM05D005827 ORTHO05D005864 3.3e-18 95.1 75 62.7
CANSAT11G0172 Cannabis sativa HOM05D005827 ORTHO05D005864 4.3e-18 94.7 74 64.9
GSVIVG01003168001 Vitis vinifera HOM05D005827 ORTHO05D005864 4.3e-18 94.7 102 63.7
Cpa.g.sc246.10 Carica papaya HOM05D005827 ORTHO05D005864 9.6e-18 93.6 100 53.0
FAN08G1793 Fragaria x ananassa HOM05D005827 ORTHO05D005864 9.6e-18 93.6 108 63.0
Eucgr.G01363 Eucalyptus grandis HOM05D005827 ORTHO05D005864 1.6e-17 92.8 100 54.0
FAN18G4374 Fragaria x ananassa HOM05D005827 ORTHO05D005864 2.8e-17 92.0 109 61.5
Lj9A321T79 Lonicera japonica HOM05D005827 ORTHO05D005864 2.8e-17 92.0 100 49.0
EL10Ac9g22299 Beta vulgaris HOM05D005827 ORTHO05D005864 3.6e-17 91.7 97 53.6
FAN13G0291 Fragaria x ananassa HOM05D005827 ORTHO05D005864 3.6e-17 91.7 73 61.6
Nn1g04717 Nelumbo nucifera HOM05D005827 ORTHO05D005864 4.8e-17 91.3 74 62.2
Nitab4.5_0011210g0030 Nicotiana tabacum HOM05D000771 ORTHO05D005864 4.8e-17 91.3 100 51.0
FvH4_5g29540 Fragaria vesca HOM05D005827 ORTHO05D005864 6.2e-17 90.9 73 61.6
Eucgr.H03226 Eucalyptus grandis HOM05D005827 ORTHO05D005864 1.4e-16 89.7 75 62.7
Sed0003004 Sechium edule HOM05D005827 ORTHO05D005864 1.8e-16 89.4 102 48.0
Nitab4.5_0001647g0080 Nicotiana tabacum HOM05D005827 ORTHO05D005864 3.1e-16 88.6 75 58.7
TWI31G0230 Tripterygium wilfordii HOM05D005827 ORTHO05D005864 3.1e-16 88.6 74 63.5
Sabra09G0074600 Salix brachista HOM05D005827 ORTHO05D005864 4.0e-16 88.2 100 50.0
SGA_v2.0_scaffold42G16001 Striga asiatica HOM05D005827 ORTHO05D005864 4.0e-16 88.2 100 47.0
DCAR_029081 Daucus carota HOM05D005827 ORTHO05D005864 6.9e-16 87.4 102 55.9
FAN04G0262 Fragaria x ananassa HOM05D005827 ORTHO05D005864 6.9e-16 87.4 73 60.3
MSTRG.27741 Avicennia marina HOM05D005827 ORTHO05D005864 1.2e-15 86.7 75 54.7
Sabra09G0074500 Salix brachista HOM05D005827 ORTHO05D005864 1.2e-15 86.7 135 40.7
Hund00127 Selenicereus undatus HOM05D005827 ORTHO05D005864 1.2e-15 86.7 67 64.2
CiPaw.07G088900 Carya illinoinensis HOM05D005827 ORTHO05D005864 4.4e-15 84.7 73 68.5
ECA234G2840 Erigeron canadensis HOM05D005827 ORTHO05D005864 5.8e-15 84.3 74 56.8
SGA_v2.0_scaffold393G50707 Striga asiatica HOM05D005827 ORTHO05D005864 5.8e-15 84.3 100 47.0
Migut.N01172 Erythranthe guttata HOM05D005827 ORTHO05D005864 7.6e-15 84.0 100 55.0
Hund00128 Selenicereus undatus HOM05D005827 ORTHO05D005864 1.7e-14 82.8 67 62.7
TAR381G1673 Trochodendron aralioides HOM05D005827 ORTHO05D005864 1.7e-14 82.8 75 61.3
ClCG04G002790 Citrullus lanatus HOM05D005827 ORTHO05D005864 2.2e-14 82.4 102 48.0
MELO3C003274.2 Cucumis melo HOM05D005827 ORTHO05D005864 6.4e-14 80.9 102 48.0
Lsat_1_v5_gn_5_114720 Lactuca sativa HOM05D005827 ORTHO05D005864 6.4e-14 80.9 74 55.4
Lalb_Chr21g0308391 Lupinus albus HOM05D005827 ORTHO05D005864 6.4e-14 80.9 102 44.1
A02p32240 Brassica napus HOM05D005827 ORTHO05D005864 8.4e-14 80.5 75 48.0
BolC2t11063H Brassica oleracea HOM05D005827 ORTHO05D005864 8.4e-14 80.5 75 48.0
BraA02t08240Z Brassica rapa HOM05D005827 ORTHO05D005864 8.4e-14 80.5 75 48.0
BcaC03g17064 Brassica carinata HOM05D005827 ORTHO05D005864 1.1e-13 80.1 75 48.0
C02p49840 Brassica napus HOM05D005827 ORTHO05D005864 1.1e-13 80.1 75 48.0
BcaB07g30381 Brassica carinata HOM05D005827 ORTHO05D005864 1.4e-13 79.7 75 48.0
Lj5g0000760 Lotus japonicus HOM05D005827 ORTHO05D005864 1.4e-13 79.7 95 50.5
Sc08g0001470 Simmondsia chinensis HOM05D005827 ORTHO05D005864 1.4e-13 79.7 73 54.8
Ca_30413_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 1.9e-13 79.3 97 45.4
Carub.0005s0059 Capsella rubella HOM05D005827 ORTHO05D005864 2.4e-13 79.0 93 41.9
CANSAT25G3357 Cannabis sativa HOM05D005827 ORTHO05D005864 5.4e-13 77.8 53 69.8
HanXRQChr16g0514881 Helianthus annuus HOM05D005827 ORTHO05D005864 5.4e-13 77.8 100 45.0
Sp2g13090 Schrenkiella parvula HOM05D005827 ORTHO05D005864 5.4e-13 77.8 89 42.7
Lj3g0023632 Lotus japonicus HOM05D005827 ORTHO05D005864 7.1e-13 77.4 95 48.4
CsaV3_4G029930 Cucumis sativus L. HOM05D005827 ORTHO05D005864 9.3e-13 77.0 75 54.7
PSO170G4182 Papaver somniferum HOM05D005827 ORTHO05D005864 2.1e-12 75.9 96 45.8
MELO3C033554.2 Cucumis melo HOM05D005827 ORTHO05D005864 3.5e-12 75.1 75 53.3
SalBow3G3341 Salvia bowleyana HOM05D005827 ORTHO05D005864 6.0e-12 74.3 95 43.2
AUR62010278 Chenopodium quinoa HOM05D005827 ORTHO05D005864 7.8e-12 73.9 74 47.3
PGR042G1992 Punica granatum HOM05D005827 ORTHO05D005864 7.8e-12 73.9 75 50.7
PSO210G1068 Papaver somniferum HOM05D005827 ORTHO05D005864 1.0e-11 73.6 96 45.8
Aa31sc215G30 Aethionema arabicum HOM05D005827 ORTHO05D005864 1.7e-11 72.8 93 39.8
Ca_06388_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 1.7e-11 72.8 70 52.9
MD05G1087800 Malus domestica HOM05D005827 ORTHO05D005864 1.7e-11 72.8 100 46.0
AT2G01640 Arabidopsis thaliana HOM05D005827 ORTHO05D005864 3.0e-11 72.0 69 49.3
Glyma.12G113700 Glycine max HOM05D005827 ORTHO05D005864 5.1e-11 71.2 95 43.2
AL5G10740 Arabidopsis lyrata HOM05D005827 ORTHO05D005864 6.6e-11 70.9 63 52.4
Aqoxy5G03364 Aquilegia oxysepala HOM05D005827 ORTHO05D005864 1.5e-10 69.7 96 44.8
ATR0827G109 Amborella trichopoda HOM05D005827 ORTHO05D005864 5.6e-10 67.8 70 44.3
ATR0691G195 Amborella trichopoda HOM05D005827 ORTHO05D005864 1.6e-09 66.2 58 53.4
Zm00001eb133530 Zea mays HOM05D005827 ORTHO05D005864 1.6e-09 66.2 100 41.0
arahy.Tifrunner.gnm1.ann1.M92LVR Arachis hypogaea HOM05D005827 ORTHO05D005864 2.1e-09 65.9 97 42.3
Glyma.20G127400 Glycine max HOM05D005827 ORTHO05D005864 2.1e-09 65.9 95 46.3
arahy.Tifrunner.gnm1.ann1.HL4A43 Arachis hypogaea HOM05D005827 ORTHO05D005864 2.8e-09 65.5 78 44.9
AUR62044681 Chenopodium quinoa HOM05D005827 ORTHO05D005864 2.8e-09 65.5 62 50.0
HPP92_026144 Vanilla planifolia HOM05D005827 ORTHO05D005864 2.8e-09 65.5 71 46.5
AUR62039111 Chenopodium quinoa HOM05D005827 ORTHO05D005864 3.6e-09 65.1 60 51.7
Thhalv10005665m.g Eutrema salsugineum HOM05D005827 ORTHO05D005864 3.6e-09 65.1 121 33.1
Psat6g219720 Pisum sativum HOM05D005827 ORTHO05D005864 4.8e-09 64.7 96 39.6
TPR.G13876 Trifolium pratense HOM05D005827 ORTHO05D005864 4.8e-09 64.7 102 38.2
Medtr1g107495 Medicago truncatula HOM05D005827 ORTHO05D005864 1.1e-08 63.5 61 49.2
Os12g0244500 Oryza sativa ssp. japonica HOM05D005827 ORTHO05D005864 1.8e-08 62.8 67 50.7
Aa31LG2G8260 Aethionema arabicum HOM05D005827 ORTHO05D005864 4.0e-08 61.6 71 40.8
Ah.01g018070 Amaranthus hybridus HOM05D007150 ORTHO05D008994 1.2e-07 60.1 39 69.2
CDE01G0172 Ceratophyllum demersum HOM05D005827 ORTHO05D005864 2.6e-07 58.9 67 46.3
Phvul.007G038800 Phaseolus vulgaris HOM05D005827 ORTHO05D005864 2.6e-07 58.9 94 38.3
Zm00001eb207600 Zea mays HOM05D005827 ORTHO05D005864 3.4e-07 58.5 67 47.8
SMO364G0308 Selaginella moellendorffii HOM05D005827 ORTHO05D000003 4.5e-07 58.2 73 43.8
Zm00001eb324360 Zea mays HOM05D005827 ORTHO05D005864 4.5e-07 58.2 67 47.8
Zm00001eb350190 Zea mays HOM05D005827 ORTHO05D005864 5.8e-07 57.8 67 47.8
SEGI_38856 Sequoiadendron giganteum HOM05D005827 ORTHO05D005864 7.6e-07 57.4 62 46.8
Zm00001eb006370 Zea mays HOM05D005827 ORTHO05D005864 7.6e-07 57.4 67 47.8
Zm00001eb259520 Zea mays HOM05D005827 ORTHO05D005864 3.8e-06 55.1 67 46.3
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 6.4e-06 54.3 68 45.6


User provided reference genes

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