Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p030572 Quercus lobata HOM05D002857 ORTHO05D008347 1.6e-38 162.2 77 100.0
QL07p014115 Quercus lobata HOM05D002857 ORTHO05D008347 5.5e-26 120.6 54 100.0
CiPaw.06G165500 Carya illinoinensis HOM05D002857 ORTHO05D008347 9.6e-23 109.8 54 87.0
CiPaw.05G017800 Carya illinoinensis HOM05D002857 ORTHO05D008347 1.3e-22 109.4 54 88.9
Dinv15807 Davidia involucrata HOM05D002857 ORTHO05D008347 6.3e-22 107.1 53 86.8
Prupe.8G144800 Prunus persica HOM05D002857 ORTHO05D008347 8.2e-22 106.7 51 90.2
Manes.10G081600 Manihot esculenta HOM05D002857 ORTHO05D008347 2.4e-21 105.1 53 86.8
MD05G1100100 Malus domestica HOM05D002857 ORTHO05D008347 6.9e-21 103.6 54 83.3
TAR381G0590 Trochodendron aralioides HOM05D002857 ORTHO05D008347 1.5e-20 102.4 53 88.7
Eucgr.I01062 Eucalyptus grandis HOM05D002857 ORTHO05D008347 2.0e-20 102.1 54 81.5
DCAR_001699 Daucus carota HOM05D002857 ORTHO05D008347 2.6e-20 101.7 54 81.5
Cfa009507 Carpinus fangiana HOM05D002857 ORTHO05D008347 3.4e-20 101.3 53 84.9
MD05G1100400 Malus domestica HOM05D002857 ORTHO05D008347 3.4e-20 101.3 54 81.5
PGR120G0011 Punica granatum HOM05D002857 ORTHO05D008347 3.4e-20 101.3 54 81.5
Nitab4.5_0008075g0040 Nicotiana tabacum HOM05D002857 ORTHO05D008347 4.5e-20 100.9 53 79.2
PGR142G0748 Punica granatum HOM05D002857 ORTHO05D008347 4.5e-20 100.9 54 81.5
Haze_10256 Corylus avellana HOM05D002857 ORTHO05D008347 7.6e-20 100.1 53 83.0
Cfa004654 Carpinus fangiana HOM05D002857 ORTHO05D008347 1.0e-19 99.8 53 83.0
Nitab4.5_0001105g0010 Nicotiana tabacum HOM05D002857 ORTHO05D008347 1.0e-19 99.8 53 77.4
GSVIVG01037837001 Vitis vinifera HOM05D002857 ORTHO05D008347 1.0e-19 99.8 51 84.3
RcHm_v2.0_Chr6g0253801 Rosa chinensis HOM05D002857 ORTHO05D008347 1.3e-19 99.4 54 81.5
Atru.chr5.2351 Acer truncatum HOM05D002857 ORTHO05D008347 1.7e-19 99.0 51 84.3
FvH4_2g04342 Fragaria vesca HOM05D002857 ORTHO05D008347 1.7e-19 99.0 53 83.0
Peaxi162Scf00016g02839 Petunia axillaris HOM05D002857 ORTHO05D008347 1.7e-19 99.0 53 77.4
CAN.G606.59 Capsicum annuum HOM05D002857 ORTHO05D008347 2.2e-19 98.6 53 77.4
Potri.009G088200 Populus trichocarpa HOM05D002857 ORTHO05D008347 2.2e-19 98.6 54 79.6
CSS0041876 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D008347 2.9e-19 98.2 51 82.4
Ciclev10029201m.g Citrus clementina HOM05D002857 ORTHO05D008347 2.9e-19 98.2 53 79.2
Glyma.17G078200 Glycine max HOM05D002857 ORTHO05D008347 2.9e-19 98.2 51 82.4
Lj5A219T41 Lonicera japonica HOM05D002857 ORTHO05D008347 2.9e-19 98.2 74 59.5
Actinidia34361 Actinidia chinensis HOM05D002857 ORTHO05D008347 5.0e-19 97.4 53 79.2
Phvul.003G185000 Phaseolus vulgaris HOM05D002857 ORTHO05D008347 5.0e-19 97.4 51 82.4
Solyc01g107020.4 Solanum lycopersicum HOM05D002857 ORTHO05D008347 6.5e-19 97.1 53 75.5
Duzib132G1128 Durio zibethinus HOM05D002857 ORTHO05D008347 8.5e-19 96.7 54 77.8
Sopen01g049290 Solanum pennellii HOM05D002857 ORTHO05D008347 8.5e-19 96.7 53 75.5
Cc02_g19860 Coffea canephora HOM05D002857 ORTHO05D008347 1.4e-18 95.9 53 73.6
ECA234G2213 Erigeron canadensis HOM05D002857 ORTHO05D008347 1.4e-18 95.9 54 77.8
Oeu010450.1 Olea europaea HOM05D002857 ORTHO05D008347 1.4e-18 95.9 54 75.9
Sabra09G0068300 Salix brachista HOM05D002857 ORTHO05D008347 1.9e-18 95.5 54 75.9
Cfa021534 Carpinus fangiana HOM05D002857 ORTHO05D008347 2.5e-18 95.1 53 81.1
Migut.N01136 Erythranthe guttata HOM05D002857 ORTHO05D008347 3.2e-18 94.7 54 72.2
Lalb_Chr06g0165111 Lupinus albus HOM05D002857 ORTHO05D008347 3.2e-18 94.7 51 76.5
TWI14G1023 Tripterygium wilfordii HOM05D002857 ORTHO05D008347 3.2e-18 94.7 49 83.7
vmacro19465 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 3.2e-18 94.7 51 78.4
vmacro23229 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 3.2e-18 94.7 51 78.4
Cpa.g.sc106.48 Carica papaya HOM05D002857 ORTHO05D008347 4.2e-18 94.4 54 75.9
FAN24G3287 Fragaria x ananassa HOM05D001904 ORTHO05D008347 4.2e-18 94.4 53 79.2
Nn5g30580 Nelumbo nucifera HOM05D002857 ORTHO05D008347 4.2e-18 94.4 53 79.2
Gohir.D12G019900 Gossypium hirsutum HOM05D002857 ORTHO05D008347 5.5e-18 94.0 51 80.4
Gorai.008G020300 Gossypium raimondii HOM05D002857 ORTHO05D008347 5.5e-18 94.0 51 80.4
Lj4g0011899 Lotus japonicus HOM05D002857 ORTHO05D008347 5.5e-18 94.0 51 78.4
Medtr4g109520 Medicago truncatula HOM05D002857 ORTHO05D008347 5.5e-18 94.0 51 78.4
Hund00691 Selenicereus undatus HOM05D002857 ORTHO05D008347 5.5e-18 94.0 52 73.1
TPR.G2009 Trifolium pratense HOM05D002857 ORTHO05D008347 5.5e-18 94.0 51 78.4
Cfa010108 Carpinus fangiana HOM05D002857 ORTHO05D008347 7.2e-18 93.6 53 79.2
COL.COLO4_32514 Corchorus olitorius HOM05D002857 ORTHO05D007919 9.3e-18 93.2 51 78.4
Migut.O00567 Erythranthe guttata HOM05D002857 ORTHO05D008347 9.3e-18 93.2 54 70.4
HanXRQChr01g0025491 Helianthus annuus HOM05D002857 ORTHO05D008347 9.3e-18 93.2 54 75.9
Lsat_1_v5_gn_1_103341 Lactuca sativa HOM05D002857 ORTHO05D008347 9.3e-18 93.2 50 80.0
Psat0s3618g0120 Pisum sativum HOM05D002857 ORTHO05D008347 9.3e-18 93.2 51 76.5
CANSAT35G0667 Cannabis sativa HOM05D002857 ORTHO05D008347 1.2e-17 92.8 54 75.9
Ah.01g006980 Amaranthus hybridus HOM05D002857 ORTHO05D008347 1.6e-17 92.4 53 75.5
Ca_21777_v3 Cicer arietinum L. HOM05D002857 ORTHO05D008347 1.6e-17 92.4 51 76.5
Gohir.A12G019700 Gossypium hirsutum HOM05D002857 ORTHO05D008347 1.6e-17 92.4 51 78.4
Nn3g19581 Nelumbo nucifera HOM05D002857 ORTHO05D008347 4.6e-17 90.9 53 77.4
PSO675G0546 Papaver somniferum HOM05D002857 ORTHO05D008347 4.6e-17 90.9 53 75.5
Potri.001G293700 Populus trichocarpa HOM05D002857 ORTHO05D008347 4.6e-17 90.9 58 67.2
PSO541G0380 Papaver somniferum HOM05D002857 ORTHO05D008347 6.1e-17 90.5 53 73.6
Aqoxy6G02637 Aquilegia oxysepala HOM05D002857 ORTHO05D008347 7.9e-17 90.1 51 76.5
AUR62030843 Chenopodium quinoa HOM05D002857 ORTHO05D008347 1.0e-16 89.7 53 71.7
AUR62027003 Chenopodium quinoa HOM05D002857 ORTHO05D008347 1.3e-16 89.4 53 69.8
Sed0016408 Sechium edule HOM05D002857 ORTHO05D008347 1.8e-16 89.0 51 74.5
MSTRG.27764 Avicennia marina HOM05D002857 ORTHO05D008347 2.3e-16 88.6 51 72.5
unitig_749.g13509 Utricularia gibba HOM05D002857 ORTHO05D008347 3.0e-16 88.2 51 74.5
EL10Ac9g22202 Beta vulgaris HOM05D002857 ORTHO05D008347 3.9e-16 87.8 53 71.7
Thecc.02G117000 Theobroma cacao HOM05D002857 ORTHO05D008347 3.9e-16 87.8 48 75.0
SGA_v2.0_scaffold219G42527 Striga asiatica HOM05D002857 ORTHO05D008347 8.7e-16 86.7 53 67.9
CsaV3_4G000220 Cucumis sativus L. HOM05D002857 ORTHO05D008347 1.1e-15 86.3 52 69.2
Sc18g0007410 Simmondsia chinensis HOM05D002857 ORTHO05D008347 1.1e-15 86.3 52 73.1
Sc18g0007450 Simmondsia chinensis HOM05D002857 ORTHO05D008347 1.1e-15 86.3 52 73.1
HPP92_003268 Vanilla planifolia HOM05D002857 ORTHO05D008347 4.3e-15 84.3 62 61.3
Zm00001eb019030 Zea mays HOM05D002857 ORTHO05D008347 5.7e-15 84.0 73 52.1
PGSC0003DMG400025744 Solanum tuberosum HOM05D002857 ORTHO05D008347 7.4e-15 83.6 48 72.9
ClCG10G010270 Citrullus lanatus HOM05D002857 ORTHO05D008347 9.7e-15 83.2 51 68.6
MELO3C018011.2 Cucumis melo HOM05D002857 ORTHO05D008347 9.7e-15 83.2 51 68.6
SalBow3G3786 Salvia bowleyana HOM05D002857 ORTHO05D008347 1.6e-14 82.4 52 65.4
Os10g0350800 Oryza sativa ssp. japonica HOM05D002857 ORTHO05D008347 2.2e-14 82.0 51 68.6
CARHR040040 Cardamine hirsuta HOM05D002857 ORTHO05D008347 3.7e-14 81.3 73 58.9
CDE04G2041 Ceratophyllum demersum HOM05D002857 ORTHO05D008347 4.8e-14 80.9 51 68.6
VMungo1215G1881 Vigna mungo HOM05D002857 ORTHO05D008347 2.4e-13 78.6 44 77.3
Pp3c5_10320 Physcomitrium patens HOM05D002857 ORTHO05D008347 4.1e-13 77.8 52 63.5
THA.LOC104803442 Tarenaya hassleriana HOM05D002857 ORTHO05D008347 5.3e-13 77.4 50 68.0
BcaB07g33450 Brassica carinata HOM05D002857 ORTHO05D007919 9.1e-13 76.6 50 70.0
BcaC08g43176 Brassica carinata HOM05D002857 ORTHO05D007919 9.1e-13 76.6 50 70.0
A06p03450 Brassica napus HOM05D002857 ORTHO05D008347 9.1e-13 76.6 50 70.0
C06p04760 Brassica napus HOM05D002857 ORTHO05D008347 9.1e-13 76.6 50 70.0
BolC6t35606H Brassica oleracea HOM05D002857 ORTHO05D008347 9.1e-13 76.6 50 70.0
BraA06t23553Z Brassica rapa HOM05D002857 ORTHO05D008347 9.1e-13 76.6 50 70.0
Thhalv10011799m.g Eutrema salsugineum HOM05D002857 ORTHO05D008347 9.1e-13 76.6 50 70.0
Rhsim11G0151500 Rhododendron simsii HOM05D002133 ORTHO05D008347 9.1e-13 76.6 46 71.7
Rhsim11G0152900 Rhododendron simsii HOM05D002133 ORTHO05D008347 9.1e-13 76.6 46 71.7
SpUn0137_0020 Schrenkiella parvula HOM05D002857 ORTHO05D008347 9.1e-13 76.6 50 70.0
Carub.0001s3918 Capsella rubella HOM05D002857 ORTHO05D008347 2.0e-12 75.5 50 68.0
AL1G57550 Arabidopsis lyrata HOM05D002857 ORTHO05D008347 3.4e-12 74.7 46 71.7
Rhsim11G0151300 Rhododendron simsii HOM05D002133 ORTHO05D002256 3.4e-12 74.7 46 69.6
AagrBONN_evm.TU.Sc2ySwM_228.4585 Anthoceros agrestis HOM05D002857 ORTHO05D008347 5.9e-12 73.9 75 44.0
Aa31LG10G4120 Aethionema arabicum HOM05D002857 ORTHO05D008347 7.7e-12 73.6 50 66.0
SMO361G0227 Selaginella moellendorffii HOM05D002857 ORTHO05D008347 1.3e-11 72.8 50 60.0
Mapoly0121s0028 Marchantia polymorpha HOM05D002857 ORTHO05D008347 1.6e-09 65.9 53 50.9
Ciclev10007042m.g Citrus clementina HOM05D002857 ORTHO05D008347 7.9e-09 63.5 38 73.7
MCO12G139 Micromonas commoda HOM05D002857 ORTHO05D008347 1.0e-08 63.2 47 59.6
CBR_g3894 Chara braunii HOM05D002857 ORTHO05D008347 1.4e-08 62.8 51 54.9
Cre05.g247150 Chlamydomonas reinhardtii HOM05D002857 ORTHO05D008347 1.1e-07 59.7 46 54.3


User provided reference genes

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