Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 4.0e-81 304.7 149 100.0
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 7.0e-62 240.7 129 90.7
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 1.6e-61 239.6 129 91.5
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 4.5e-61 238.0 128 89.8
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 1.9e-59 232.6 129 86.0
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 7.3e-59 230.7 127 87.4
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 3.0e-57 225.3 127 85.0
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 6.8e-57 224.2 127 84.3
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 4.4e-56 221.5 129 80.6
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 4.4e-56 221.5 129 80.6
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 7.5e-56 220.7 128 81.2
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 2.9e-55 218.8 129 81.4
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 3.7e-55 218.4 128 80.5
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 1.1e-54 216.9 128 80.5
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 1.1e-54 216.9 128 80.5
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 1.4e-54 216.5 128 79.7
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.8e-54 216.1 127 81.1
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 3.2e-54 215.3 129 78.3
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 4.1e-54 214.9 128 79.7
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 5.4e-54 214.5 129 79.8
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 5.4e-54 214.5 129 79.1
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 7.0e-54 214.2 127 80.3
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 9.2e-54 213.8 127 81.1
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 9.2e-54 213.8 127 80.3
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.2e-53 213.4 129 76.0
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.2e-53 213.4 129 76.7
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 2.0e-53 212.6 126 81.0
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 2.0e-53 212.6 127 79.5
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 2.7e-53 212.2 127 79.5
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 2.7e-53 212.2 128 78.1
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 3.5e-53 211.8 126 77.8
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 3.5e-53 211.8 129 76.7
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 4.6e-53 211.5 129 75.2
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 4.6e-53 211.5 128 78.1
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 6.0e-53 211.1 129 78.3
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.0e-52 210.3 125 78.4
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 1.0e-52 210.3 129 78.3
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 1.0e-52 210.3 129 78.3
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 2.3e-52 209.1 129 75.2
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.3e-52 209.1 129 75.2
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 2.3e-52 209.1 126 76.2
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 3.0e-52 208.8 126 77.0
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 3.0e-52 208.8 126 76.2
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 3.0e-52 208.8 126 76.2
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 3.9e-52 208.4 128 75.8
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 3.9e-52 208.4 129 76.7
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 5.0e-52 208.0 125 78.4
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 6.6e-52 207.6 129 76.0
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 6.6e-52 207.6 126 76.2
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 6.6e-52 207.6 126 78.6
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 6.6e-52 207.6 129 77.5
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 8.6e-52 207.2 126 77.0
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 1.1e-51 206.8 126 75.4
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.1e-51 206.8 130 74.6
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 1.1e-51 206.8 126 76.2
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 1.9e-51 206.1 126 75.4
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 1.9e-51 206.1 124 76.6
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 1.9e-51 206.1 127 77.2
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 2.5e-51 205.7 126 76.2
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 2.5e-51 205.7 128 73.4
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 3.3e-51 205.3 124 75.0
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 3.3e-51 205.3 126 74.6
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 4.3e-51 204.9 125 79.2
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 4.3e-51 204.9 124 75.0
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 7.3e-51 204.1 129 75.2
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 7.3e-51 204.1 124 75.8
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 9.5e-51 203.8 124 76.6
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 1.6e-50 203.0 128 72.7
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 1.6e-50 203.0 128 76.6
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 2.8e-50 202.2 129 72.9
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 2.8e-50 202.2 126 70.6
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 3.6e-50 201.8 128 72.7
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 3.6e-50 201.8 128 77.3
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 3.6e-50 201.8 126 74.6
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 4.7e-50 201.4 129 72.9
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 4.7e-50 201.4 124 75.8
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 6.2e-50 201.1 129 71.3
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 6.2e-50 201.1 128 77.3
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 6.2e-50 201.1 128 77.3
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 6.2e-50 201.1 128 75.8
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 1.1e-49 200.3 129 69.8
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 1.1e-49 200.3 128 78.1
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 1.4e-49 199.9 127 72.4
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 1.8e-49 199.5 128 74.2
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.3e-49 199.1 128 75.8
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 3.1e-49 198.7 128 76.6
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 3.1e-49 198.7 128 78.1
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 3.1e-49 198.7 127 73.2
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 4.0e-49 198.4 115 87.8
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 6.8e-49 197.6 123 74.8
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 8.9e-49 197.2 125 74.4
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 8.9e-49 197.2 128 76.6
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 1.5e-48 196.4 127 70.1
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 2.0e-48 196.1 124 75.0
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 2.6e-48 195.7 129 72.1
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.6e-48 195.7 128 74.2
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 3.4e-48 195.3 129 69.0
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 3.4e-48 195.3 127 71.7
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 5.8e-48 194.5 149 65.8
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 5.8e-48 194.5 129 72.9
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 7.5e-48 194.1 127 71.7
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 9.8e-48 193.7 129 69.0
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 9.8e-48 193.7 126 72.2
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 9.8e-48 193.7 128 71.1
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 1.3e-47 193.4 128 71.1
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 1.7e-47 193.0 128 70.3
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 1.7e-47 193.0 130 70.8
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 2.9e-47 192.2 125 72.0
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 6.4e-47 191.0 126 72.2
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 8.3e-47 190.7 127 73.2
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 1.1e-46 190.3 127 70.1
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 2.4e-46 189.1 124 72.6
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 2.4e-46 189.1 124 72.6
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 4.1e-46 188.3 124 72.6
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 5.4e-46 188.0 129 69.8
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 7.0e-46 187.6 124 71.8
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 2.0e-45 186.0 125 69.6
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 3.5e-45 185.3 129 66.7
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 3.5e-45 185.3 125 68.0
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 4.6e-45 184.9 124 71.0
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 4.6e-45 184.9 124 71.0
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 7.8e-45 184.1 125 70.4
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 1.0e-44 183.7 124 71.8
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 1.0e-44 183.7 124 70.2
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 1.0e-44 183.7 125 68.0
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 1.3e-44 183.3 124 70.2
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 2.3e-44 182.6 124 71.0
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 3.0e-44 182.2 124 70.2
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 1.1e-43 180.3 127 67.7
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 1.1e-43 180.3 124 68.5
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 1.5e-43 179.9 127 66.9
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 1.5e-43 179.9 122 70.5
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 4.3e-43 178.3 123 71.5
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 4.7e-42 174.9 124 67.7
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 4.7e-42 174.9 123 65.0
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 6.2e-42 174.5 122 68.0
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 8.1e-42 174.1 125 63.2
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 8.9e-41 170.6 128 64.1
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 4.4e-40 168.3 129 65.9
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 2.2e-39 166.0 129 65.9
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 3.7e-39 165.2 125 62.4
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 4.9e-39 164.9 122 62.3
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 8.3e-39 164.1 122 63.1
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 1.9e-35 152.9 125 56.8
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 6.8e-33 144.4 128 53.9
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 8.9e-33 144.1 125 54.4
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 2.6e-32 142.5 128 54.7
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 7.6e-32 141.0 136 56.6
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.9e-31 139.0 129 58.1
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 2.9e-31 139.0 88 75.0
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 9.2e-30 134.0 129 55.8
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 2.7e-29 132.5 73 79.5
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 5.1e-28 128.3 70 78.6
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 8.7e-28 127.5 73 75.3
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 2.5e-27 125.9 72 75.0
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 3.3e-27 125.6 110 60.0
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 4.3e-27 125.2 73 74.0
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 1.4e-25 120.2 73 72.6
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 4.0e-25 118.6 73 69.9
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 2.0e-24 116.3 79 73.4
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 9.9e-24 114.0 131 45.8
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 1.4e-17 93.6 87 49.4
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 1.8e-17 93.2 157 35.7
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 2.4e-17 92.8 112 42.9
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 2.6e-16 89.4 113 42.5
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 7.6e-16 87.8 136 33.8
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 5.4e-14 81.6 112 38.4


User provided reference genes

Program Settings