Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 1.4e-32 142.5 78 100.0
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 3.5e-20 101.3 60 93.3
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 1.0e-19 99.8 60 91.7
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 1.3e-19 99.4 60 90.0
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.3e-19 99.4 60 91.7
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 2.3e-19 98.6 61 91.8
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 2.9e-19 98.2 60 88.3
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 2.9e-19 98.2 60 88.3
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 2.9e-19 98.2 60 90.0
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 3.8e-19 97.8 60 90.0
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 6.6e-19 97.1 78 74.4
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 6.6e-19 97.1 61 90.2
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 8.6e-19 96.7 61 90.2
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 8.6e-19 96.7 60 90.0
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 8.6e-19 96.7 60 90.0
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.1e-18 96.3 60 85.0
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 1.5e-18 95.9 61 86.9
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.5e-18 95.9 60 86.7
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.9e-18 95.5 61 88.5
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 2.5e-18 95.1 60 88.3
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 3.3e-18 94.7 62 87.1
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 3.3e-18 94.7 61 88.5
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 3.3e-18 94.7 72 75.0
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 3.3e-18 94.7 60 86.7
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 4.2e-18 94.4 60 86.7
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 4.2e-18 94.4 62 82.3
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 5.5e-18 94.0 63 85.7
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 5.5e-18 94.0 63 85.7
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 5.5e-18 94.0 59 84.7
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 7.2e-18 93.6 62 87.1
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 7.2e-18 93.6 62 87.1
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 7.2e-18 93.6 61 86.9
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 7.2e-18 93.6 60 86.7
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 7.2e-18 93.6 64 82.8
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 7.2e-18 93.6 64 82.8
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 9.5e-18 93.2 62 85.5
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 9.5e-18 93.2 60 85.0
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 9.5e-18 93.2 61 88.5
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 9.5e-18 93.2 62 79.0
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 1.2e-17 92.8 60 83.3
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 1.2e-17 92.8 62 85.5
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.6e-17 92.4 62 85.5
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.6e-17 92.4 63 85.7
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 2.1e-17 92.0 61 85.2
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 2.8e-17 91.7 60 85.0
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 3.6e-17 91.3 62 85.5
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 3.6e-17 91.3 60 83.3
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 3.6e-17 91.3 62 85.5
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 4.7e-17 90.9 61 85.2
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 4.7e-17 90.9 62 85.5
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 4.7e-17 90.9 60 83.3
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 6.1e-17 90.5 61 85.2
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 8.0e-17 90.1 63 76.2
Actinidia34354 Actinidia chinensis HOM05D001568 ORTHO05D004404 1.0e-16 89.7 67 76.1
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 1.0e-16 89.7 67 77.6
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 1.0e-16 89.7 67 77.6
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 1.4e-16 89.4 61 80.3
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 2.3e-16 88.6 63 84.1
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 2.3e-16 88.6 59 79.7
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 3.0e-16 88.2 62 83.9
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 3.0e-16 88.2 62 83.9
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 5.2e-16 87.4 61 83.6
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 1.2e-15 86.3 58 82.8
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 1.5e-15 85.9 65 83.1
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 2.0e-15 85.5 60 76.7
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 2.6e-15 85.1 64 76.6
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 2.6e-15 85.1 62 83.9
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 4.4e-15 84.3 68 72.1
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 1.3e-14 82.8 59 81.4
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 1.7e-14 82.4 62 75.8
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 2.2e-14 82.0 64 73.4
AUR62030863 Chenopodium quinoa HOM05D001568 ORTHO05D004404 2.9e-14 81.6 65 76.9
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 2.9e-14 81.6 62 74.2
AL3G33100 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 4.9e-14 80.9 60 73.3
Carub.0003s1953 Capsella rubella HOM05D001568 ORTHO05D004404 6.3e-14 80.5 60 73.3
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 6.3e-14 80.5 59 79.7
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 8.3e-14 80.1 58 82.8
Sc08g0004350 Simmondsia chinensis HOM05D001568 ORTHO05D004404 1.1e-13 79.7 74 71.6
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 4.1e-13 77.8 61 75.4
AT3G19660 Arabidopsis thaliana HOM05D001568 ORTHO05D004404 4.1e-13 77.8 60 71.7
Aa31LG8G6440 Aethionema arabicum HOM05D001568 ORTHO05D004404 5.4e-13 77.4 61 72.1
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 5.4e-13 77.4 59 76.3
THA.LOC104803443 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 2.0e-12 75.5 65 70.8
CARHR095120 Cardamine hirsuta HOM05D001568 ORTHO05D004404 2.7e-12 75.1 60 68.3
A05p29940 Brassica napus HOM05D001568 ORTHO05D004404 3.5e-12 74.7 62 71.0
BraA05t21839Z Brassica rapa HOM05D001568 ORTHO05D004404 3.5e-12 74.7 62 71.0
BcaC05g28437 Brassica carinata HOM05D001568 ORTHO05D004404 4.6e-12 74.3 62 71.0
A01p35050 Brassica napus HOM05D001568 ORTHO05D004404 4.6e-12 74.3 62 66.1
C05p45170 Brassica napus HOM05D001568 ORTHO05D004404 4.6e-12 74.3 62 71.0
BolC5t33243H Brassica oleracea HOM05D001568 ORTHO05D004404 4.6e-12 74.3 62 71.0
BraA01t03586Z Brassica rapa HOM05D001568 ORTHO05D004404 4.6e-12 74.3 62 66.1
BcaB06g26036 Brassica carinata HOM05D001568 ORTHO05D004404 5.9e-12 73.9 62 69.4
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 7.8e-12 73.6 55 80.0
Aqoxy1G00264 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 1.0e-11 73.2 57 68.4
Aqoxy335s003 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 1.0e-11 73.2 57 68.4
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 2.3e-11 72.0 52 82.7
EL10Ac9g22181 Beta vulgaris HOM05D001568 ORTHO05D004404 1.5e-10 69.3 57 73.7
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 1.9e-10 68.9 59 66.1
Nitab4.5_0010145g0040 Nicotiana tabacum HOM05D001568 ORTHO05D004404 2.1e-09 65.5 44 84.1
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 2.1e-09 65.5 59 62.7
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 3.6e-09 64.7 59 64.4
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 6.2e-09 63.9 59 59.3
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 6.2e-09 63.9 59 59.3
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 8.0e-09 63.5 59 62.7
EL10Ac9g22180 Beta vulgaris HOM05D001568 ORTHO05D004404 1.0e-08 63.2 73 58.9
Lalb_Chr02g0144911 Lupinus albus HOM05D001568 ORTHO05D004404 1.0e-08 63.2 57 64.9
VMungo1215G2526 Vigna mungo HOM05D001946 ORTHO05D002111 1.0e-08 63.2 62 64.5
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 1.4e-08 62.8 54 66.7
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 2.3e-08 62.0 61 62.3
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 2.3e-08 62.0 58 62.1
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 2.3e-08 62.0 54 66.7
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 3.1e-08 61.6 66 56.1
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 3.1e-08 61.6 59 59.3
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 5.2e-08 60.8 57 61.4
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 5.2e-08 60.8 59 61.0
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 6.8e-08 60.5 59 59.3
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 6.8e-08 60.5 58 62.1
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 6.8e-08 60.5 54 63.0
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 1.2e-07 59.7 62 56.5
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.2e-07 59.7 59 59.3
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.5e-07 59.3 65 55.4
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 2.0e-07 58.9 54 61.1
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 2.6e-07 58.5 54 61.1
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 3.4e-07 58.2 55 61.8
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 3.4e-07 58.2 59 57.6
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 3.4e-07 58.2 54 57.4
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 4.4e-07 57.8 55 61.8
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 7.5e-07 57.0 62 56.5
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 7.5e-07 57.0 62 56.5
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 9.8e-07 56.6 52 63.5
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 9.8e-07 56.6 55 61.8
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 9.8e-07 56.6 52 63.5
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 1.3e-06 56.2 61 57.4
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 1.7e-06 55.8 59 55.9
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 1.7e-06 55.8 59 55.9
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 3.7e-06 54.7 62 54.8
Potri.004G105900 Populus trichocarpa HOM05D001568 ORTHO05D004404 3.7e-06 54.7 59 55.9
AUR62030864 Chenopodium quinoa HOM05D001568 ORTHO05D004404 4.9e-06 54.3 69 53.6
Oeu032864.1 Olea europaea HOM05D001568 ORTHO05D004404 4.9e-06 54.3 60 53.3
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 6.4e-06 53.9 53 54.7
Cc07_g04900 Coffea canephora HOM05D001568 ORTHO05D004404 6.4e-06 53.9 54 55.6
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 6.4e-06 53.9 54 59.3
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 6.4e-06 53.9 53 54.7
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 6.4e-06 53.9 53 54.7
Gohir.D07G077600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 8.3e-06 53.5 61 57.4
Gorai.001G082100 Gossypium raimondii HOM05D001568 ORTHO05D004404 8.3e-06 53.5 61 57.4
PGSC0003DMG400019661 Solanum tuberosum HOM05D001568 ORTHO05D004404 8.3e-06 53.5 62 51.6


User provided reference genes

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