Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 1.0e-241 839.7 444 100.0
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 4.4e-229 797.7 444 94.6
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 4.4e-221 771.2 431 94.7
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 6.0e-218 760.8 437 90.4
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 1.0e-217 760.0 442 90.5
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 9.0e-214 746.9 437 88.1
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 9.0e-214 746.9 437 88.1
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 7.6e-213 743.8 437 88.8
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 1.7e-212 742.7 437 88.3
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 2.9e-212 741.9 437 88.1
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 4.9e-212 741.1 434 88.5
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 4.9e-212 741.1 437 87.9
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 2.4e-211 738.8 437 86.7
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 5.4e-211 737.6 437 86.5
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 9.3e-211 736.9 437 87.4
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 9.3e-211 736.9 437 87.6
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 9.3e-211 736.9 437 87.4
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 1.2e-210 736.5 437 86.0
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 2.7e-210 735.3 437 86.7
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 3.5e-210 734.9 437 87.0
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 6.0e-210 734.2 437 87.2
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 6.0e-210 734.2 437 86.3
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 6.0e-210 734.2 437 86.5
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 7.9e-210 733.8 437 85.1
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 7.9e-210 733.8 437 86.7
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 1.0e-209 733.4 437 85.6
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.0e-209 733.4 437 86.3
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 1.0e-209 733.4 437 87.4
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 1.3e-209 733.0 437 86.7
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 3.0e-209 731.9 437 86.0
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 3.9e-209 731.5 437 85.8
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 5.1e-209 731.1 437 85.4
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 1.1e-208 729.9 437 85.1
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 1.9e-208 729.2 437 85.8
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 1.9e-208 729.2 455 83.3
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 1.9e-208 729.2 438 86.1
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 2.5e-208 728.8 437 86.7
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 3.3e-208 728.4 437 86.3
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 3.3e-208 728.4 437 85.6
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 3.3e-208 728.4 438 85.6
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 3.3e-208 728.4 463 83.2
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 3.3e-208 728.4 437 85.4
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 3.3e-208 728.4 437 84.7
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 4.3e-208 728.0 437 85.6
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 5.6e-208 727.6 437 85.8
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 7.4e-208 727.2 437 84.4
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 9.6e-208 726.9 437 84.9
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 1.3e-207 726.5 437 85.1
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 1.6e-207 726.1 437 84.9
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 2.1e-207 725.7 436 84.9
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 2.8e-207 725.3 436 84.9
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 2.8e-207 725.3 437 85.4
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 1.1e-206 723.4 437 85.1
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 1.1e-206 723.4 437 84.9
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 1.1e-206 723.4 434 84.8
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 1.8e-206 722.6 477 80.5
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 4.0e-206 721.5 438 84.5
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 4.0e-206 721.5 455 83.3
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 5.3e-206 721.1 436 84.4
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 5.3e-206 721.1 437 84.2
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 5.3e-206 721.1 437 84.0
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 5.3e-206 721.1 437 84.9
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 9.0e-206 720.3 437 84.0
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 2.0e-205 719.2 437 84.4
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 2.6e-205 718.8 438 84.2
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 3.4e-205 718.4 437 84.0
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 3.4e-205 718.4 437 84.0
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 3.4e-205 718.4 437 84.7
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 5.8e-205 717.6 437 83.8
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 7.6e-205 717.2 437 83.8
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 7.6e-205 717.2 437 83.5
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 9.9e-205 716.8 437 84.4
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 2.2e-204 715.7 437 83.8
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 4.9e-204 714.5 436 83.3
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 1.1e-203 713.4 416 88.7
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 1.4e-203 713.0 437 84.0
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 1.9e-203 712.6 437 83.3
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 7.1e-203 710.7 437 82.8
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 7.1e-203 710.7 437 84.0
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 1.2e-202 709.9 437 83.1
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 1.6e-202 709.5 437 83.1
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 1.6e-202 709.5 460 80.7
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 1.6e-202 709.5 437 83.1
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 2.7e-202 708.8 425 86.4
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 2.7e-202 708.8 437 83.1
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 4.6e-202 708.0 437 84.2
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 4.6e-202 708.0 438 83.8
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 1.0e-201 706.8 437 82.4
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 1.0e-201 706.8 437 82.4
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 1.0e-201 706.8 435 83.4
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 3.9e-201 704.9 438 82.4
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 5.1e-201 704.5 437 82.4
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 1.1e-200 703.4 400 91.5
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 1.5e-200 703.0 448 82.1
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 1.5e-200 703.0 420 84.8
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 5.6e-200 701.0 437 82.8
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 1.3e-199 699.9 437 84.4
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 4.8e-199 698.0 435 82.1
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 3.1e-198 695.3 435 82.3
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 4.0e-198 694.9 436 81.7
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 1.2e-197 693.3 398 89.9
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 5.1e-193 677.9 436 82.1
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 6.7e-193 677.6 435 80.2
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 4.3e-192 674.9 399 86.7
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 2.8e-191 672.2 423 82.5
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.2e-189 666.8 436 78.7
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 6.1e-186 654.4 395 85.3
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 7.4e-184 647.5 396 83.6
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 1.5e-181 639.8 399 80.2
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 1.0e-180 637.1 437 73.9
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 6.5e-180 634.4 436 75.5
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.1e-178 629.4 403 79.7
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 4.7e-178 628.2 419 77.3
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 2.6e-176 622.5 434 73.7
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 3.3e-176 622.1 433 72.7
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 4.4e-176 621.7 389 82.0
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 1.5e-173 613.2 427 73.8
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 6.5e-172 607.8 421 74.1
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 1.9e-171 606.3 416 73.8
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 4.2e-171 605.1 434 75.6
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 5.5e-171 604.7 432 71.5
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 1.4e-169 600.1 596 58.4
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 2.6e-168 595.9 424 71.9
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 3.0e-153 545.8 347 80.1
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 4.5e-149 531.9 443 67.5
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 2.8e-146 522.7 315 84.4
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 5.7e-144 515.0 308 86.4
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 4.0e-137 492.3 409 67.7
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 9.2e-134 481.1 299 82.6
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 4.0e-129 465.7 354 68.1
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 1.2e-128 464.2 437 60.0
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 1.1e-123 447.6 437 59.7
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 2.5e-123 446.4 269 84.8
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 2.9e-119 433.0 258 85.7
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 1.9e-118 430.3 282 79.4
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 1.6e-114 417.2 466 49.6
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 1.6e-109 400.6 243 84.8
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 1.4e-102 377.5 299 69.9
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 6.0e-93 345.5 198 90.4
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 2.2e-79 300.4 298 60.4
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 1.1e-75 288.1 186 78.0
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.4e-65 254.6 173 72.8
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 1.3e-63 248.1 195 64.6
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 3.8e-55 219.9 129 86.0
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 5.5e-54 216.1 144 77.1
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 2.3e-52 210.7 193 57.5
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 8.0e-45 185.7 126 74.6
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 1.0e-39 168.7 105 83.8
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 8.0e-37 159.1 101 83.2
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 4.9e-34 149.8 103 73.8
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 2.3e-31 141.0 113 71.7
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 2.3e-31 141.0 93 71.0
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 4.4e-27 126.7 101 69.3
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 8.3e-26 122.5 69 89.9
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 3.2e-25 120.6 78 79.5
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 3.5e-24 117.1 90 62.2
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 6.2e-21 106.3 69 82.6
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 3.0e-15 87.4 63 76.2
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 1.4e-12 78.6 141 36.9
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 3.4e-11 73.9 58 67.2
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.1e-09 68.9 43 76.7
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 1.4e-09 68.6 38 84.2
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.7e-08 64.3 43 72.1
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 1.0e-07 62.4 92 45.7
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 1.3e-07 62.0 39 82.1


User provided reference genes

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