Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p031990 Quercus lobata HOM05D006153 ORTHO05D007701 3.0e-53 211.5 97 100.0
Duzib132G0541 Durio zibethinus HOM05D006153 ORTHO05D007701 2.9e-24 115.2 90 60.0
Haze_10254 Corylus avellana HOM05D006153 ORTHO05D007701 3.2e-23 111.7 91 58.2
CiPaw.05G015200 Carya illinoinensis HOM05D006153 ORTHO05D007701 7.1e-23 110.5 100 61.0
Manes.07G064400 Manihot esculenta HOM05D006153 ORTHO05D007701 9.3e-23 110.2 85 57.6
Glyma.10G259200 Glycine max HOM05D006153 ORTHO05D007701 4.6e-22 107.8 80 61.2
Gohir.A01G008400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 1.0e-21 106.7 98 53.1
Gohir.D13G044400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 2.3e-21 105.5 89 53.9
Gorai.013G049200 Gossypium raimondii HOM05D006153 ORTHO05D007701 2.3e-21 105.5 89 53.9
Glyma.20G131700 Glycine max HOM05D006153 ORTHO05D007701 3.9e-21 104.8 80 61.2
Potri.001G296900 Populus trichocarpa HOM05D006153 ORTHO05D007701 8.7e-21 103.6 88 53.4
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 2.5e-20 102.1 83 56.6
Gorai.002G009800 Gossypium raimondii HOM05D006153 ORTHO05D007701 3.3e-20 101.7 100 51.0
Duzib052G0610 Durio zibethinus HOM05D006153 ORTHO05D007701 4.3e-20 101.3 94 51.1
Phvul.007G043000 Phaseolus vulgaris HOM05D006153 ORTHO05D007701 5.6e-20 100.9 82 56.1
Dinv42217 Davidia involucrata HOM05D006153 ORTHO05D007701 1.3e-19 99.8 90 51.1
Cfa004655 Carpinus fangiana HOM05D006153 ORTHO05D007701 2.8e-19 98.6 78 57.7
QL11p029270 Quercus lobata HOM05D006153 ORTHO05D007701 2.8e-19 98.6 94 50.0
Actinidia34374 Actinidia chinensis HOM05D006153 ORTHO05D007701 8.2e-19 97.1 86 54.7
Cfa004694 Carpinus fangiana HOM05D006153 ORTHO05D007701 8.2e-19 97.1 88 51.1
Potri.009G091100 Populus trichocarpa HOM05D006153 ORTHO05D007701 8.2e-19 97.1 80 57.5
Sabra16G0186000 Salix brachista HOM05D006153 ORTHO05D007701 8.2e-19 97.1 73 58.9
CSS0010428 Camellia sinensis var. sinensis HOM05D006153 ORTHO05D007701 1.1e-18 96.7 79 55.7
Lalb_Chr06g0165291 Lupinus albus HOM05D006153 ORTHO05D007701 1.1e-18 96.7 70 62.9
Sabra09G0070400 Salix brachista HOM05D006153 ORTHO05D007701 1.1e-18 96.7 79 54.4
TWI23G0900 Tripterygium wilfordii HOM05D006153 ORTHO05D007701 1.1e-18 96.7 81 59.3
GSVIVG01037871001 Vitis vinifera HOM05D006153 ORTHO05D007701 1.1e-18 96.7 94 55.3
Cpa.g.sc200.7 Carica papaya HOM05D006153 ORTHO05D007701 3.1e-18 95.1 90 55.6
GSVIVG01037872001 Vitis vinifera HOM05D006153 ORTHO05D007701 5.3e-18 94.4 83 57.8
Haze_10299 Corylus avellana HOM05D006153 ORTHO05D007701 6.9e-18 94.0 89 50.6
VMungo0720G0345 Vigna mungo HOM05D006153 ORTHO05D007701 9.0e-18 93.6 82 51.2
GSVIVG01037873001 Vitis vinifera HOM05D006153 ORTHO05D007701 9.0e-18 93.6 87 55.2
Haze_10289 Corylus avellana HOM05D006153 ORTHO05D007701 1.2e-17 93.2 87 48.3
MD10G1102200 Malus domestica HOM05D006153 ORTHO05D007701 1.5e-17 92.8 110 50.0
FvH4_2g04480 Fragaria vesca HOM05D006153 ORTHO05D007701 2.6e-17 92.0 96 53.1
FAN24G1230 Fragaria x ananassa HOM05D006153 ORTHO05D007701 2.6e-17 92.0 96 53.1
FAN20G1027 Fragaria x ananassa HOM05D006153 ORTHO05D007701 3.4e-17 91.7 96 53.1
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 3.4e-17 91.7 52 69.2
TAR381G0917 Trochodendron aralioides HOM05D006153 ORTHO05D007701 3.4e-17 91.7 93 49.5
Nn5g30510 Nelumbo nucifera HOM05D006153 ORTHO05D007701 4.5e-17 91.3 85 55.3
RcHm_v2.0_Chr6g0253971 Rosa chinensis HOM05D006153 ORTHO05D007701 4.5e-17 91.3 97 51.5
COL.COLO4_32545 Corchorus olitorius HOM05D006153 ORTHO05D007701 5.8e-17 90.9 53 64.2
MD05G1096000 Malus domestica HOM05D006153 ORTHO05D007701 5.8e-17 90.9 99 51.5
Prupe.8G140400 Prunus persica HOM05D006153 ORTHO05D007701 5.8e-17 90.9 97 52.6
FAN15G1936 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.0e-16 90.1 97 53.6
Nitab4.5_0002017g0030 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.7e-16 89.4 76 53.9
Manes.10G074900 Manihot esculenta HOM05D006153 ORTHO05D007701 2.2e-16 89.0 97 46.4
Peaxi162Scf00003g00261 Petunia axillaris HOM05D006153 ORTHO05D007701 2.9e-16 88.6 78 52.6
Dinv15786 Davidia involucrata HOM05D006153 ORTHO05D007701 3.8e-16 88.2 87 52.9
FAN27G0726 Fragaria x ananassa HOM05D006153 ORTHO05D007701 3.8e-16 88.2 91 50.5
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 8.4e-16 87.0 76 52.6
Thecc.02G113400 Theobroma cacao HOM05D006153 ORTHO05D007701 1.4e-15 86.3 80 50.0
PGR042G3678 Punica granatum HOM05D006153 ORTHO05D007701 5.5e-15 84.3 89 44.9
Sc14g0002580 Simmondsia chinensis HOM05D006153 ORTHO05D007701 7.1e-15 84.0 73 52.1
CANSAT25G0942 Cannabis sativa HOM05D006153 ORTHO05D007701 1.6e-14 82.8 59 61.0
Nitab4.5_0001105g0220 Nicotiana tabacum HOM05D006153 ORTHO05D007701 2.7e-14 82.0 59 57.6
Nitab4.5_0004685g0060 Nicotiana tabacum HOM05D006153 ORTHO05D007701 2.7e-14 82.0 59 57.6
Peaxi162Scf00152g00320 Petunia axillaris HOM05D006153 ORTHO05D007701 2.7e-14 82.0 90 46.7
Hund06709 Selenicereus undatus HOM05D006153 ORTHO05D007701 2.7e-14 82.0 56 62.5
BcaC05g28465 Brassica carinata HOM05D006153 ORTHO05D007701 3.5e-14 81.6 71 50.7
A05p30090 Brassica napus HOM05D006153 ORTHO05D007701 3.5e-14 81.6 71 50.7
C05p45510 Brassica napus HOM05D006153 ORTHO05D007701 3.5e-14 81.6 71 50.7
BolC5t33274H Brassica oleracea HOM05D006153 ORTHO05D007701 3.5e-14 81.6 71 50.7
BraA05t21849Z Brassica rapa HOM05D006153 ORTHO05D007701 3.5e-14 81.6 71 50.7
Lj1g0020403 Lotus japonicus HOM05D006153 ORTHO05D007701 3.5e-14 81.6 76 55.3
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 3.5e-14 81.6 68 52.9
Actinidia27982 Actinidia chinensis HOM05D006153 ORTHO05D007701 4.6e-14 81.3 56 60.7
Hma1.2p1_1174F.1_g263880 Hydrangea macrophylla HOM05D006153 ORTHO05D007701 4.6e-14 81.3 94 44.7
BcaC09g48920 Brassica carinata HOM05D006153 ORTHO05D007701 7.9e-14 80.5 84 46.4
C01p44580 Brassica napus HOM05D006153 ORTHO05D007701 7.9e-14 80.5 84 46.4
BcaB04g20697 Brassica carinata HOM05D006153 ORTHO05D007701 1.0e-13 80.1 69 52.2
BcaB06g26014 Brassica carinata HOM05D006153 ORTHO05D007701 1.0e-13 80.1 71 49.3
Eucgr.G00438 Eucalyptus grandis HOM05D006153 ORTHO05D007701 1.3e-13 79.7 93 43.0
BolC1t04422H Brassica oleracea HOM05D006153 ORTHO05D007701 1.8e-13 79.3 84 46.4
HanXRQChr16g0514451 Helianthus annuus HOM05D006153 ORTHO05D007701 1.8e-13 79.3 47 63.8
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 1.8e-13 79.3 57 57.9
AL3G32960 Arabidopsis lyrata HOM05D006153 ORTHO05D007701 2.3e-13 79.0 60 55.0
A01p35130 Brassica napus HOM05D006153 ORTHO05D007701 2.3e-13 79.0 95 42.1
BraA01t03595Z Brassica rapa HOM05D006153 ORTHO05D007701 2.3e-13 79.0 95 42.1
PSO541G5112 Papaver somniferum HOM05D006153 ORTHO05D007701 2.3e-13 79.0 44 70.5
BcaB04g20696 Brassica carinata HOM05D006153 ORTHO05D007701 3.0e-13 78.6 95 41.1
Solyc01g107280.3 Solanum lycopersicum HOM05D006153 ORTHO05D007701 5.1e-13 77.8 56 57.1
Sopen01g049530 Solanum pennellii HOM05D006153 ORTHO05D007701 5.1e-13 77.8 56 57.1
A01p35140 Brassica napus HOM05D006153 ORTHO05D007701 6.7e-13 77.4 66 50.0
BraA01t03596Z Brassica rapa HOM05D006153 ORTHO05D007701 6.7e-13 77.4 66 50.0
Sp3g17600 Schrenkiella parvula HOM05D006153 ORTHO05D007701 6.7e-13 77.4 71 49.3
EL10Ac8g19360 Beta vulgaris HOM05D006153 ORTHO05D007701 8.7e-13 77.0 67 50.7
Oeu013772.1 Olea europaea HOM05D006153 ORTHO05D007701 8.7e-13 77.0 50 54.0
AT3G19550 Arabidopsis thaliana HOM05D006153 ORTHO05D007701 1.1e-12 76.6 52 55.8
CARHR094970 Cardamine hirsuta HOM05D006153 ORTHO05D007701 1.1e-12 76.6 52 55.8
ClCG02G006680 Citrullus lanatus HOM05D006153 ORTHO05D007701 1.5e-12 76.3 88 43.2
MELO3C018509.2 Cucumis melo HOM05D006153 ORTHO05D007701 1.5e-12 76.3 46 65.2
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 1.9e-12 75.9 80 50.0
Aa31LG8G6290 Aethionema arabicum HOM05D006153 ORTHO05D007701 2.5e-12 75.5 55 58.2
Thhalv10021914m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 2.5e-12 75.5 56 57.1
HanXRQChr16g0514901 Helianthus annuus HOM05D006153 ORTHO05D007701 2.5e-12 75.5 46 60.9
Rhsim05G0089900 Rhododendron simsii HOM05D006153 ORTHO05D007701 2.5e-12 75.5 58 55.2
CsaV3_7G007950 Cucumis sativus L. HOM05D006153 ORTHO05D007701 3.3e-12 75.1 46 65.2
Peaxi162Scf00016g00267 Petunia axillaris HOM05D006153 ORTHO05D007701 4.3e-12 74.7 45 66.7
DCAR_001679 Daucus carota HOM05D006153 ORTHO05D007701 7.4e-12 73.9 94 40.4
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 9.7e-12 73.6 46 56.5
PGSC0003DMG400025850 Solanum tuberosum HOM05D006153 ORTHO05D007701 9.7e-12 73.6 49 61.2
Gohir.A13G045400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 1.3e-11 73.2 63 55.6
HanXRQChr16g0514921 Helianthus annuus HOM05D006153 ORTHO05D007701 1.3e-11 73.2 46 60.9
ECA234G4313 Erigeron canadensis HOM05D006153 ORTHO05D007701 1.6e-11 72.8 43 60.5
Carub.0003s1938 Capsella rubella HOM05D006153 ORTHO05D007701 2.2e-11 72.4 52 53.8
Ca_24350_v3 Cicer arietinum L. HOM05D006153 ORTHO05D007701 2.8e-11 72.0 67 50.7
Lsat_1_v5_gn_5_114460 Lactuca sativa HOM05D006153 ORTHO05D007701 2.8e-11 72.0 47 61.7
Thhalv10021904m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 3.7e-11 71.6 71 46.5
AUR62027357 Chenopodium quinoa HOM05D006153 ORTHO05D007701 4.8e-11 71.2 55 50.9
AUR62031329 Chenopodium quinoa HOM05D006153 ORTHO05D007701 4.8e-11 71.2 55 50.9
Migut.I00275 Erythranthe guttata HOM05D006153 ORTHO05D007701 4.8e-11 71.2 42 61.9
Psat4g228040 Pisum sativum HOM05D006153 ORTHO05D007701 4.8e-11 71.2 58 55.2
HanXRQChr13g0425861 Helianthus annuus HOM05D006153 ORTHO05D007701 8.2e-11 70.5 46 56.5
Medtr5g005180 Medicago truncatula HOM05D006153 ORTHO05D007701 8.2e-11 70.5 40 65.0
DCAR_001674 Daucus carota HOM05D006153 ORTHO05D007701 1.1e-10 70.1 57 56.1
DCAR_003609 Daucus carota HOM05D006153 ORTHO05D007701 1.1e-10 70.1 51 58.8
HanXRQChr16g0514461 Helianthus annuus HOM05D006153 ORTHO05D007701 1.4e-10 69.7 46 58.7
Os12g0507700 Oryza sativa ssp. japonica HOM05D006153 ORTHO05D007701 1.4e-10 69.7 73 43.8
Ciclev10029838m.g Citrus clementina HOM05D006153 ORTHO05D007701 1.8e-10 69.3 71 52.1
Zm00001eb138020 Zea mays HOM05D006153 ORTHO05D007701 2.4e-10 68.9 86 41.9
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 5.3e-10 67.8 60 51.7
Zm00001eb264740 Zea mays HOM05D006153 ORTHO05D007701 9.0e-10 67.0 43 58.1
MBI16_g15146_MAGBIO Magnolia biondii HOM05D006153 ORTHO05D007701 1.2e-09 66.6 46 54.3
Eucgr.G01281 Eucalyptus grandis HOM05D006153 ORTHO05D007701 2.6e-09 65.5 73 42.5
TPR.G8325 Trifolium pratense HOM05D006153 ORTHO05D007701 7.6e-09 63.9 67 46.3
ECA234G3366 Erigeron canadensis HOM05D006153 ORTHO05D007701 2.9e-08 62.0 41 61.0
SGA_v2.0_scaffold624G53237 Striga asiatica HOM05D006153 ORTHO05D007701 6.5e-08 60.8 83 38.6
Cpa.g.sc2471.1 Carica papaya HOM05D008232 ORTHO05D010390 4.2e-07 58.2 74 41.9
TAR383G0592 Trochodendron aralioides HOM05D008232 ORTHO05D010390 4.2e-07 58.2 38 57.9
Aqoxy6G02750 Aquilegia oxysepala HOM05D000096 ORTHO05D000045 1.6e-06 56.2 35 62.9


User provided reference genes

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