Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p031741 Quercus lobata HOM05D005520 ORTHO05D006633 6.6e-159 563.9 270 100.0
Cfa004647 Carpinus fangiana HOM05D005520 ORTHO05D006633 5.5e-89 331.6 270 64.8
Haze_10245 Corylus avellana HOM05D005520 ORTHO05D006633 3.0e-87 325.9 268 63.8
CiPaw.06G167100 Carya illinoinensis HOM05D005520 ORTHO05D006633 8.5e-82 307.8 267 61.4
RcHm_v2.0_Chr6g0253041 Rosa chinensis HOM05D005520 ORTHO05D006633 3.8e-74 282.3 266 57.9
Dinv42222 Davidia involucrata HOM05D005520 ORTHO05D006633 1.2e-72 277.3 271 56.1
Manes.10G081300 Manihot esculenta HOM05D005520 ORTHO05D006633 1.2e-72 277.3 261 59.0
Dinv15795 Davidia involucrata HOM05D005520 ORTHO05D006633 1.4e-71 273.9 269 55.8
MD10G1103100 Malus domestica HOM05D005520 ORTHO05D006633 2.3e-71 273.1 269 55.8
Prupe.8G141400 Prunus persica HOM05D005520 ORTHO05D006633 3.9e-71 272.3 272 54.4
Potri.009G090200 Populus trichocarpa HOM05D005520 ORTHO05D006633 6.7e-71 271.6 272 56.2
CSS0014981 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 5.7e-70 268.5 267 54.3
FAN20G2059 Fragaria x ananassa HOM05D005520 ORTHO05D006633 9.7e-70 267.7 285 51.9
MD05G1097000 Malus domestica HOM05D005520 ORTHO05D006633 2.2e-69 266.5 273 53.5
Rhsim11G0154200 Rhododendron simsii HOM05D005520 ORTHO05D006633 4.8e-69 265.4 266 54.5
Actinidia34369 Actinidia chinensis HOM05D005520 ORTHO05D006633 5.3e-68 261.9 270 54.1
Sabra09G0069800 Salix brachista HOM05D005520 ORTHO05D006633 7.0e-68 261.5 266 54.1
PGR042G2710 Punica granatum HOM05D005520 ORTHO05D006633 2.0e-67 260.0 266 54.1
arahy.Tifrunner.gnm1.ann1.ZQ2RMB Arachis hypogaea HOM05D005520 ORTHO05D006633 2.6e-67 259.6 271 53.5
Eucgr.G01264 Eucalyptus grandis HOM05D005520 ORTHO05D006633 1.0e-66 257.7 265 52.5
MSTRG.16689 Avicennia marina HOM05D005520 ORTHO05D006633 2.2e-66 256.5 268 53.0
GSVIVG01037859001 Vitis vinifera HOM05D005520 ORTHO05D006633 3.8e-66 255.8 271 53.1
Migut.F01600 Erythranthe guttata HOM05D005520 ORTHO05D006633 8.5e-66 254.6 269 52.8
Sc18g0003610 Simmondsia chinensis HOM05D005520 ORTHO05D006633 2.5e-65 253.1 270 51.9
Cpa.g.sc106.74 Carica papaya HOM05D005520 ORTHO05D006633 3.2e-65 252.7 286 50.0
Gohir.A04G118800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 3.2e-65 252.7 261 52.5
Gohir.D04G160500 Gossypium hirsutum HOM05D005520 ORTHO05D006633 3.2e-65 252.7 261 52.9
Gorai.012G148200 Gossypium raimondii HOM05D005520 ORTHO05D006633 3.2e-65 252.7 261 52.9
Ciclev10029310m.g Citrus clementina HOM05D005520 ORTHO05D006633 1.2e-64 250.8 274 54.4
TPR.G18583 Trifolium pratense HOM05D005520 ORTHO05D006633 1.2e-64 250.8 267 52.1
COL.COLO4_32538 Corchorus olitorius HOM05D005520 ORTHO05D006633 1.6e-64 250.4 283 51.6
TWI14G1052 Tripterygium wilfordii HOM05D005520 ORTHO05D006633 1.6e-64 250.4 272 51.5
TPR.G14598 Trifolium pratense HOM05D005520 ORTHO05D006633 2.1e-64 250.0 271 51.3
Lj3g0017538 Lotus japonicus HOM05D005520 ORTHO05D006633 2.7e-64 249.6 269 52.0
Medtr8g045480 Medicago truncatula HOM05D005520 ORTHO05D006633 2.7e-64 249.6 267 50.9
THA.LOC104825832 Tarenaya hassleriana HOM05D005520 ORTHO05D006633 2.7e-64 249.6 264 53.4
arahy.Tifrunner.gnm1.ann1.DF92AY Arachis hypogaea HOM05D005520 ORTHO05D006633 3.6e-64 249.2 286 50.7
Sed0007262 Sechium edule HOM05D005520 ORTHO05D006633 6.1e-64 248.4 268 52.6
Duzib052G0352 Durio zibethinus HOM05D005520 ORTHO05D006633 8.0e-64 248.1 260 53.1
FAN24G1644 Fragaria x ananassa HOM05D005520 ORTHO05D006633 1.0e-63 247.7 265 52.8
Lalb_Chr24g0402091 Lupinus albus HOM05D005520 ORTHO05D006633 1.8e-63 246.9 268 51.1
Medtr1g050465 Medicago truncatula HOM05D005520 ORTHO05D006633 2.3e-63 246.5 267 50.2
C03p89340 Brassica napus HOM05D005520 ORTHO05D006633 3.0e-63 246.1 267 52.1
BolC3t21249H Brassica oleracea HOM05D005520 ORTHO05D006633 4.0e-63 245.7 267 52.4
VMungo0251G2197 Vigna mungo HOM05D005520 ORTHO05D006633 5.2e-63 245.4 267 52.1
Phvul.003G276100 Phaseolus vulgaris HOM05D005520 ORTHO05D006633 6.7e-63 245.0 269 51.3
EL10Ac8g19365 Beta vulgaris HOM05D005520 ORTHO05D006633 2.6e-62 243.0 269 50.9
BraA08t32384Z Brassica rapa HOM05D005520 ORTHO05D006633 2.6e-62 243.0 267 51.7
Rhsim05G0090000 Rhododendron simsii HOM05D005520 ORTHO05D006633 2.6e-62 243.0 269 51.3
A08p03510 Brassica napus HOM05D005520 ORTHO05D006633 4.4e-62 242.3 267 51.3
AL1G57420 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 5.7e-62 241.9 265 51.7
FAN15G3606 Fragaria x ananassa HOM05D005520 ORTHO05D006633 5.7e-62 241.9 265 52.1
Thhalv10011740m.g Eutrema salsugineum HOM05D005520 ORTHO05D006633 7.4e-62 241.5 266 51.9
Psat4g180760 Pisum sativum HOM05D005520 ORTHO05D006633 9.7e-62 241.1 267 49.4
Sp1g36760 Schrenkiella parvula HOM05D005520 ORTHO05D006633 2.8e-61 239.6 267 51.7
Carub.0001s3909 Capsella rubella HOM05D005520 ORTHO05D006633 3.7e-61 239.2 266 50.8
unitig_37.g12800 Utricularia gibba HOM05D005520 ORTHO05D006633 1.4e-60 237.3 268 49.6
Solyc11g071960.2 Solanum lycopersicum HOM05D005520 ORTHO05D006633 1.3e-58 230.7 264 49.2
Nitab4.5_0000158g0130 Nicotiana tabacum HOM05D005520 ORTHO05D006633 2.2e-58 229.9 255 50.6
SalBow6G1186 Salvia bowleyana HOM05D005520 ORTHO05D006633 3.8e-58 229.2 292 46.2
HanXRQChr03g0069991 Helianthus annuus HOM05D005520 ORTHO05D006633 5.0e-58 228.8 266 48.9
SalBow6G6323 Salvia bowleyana HOM05D005520 ORTHO05D006633 6.5e-58 228.4 292 46.2
CAN.G689.10 Capsicum annuum HOM05D005520 ORTHO05D006633 1.1e-57 227.6 266 48.9
Oeu009678.2 Olea europaea HOM05D005520 ORTHO05D006633 1.1e-57 227.6 286 49.0
CARHR039940 Cardamine hirsuta HOM05D005520 ORTHO05D006633 3.2e-57 226.1 268 48.1
Nitab4.5_0008364g0030 Nicotiana tabacum HOM05D005520 ORTHO05D006633 3.2e-57 226.1 265 48.7
Lj4g0000264 Lotus japonicus HOM05D005520 ORTHO05D006633 9.4e-57 224.6 268 48.1
RhsimUnG0125400 Rhododendron simsii HOM05D005520 ORTHO05D006633 9.4e-57 224.6 266 48.9
Gorai.013G049600 Gossypium raimondii HOM05D005520 ORTHO05D006633 1.2e-56 224.2 264 48.1
Gohir.D13G044800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 3.6e-56 222.6 265 48.7
Sopen11g029630 Solanum pennellii HOM05D005520 ORTHO05D006633 3.6e-56 222.6 264 48.1
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 8.0e-56 221.5 249 52.2
CANSAT25G2379 Cannabis sativa HOM05D005520 ORTHO05D006633 1.0e-55 221.1 267 47.9
DCAR_021961 Daucus carota HOM05D005520 ORTHO05D006633 2.3e-55 219.9 265 47.2
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 2.3e-55 219.9 200 57.0
Cc02_g19680 Coffea canephora HOM05D005520 ORTHO05D006633 3.0e-55 219.5 275 49.1
Lsat_1_v5_gn_9_112480 Lactuca sativa HOM05D005520 ORTHO05D006633 4.0e-55 219.2 267 47.9
Peaxi162Scf00429g00622 Petunia axillaris HOM05D005520 ORTHO05D006633 2.0e-54 216.9 262 48.5
ClCG10G010520 Citrullus lanatus HOM05D005520 ORTHO05D006633 4.4e-54 215.7 268 47.4
Lj5A217G90 Lonicera japonica HOM05D005520 ORTHO05D006633 7.5e-54 214.9 192 58.3
CDE04G3180 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 9.8e-54 214.5 265 44.2
RcHm_v2.0_Chr6g0253051 Rosa chinensis HOM05D005520 ORTHO05D006633 1.3e-53 214.2 191 57.1
SGA_v2.0_scaffold225G43026 Striga asiatica HOM05D005520 ORTHO05D006633 4.8e-53 212.2 194 55.7
PSO541G2579 Papaver somniferum HOM05D005520 ORTHO05D006633 3.1e-52 209.5 259 44.4
PSO675G3202 Papaver somniferum HOM05D005520 ORTHO05D006633 5.4e-52 208.8 259 44.0
Glyma.13G199600 Glycine max HOM05D005520 ORTHO05D006633 7.7e-51 204.9 266 44.0
BcaB04g17288 Brassica carinata HOM05D005520 ORTHO05D006633 1.7e-50 203.8 276 45.7
Migut.B00427 Erythranthe guttata HOM05D005520 ORTHO05D006633 1.7e-50 203.8 195 53.8
PGSC0003DMG400002983 Solanum tuberosum HOM05D005520 ORTHO05D006633 2.9e-50 203.0 198 54.5
ECA240G0181 Erigeron canadensis HOM05D005520 ORTHO05D006633 4.7e-48 195.7 192 53.1
HPP92_023672 Vanilla planifolia HOM05D005520 ORTHO05D006633 3.0e-47 193.0 264 41.3
HPP92_023689 Vanilla planifolia HOM05D005520 ORTHO05D006633 5.2e-47 192.2 264 41.3
CDE07G0521 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 1.3e-45 187.6 190 48.9
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 3.7e-45 186.0 256 43.4
Psat7g087120 Pisum sativum HOM05D005520 ORTHO05D006633 3.5e-43 179.5 234 45.7
AT1G49880 Arabidopsis thaliana HOM05D005520 ORTHO05D006633 7.7e-43 178.3 233 47.6
RcHm_v2.0_Chr6g0253221 Rosa chinensis HOM05D005520 ORTHO05D006633 8.6e-42 174.9 193 50.3
Zm00001eb007440 Zea mays HOM05D005520 ORTHO05D006633 8.6e-42 174.9 264 40.2
Potri.001G296000 Populus trichocarpa HOM05D005520 ORTHO05D006633 1.5e-41 174.1 260 42.7
Atru.chr5.2403 Acer truncatum HOM05D005520 ORTHO05D006633 2.5e-41 173.3 85 92.9
Actinidia27983 Actinidia chinensis HOM05D005520 ORTHO05D006633 3.6e-40 169.5 268 39.2
SEGI_34662 Sequoiadendron giganteum HOM05D005520 ORTHO05D006633 8.0e-40 168.3 293 35.2
Pp3c2_36820 Physcomitrium patens HOM05D005520 ORTHO05D006633 1.0e-39 167.9 196 45.9
SMO172G0176 Selaginella moellendorffii HOM05D005520 ORTHO05D006633 5.2e-39 165.6 183 47.5
FvH4_2g03990 Fragaria vesca HOM05D005520 ORTHO05D006633 6.8e-39 165.2 205 48.3
Psat6g139520 Pisum sativum HOM05D005520 ORTHO05D006633 5.7e-38 162.2 234 41.5
AUR62022505 Chenopodium quinoa HOM05D005520 ORTHO05D006633 7.5e-38 161.8 231 43.7
Mapoly0036s0053 Marchantia polymorpha HOM05D005520 ORTHO05D006633 3.7e-37 159.5 226 39.8
Hund12620 Selenicereus undatus HOM05D005520 ORTHO05D006633 3.7e-37 159.5 279 39.4
Ca_24141_v3 Cicer arietinum L. HOM05D005520 ORTHO05D006633 2.9e-34 149.8 231 40.3
CBR_g2851 Chara braunii HOM05D005520 ORTHO05D006633 3.6e-32 142.9 185 37.3
vmacro01971 Vaccinium macrocarpon HOM05D005520 ORTHO05D006633 1.0e-31 141.4 196 42.3
Thecc.02G114500 Theobroma cacao HOM05D005520 ORTHO05D006633 1.4e-31 141.0 202 43.6
Pp3c19_18310 Physcomitrium patens HOM05D005520 ORTHO05D006633 5.8e-30 135.6 180 40.0
CBR_g31027 Chara braunii HOM05D005520 ORTHO05D006633 7.5e-30 135.2 236 32.6
CSS0022898 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 3.7e-29 132.9 97 66.0
Glyma.15G237900 Glycine max HOM05D005520 ORTHO05D006633 1.0e-26 124.8 114 60.5
Aqoxy6G02727 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 2.3e-26 123.6 60 88.3
Ciclev10029975m.g Citrus clementina HOM05D005520 ORTHO05D006633 3.9e-26 122.9 58 93.1
Nn1g07564 Nelumbo nucifera HOM05D005520 ORTHO05D006633 1.8e-23 114.0 208 36.1
MELO3C017991.2 Cucumis melo HOM05D005520 ORTHO05D006633 2.3e-23 113.6 115 55.7
Cre03.g173200 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 2.6e-22 110.2 194 33.0
Aqoxy6G02716 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 9.8e-22 108.2 226 36.3
Medtr0857s0010 Medicago truncatula HOM05D005520 ORTHO05D006633 3.7e-21 106.3 132 46.2
CBR_g38847 Chara braunii HOM05D005520 ORTHO05D006633 6.0e-19 99.0 175 30.3
Haze_26784 Corylus avellana HOM05D005520 ORTHO05D006633 1.2e-16 91.3 169 27.2
MCO01G292 Micromonas commoda HOM05D005520 ORTHO05D006633 2.8e-16 90.1 165 31.5
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 2.3e-15 87.0 175 28.6
TPR.G17607 Trifolium pratense HOM05D005520 ORTHO05D006633 3.1e-15 86.7 103 51.5
CsaV3_4G000440 Cucumis sativus L. HOM05D005520 ORTHO05D006633 1.2e-14 84.7 115 46.1
ATR0165G041 Amborella trichopoda HOM05D005520 ORTHO05D006633 2.6e-14 83.6 114 39.5
Cre14.g633000 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 4.4e-14 82.8 164 28.0
Os03g0206300 Oryza sativa ssp. japonica HOM05D005520 ORTHO05D006633 4.6e-11 72.8 112 37.5
A06p03510 Brassica napus HOM05D005520 ORTHO05D006633 1.7e-10 70.9 35 82.9
BraA06t23559Z Brassica rapa HOM05D005520 ORTHO05D006633 1.7e-10 70.9 35 82.9
AL1G58430 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 1.9e-09 67.4 174 30.5
SHI05088 Sapria himalayana HOM05D005520 ORTHO05D006633 5.6e-09 65.9 120 40.8
Atru.chr9.1169 Acer truncatum HOM05D003028 ORTHO05D037933 2.6e-06 57.0 34 76.5


User provided reference genes

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