Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 1.6e-166 589.3 288 100.0
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 1.9e-135 486.1 302 81.8
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 7.0e-135 484.2 302 82.8
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 7.0e-135 484.2 302 81.5
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 6.6e-133 477.6 300 81.7
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 2.1e-131 472.6 302 78.8
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 6.2e-131 471.1 302 78.5
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 2.0e-129 466.1 302 77.5
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.7e-128 463.0 302 77.8
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 3.2e-127 458.8 302 77.5
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 2.1e-126 456.1 302 76.2
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 3.5e-126 455.3 302 76.8
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 4.6e-126 454.9 319 73.7
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 6.0e-126 454.5 302 75.5
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 7.8e-126 454.1 302 75.5
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.3e-125 453.4 301 76.1
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.3e-125 453.4 302 76.2
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 3.0e-125 452.2 301 75.7
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 3.0e-125 452.2 302 75.2
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 3.0e-125 452.2 302 75.8
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 1.5e-124 449.9 302 73.5
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.9e-124 449.5 302 76.2
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 2.5e-124 449.1 301 74.4
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 3.3e-124 448.7 302 74.2
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 3.3e-124 448.7 302 74.2
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 3.3e-124 448.7 302 75.2
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 4.3e-124 448.4 302 73.5
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 5.6e-124 448.0 302 73.8
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 7.3e-124 447.6 301 74.8
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 9.5e-124 447.2 302 75.2
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 9.5e-124 447.2 299 75.6
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 9.5e-124 447.2 302 73.5
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 9.5e-124 447.2 301 73.4
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 9.5e-124 447.2 302 74.2
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.6e-123 446.4 302 73.8
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 1.6e-123 446.4 302 74.2
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 2.1e-123 446.0 303 72.3
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.8e-123 445.7 302 74.8
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 2.8e-123 445.7 302 73.5
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 3.6e-123 445.3 302 75.2
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 3.6e-123 445.3 302 75.2
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 3.6e-123 445.3 302 73.8
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 4.7e-123 444.9 302 73.5
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 8.1e-123 444.1 302 74.5
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.1e-122 443.7 302 72.8
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 1.1e-122 443.7 302 73.2
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 2.3e-122 442.6 302 72.8
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 2.3e-122 442.6 302 74.5
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 3.1e-122 442.2 302 74.8
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 3.1e-122 442.2 301 74.8
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 4.0e-122 441.8 302 74.5
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 4.0e-122 441.8 302 72.5
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 8.9e-122 440.7 302 74.2
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 1.2e-121 440.3 302 72.5
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 1.2e-121 440.3 302 74.2
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 1.2e-121 440.3 302 72.5
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 1.5e-121 439.9 302 72.8
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 2.0e-121 439.5 302 72.2
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 2.0e-121 439.5 302 72.2
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 2.6e-121 439.1 302 74.2
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 3.4e-121 438.7 301 74.4
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 4.4e-121 438.3 302 72.2
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 7.6e-121 437.6 302 71.9
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 1.7e-120 436.4 301 71.4
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 2.2e-120 436.0 302 73.5
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 3.7e-120 435.3 302 72.2
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 4.9e-120 434.9 302 71.5
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 6.4e-120 434.5 302 71.9
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 6.4e-120 434.5 302 71.5
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 8.4e-120 434.1 302 72.8
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 8.4e-120 434.1 302 71.2
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 1.1e-119 433.7 302 72.2
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 1.1e-119 433.7 301 72.1
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 1.4e-119 433.3 324 69.8
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 1.4e-119 433.3 302 71.5
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 1.4e-119 433.3 302 70.2
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 1.9e-119 433.0 302 71.5
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 2.4e-119 432.6 335 66.3
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 2.4e-119 432.6 302 70.5
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 3.2e-119 432.2 302 71.5
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 4.1e-119 431.8 319 70.2
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 5.4e-119 431.4 302 71.9
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 1.2e-118 430.3 302 70.5
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.6e-118 429.9 302 70.5
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 2.7e-118 429.1 302 70.2
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 3.5e-118 428.7 318 70.1
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 4.6e-118 428.3 302 72.2
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 4.6e-118 428.3 301 72.4
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 1.3e-117 426.8 308 70.8
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 1.7e-117 426.4 302 70.2
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 1.7e-117 426.4 302 70.2
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 2.3e-117 426.0 302 70.5
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 3.0e-117 425.6 302 69.9
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 5.1e-117 424.9 318 69.8
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 6.6e-117 424.5 302 70.2
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 8.6e-117 424.1 302 70.2
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 8.6e-117 424.1 316 68.7
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.1e-116 423.7 302 70.2
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 1.9e-116 422.9 302 68.5
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 2.5e-116 422.5 302 69.9
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 2.5e-116 422.5 302 69.9
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 3.3e-116 422.2 318 69.5
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 4.3e-116 421.8 302 68.5
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 7.3e-116 421.0 302 69.5
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 7.3e-116 421.0 299 70.2
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 7.3e-116 421.0 302 71.2
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 2.1e-115 419.5 302 69.9
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 2.8e-115 419.1 301 71.4
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 8.1e-115 417.5 302 68.9
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 1.1e-114 417.2 302 68.5
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 1.1e-114 417.2 302 69.2
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 1.1e-114 417.2 302 68.9
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 1.4e-114 416.8 299 69.2
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 2.4e-114 416.0 302 68.9
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 3.1e-114 415.6 302 69.2
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 1.2e-113 413.7 302 66.6
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 4.4e-113 411.8 302 67.5
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.2e-112 409.5 302 70.2
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 3.8e-112 408.7 302 68.5
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 6.4e-112 407.9 302 68.5
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 7.1e-111 404.4 302 68.5
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 1.2e-110 403.7 302 65.6
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 1.6e-110 403.3 342 60.8
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 6.0e-110 401.4 302 65.9
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 1.0e-109 400.6 302 65.9
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 1.7e-109 399.8 302 64.9
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 6.6e-109 397.9 302 64.9
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 3.6e-107 392.1 385 54.0
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 4.8e-107 391.7 302 63.6
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 1.4e-106 390.2 302 67.9
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.8e-106 389.8 301 64.5
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 4.0e-106 388.7 301 63.8
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 1.5e-105 386.7 302 66.2
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 3.8e-104 382.1 302 65.9
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 6.0e-102 374.8 302 63.9
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 5.6e-100 368.2 250 73.2
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 4.8e-99 365.2 288 65.3
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 3.1e-98 362.5 266 70.7
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 9.0e-98 360.9 288 63.5
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 1.6e-94 350.1 303 59.4
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 8.1e-91 337.8 302 56.6
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 1.3e-88 330.5 302 55.3
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 3.5e-86 322.4 302 54.6
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 8.7e-85 317.8 235 68.9
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.3e-83 313.9 255 64.3
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 4.1e-82 308.9 172 90.1
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.2e-78 297.4 198 74.2
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 4.6e-78 295.4 178 82.6
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 5.1e-77 292.0 198 72.7
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 1.3e-75 287.3 314 49.7
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 5.3e-66 255.4 178 69.7
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 1.6e-62 243.8 206 60.2
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 1.9e-55 220.3 297 42.1
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 3.2e-55 219.5 291 42.6
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 2.1e-54 216.9 388 33.8
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 3.0e-53 213.0 151 70.9
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 5.2e-53 212.2 258 50.0
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 7.5e-52 208.4 286 40.9
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 9.7e-52 208.0 134 73.9
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 3.7e-51 206.1 181 61.3
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 2.0e-49 200.3 173 59.0
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 4.5e-49 199.1 115 87.8
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 2.7e-46 189.9 154 63.6
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 4.0e-45 186.0 119 73.1
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 8.5e-40 168.3 178 55.1
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 8.0e-38 161.8 121 64.5
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.6e-36 156.8 283 37.8
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 1.8e-34 150.6 115 66.1
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 5.9e-33 145.6 283 38.2
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 5.0e-32 142.5 95 73.7
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.4e-29 134.4 114 57.0
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 2.9e-27 126.7 86 72.1
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 1.6e-22 110.9 71 74.6
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 6.8e-21 105.5 96 59.4
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.2e-17 94.7 71 66.2
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.1e-14 84.0 52 73.1
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 2.2e-11 73.9 76 46.1
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 6.4e-11 72.4 76 46.1


User provided reference genes

Program Settings