Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p029345 Quercus lobata HOM05D006874 ORTHO05D008334 2.0e-217 758.8 381 100.0
Haze_10303 Corylus avellana HOM05D006874 ORTHO05D008334 1.4e-106 390.6 352 61.6
Cfa004701 Carpinus fangiana HOM05D006874 ORTHO05D008334 2.4e-106 389.8 359 61.0
CiPaw.06G164000 Carya illinoinensis HOM05D006874 ORTHO05D008334 5.9e-73 278.9 366 50.3
TAR628G0654 Trochodendron aralioides HOM05D006874 ORTHO05D008334 2.6e-44 183.7 379 37.5
Potri.009G085500 Populus trichocarpa HOM05D006874 ORTHO05D008334 5.8e-36 156.0 356 34.0
Potri.001G290000 Populus trichocarpa HOM05D006874 ORTHO05D008334 2.7e-33 147.1 358 33.0
Nn5g30659 Nelumbo nucifera HOM05D006874 ORTHO05D008334 7.3e-31 139.0 376 33.5
Manes.18G049200 Manihot esculenta HOM05D006874 ORTHO05D008334 9.0e-29 132.1 365 30.4
Sabra16G0181500 Salix brachista HOM05D006874 ORTHO05D008334 1.5e-28 131.3 359 31.8
Thecc.02G119800 Theobroma cacao HOM05D016697 ORTHO05D018163 3.4e-28 130.2 366 32.2
Dinv09539 Davidia involucrata HOM05D006874 ORTHO05D008334 3.8e-27 126.7 360 32.8
Nn6g34522 Nelumbo nucifera HOM05D006874 ORTHO05D008334 6.4e-27 125.9 376 31.4
Sabra14G0008000 Salix brachista HOM05D006874 ORTHO05D008334 6.4e-27 125.9 364 29.4
QL12p038579 Quercus lobata HOM05D006874 ORTHO05D008334 3.2e-26 123.6 372 28.8
Potri.002G115600 Populus trichocarpa HOM05D006874 ORTHO05D008334 9.3e-26 122.1 365 29.9
Potri.014G013200 Populus trichocarpa HOM05D006874 ORTHO05D008334 1.8e-24 117.9 369 31.7
Cfa013741 Carpinus fangiana HOM05D006874 ORTHO05D008334 2.3e-24 117.5 359 28.7
Actinidia19297 Actinidia chinensis HOM05D006874 ORTHO05D008334 1.9e-23 114.4 364 28.0
MBI16_g45151_MAGBIO Magnolia biondii HOM05D006874 ORTHO05D008334 4.3e-23 113.2 369 30.9
Manes.05G183400 Manihot esculenta HOM05D006874 ORTHO05D008334 5.6e-23 112.8 365 28.2
Manes.07G056800 Manihot esculenta HOM05D006874 ORTHO05D008334 7.4e-23 112.5 354 30.8
Dinv39206 Davidia involucrata HOM05D006874 ORTHO05D008334 9.6e-23 112.1 364 30.5
Cpa.g.sc91.58 Carica papaya HOM05D016697 ORTHO05D018163 1.6e-22 111.3 369 27.6
Duzib116G0206 Durio zibethinus HOM05D006874 ORTHO05D008334 2.1e-22 110.9 362 29.8
Duzib093G1642 Durio zibethinus HOM05D006874 ORTHO05D008334 9.0e-21 105.5 371 30.2
TAR625G1551 Trochodendron aralioides HOM05D006874 ORTHO05D008334 2.0e-20 104.4 132 43.2
Aqoxy6G02484 Aquilegia oxysepala HOM05D006874 ORTHO05D008334 1.3e-19 101.7 391 27.6
Lj2g0008576 Lotus japonicus HOM05D023496 ORTHO05D025628 1.7e-19 101.3 371 29.4
Sabra02G0091300 Salix brachista HOM05D006874 ORTHO05D008334 2.2e-19 100.9 356 29.5
MSTRG.24387 Avicennia marina HOM05D006874 ORTHO05D008334 4.9e-19 99.8 357 26.6
Prupe.1G419500 Prunus persica HOM05D006874 ORTHO05D008334 6.5e-19 99.4 359 29.8
COL.COLO4_32486 Corchorus olitorius HOM05D016697 ORTHO05D018163 8.4e-19 99.0 363 30.9
VMungo1215G3202 Vigna mungo HOM05D023496 ORTHO05D025628 2.5e-18 97.4 357 28.9
CSS0047478 Camellia sinensis var. sinensis HOM05D006874 ORTHO05D008334 9.3e-18 95.5 366 28.7
PSO541G5864 Papaver somniferum HOM05D006874 ORTHO05D008334 9.3e-18 95.5 387 26.4
Dinv16069 Davidia involucrata HOM05D006874 ORTHO05D008334 1.2e-17 95.1 364 26.9
MD08G1078600 Malus domestica HOM05D006874 ORTHO05D008334 3.5e-17 93.6 382 30.6
Haze_22393 Corylus avellana HOM05D006874 ORTHO05D008334 1.0e-16 92.0 363 26.2
Haze_22401 Corylus avellana HOM05D006874 ORTHO05D008334 1.0e-16 92.0 363 26.2
Actinidia10219 Actinidia chinensis HOM05D006874 ORTHO05D008334 2.3e-16 90.9 358 28.8
Thecc.08G084900 Theobroma cacao HOM05D006874 ORTHO05D008334 3.0e-16 90.5 364 28.8
CSS0007120 Camellia sinensis var. sinensis HOM05D006874 ORTHO05D008334 3.9e-16 90.1 363 28.4
Oeu053642.1 Olea europaea HOM05D006874 ORTHO05D008334 5.1e-16 89.7 354 25.7
Ciclev10016010m.g Citrus clementina HOM05D006874 ORTHO05D008334 6.7e-16 89.4 360 27.2
Actinidia00356 Actinidia chinensis HOM05D006874 ORTHO05D008334 1.1e-15 88.6 195 31.8
Gohir.A05G211900 Gossypium hirsutum HOM05D006874 ORTHO05D008334 3.3e-15 87.0 362 27.6
Nitab4.5_0001426g0040 Nicotiana tabacum HOM05D006874 ORTHO05D008334 3.3e-15 87.0 358 28.5
PGR031G0049 Punica granatum HOM05D006874 ORTHO05D008334 4.3e-15 86.7 362 27.1
RcHm_v2.0_Chr6g0309981 Rosa chinensis HOM05D006874 ORTHO05D008334 4.3e-15 86.7 359 27.3
Gohir.D05G215200 Gossypium hirsutum HOM05D006874 ORTHO05D008334 7.4e-15 85.9 361 26.0
Gohir.A13G047850 Gossypium hirsutum HOM05D016697 ORTHO05D018163 9.6e-15 85.5 366 27.0
PSO675G5853 Papaver somniferum HOM05D006874 ORTHO05D008334 1.6e-14 84.7 403 26.8
EL10Ac1g02352 Beta vulgaris HOM05D006874 ORTHO05D008334 4.8e-14 83.2 387 26.6
AUR62037457 Chenopodium quinoa HOM05D006874 ORTHO05D008334 4.8e-14 83.2 377 25.5
TWI56G0226 Tripterygium wilfordii HOM05D006874 ORTHO05D008334 1.1e-13 82.0 360 28.9
Gorai.009G221900 Gossypium raimondii HOM05D006874 ORTHO05D008334 1.8e-13 81.3 364 26.1
Glyma.11G002500 Glycine max HOM05D023496 ORTHO05D025628 2.4e-13 80.9 362 26.8
Rhsim06G0064400 Rhododendron simsii HOM05D006874 ORTHO05D008334 2.4e-13 80.9 360 28.1
FAN15G0895 Fragaria x ananassa HOM05D006874 ORTHO05D008334 3.1e-13 80.5 362 27.1
Gorai.013G051900 Gossypium raimondii HOM05D016697 ORTHO05D018163 4.1e-13 80.1 365 26.8
Lalb_Chr23g0267621 Lupinus albus HOM05D006874 ORTHO05D008334 5.3e-13 79.7 364 26.6
vmacro21419 Vaccinium macrocarpon HOM05D006874 ORTHO05D008334 5.3e-13 79.7 357 26.9
Eucgr.F02227 Eucalyptus grandis HOM05D006874 ORTHO05D008334 6.9e-13 79.3 369 25.7
Gohir.D13G046200 Gossypium hirsutum HOM05D016697 ORTHO05D018163 9.0e-13 79.0 365 26.8
Atru.chr5.2294 Acer truncatum HOM05D016697 ORTHO05D018163 1.5e-12 78.2 195 33.3
MELO3C016836.2 Cucumis melo HOM05D006874 ORTHO05D008334 5.8e-12 76.3 382 28.3
CsaV3_4G035240 Cucumis sativus L. HOM05D006874 ORTHO05D008334 1.0e-11 75.5 375 29.1
Glyma.17G233100 Glycine max HOM05D006874 ORTHO05D008334 2.2e-11 74.3 364 24.2
MBI16_g41242_MAGBIO Magnolia biondii HOM05D006874 ORTHO05D008334 2.2e-11 74.3 240 28.8
Nitab4.5_0002796g0010 Nicotiana tabacum HOM05D006874 ORTHO05D008334 2.2e-11 74.3 353 26.9
FAN27G0759 Fragaria x ananassa HOM05D006874 ORTHO05D008334 3.8e-11 73.6 371 25.6
Atru.chr13.867 Acer truncatum HOM05D006874 ORTHO05D008334 5.0e-11 73.2 297 29.0
TAR376G0413 Trochodendron aralioides HOM05D006874 ORTHO05D008334 8.4e-11 72.4 162 36.4
AUR62035010 Chenopodium quinoa HOM05D006874 ORTHO05D008334 1.1e-10 72.0 374 25.1
Ciclev10030239m.g Citrus clementina HOM05D006874 ORTHO05D008334 1.1e-10 72.0 96 41.7
Ca_15889_v3 Cicer arietinum L. HOM05D006874 ORTHO05D008334 1.4e-10 71.6 372 23.4
MD15G1065400 Malus domestica HOM05D006874 ORTHO05D008334 1.4e-10 71.6 182 28.6
Sc15g0005390 Simmondsia chinensis HOM05D006874 ORTHO05D008334 1.9e-10 71.2 357 26.1
Cpa.g.sc524.2 Carica papaya HOM05D006874 ORTHO05D008334 2.5e-10 70.9 358 26.8
Glyma.06G048600 Glycine max HOM05D006874 ORTHO05D008334 2.5e-10 70.9 375 22.9
FAN20G1691 Fragaria x ananassa HOM05D006874 ORTHO05D008334 3.2e-10 70.5 369 25.2
CANSAT25G0531 Cannabis sativa HOM05D006874 ORTHO05D008334 1.6e-09 68.2 359 22.3
ClCG05G026570 Citrullus lanatus HOM05D006874 ORTHO05D008334 3.5e-09 67.0 357 25.8
FvH4_2g32690 Fragaria vesca HOM05D006874 ORTHO05D008334 3.5e-09 67.0 366 25.7
Solyc04g077535.1 Solanum lycopersicum HOM05D006874 ORTHO05D008334 3.5e-09 67.0 357 27.2
Psat5g037000 Pisum sativum HOM05D006874 ORTHO05D008334 4.6e-09 66.6 371 25.6
MSTRG.25026 Avicennia marina HOM05D006874 ORTHO05D008334 6.1e-09 66.2 196 28.1
CSS0036555 Camellia sinensis var. sinensis HOM05D006874 ORTHO05D008334 7.9e-09 65.9 103 35.9
Glyma.14G089075 Glycine max HOM05D006874 ORTHO05D008334 7.9e-09 65.9 363 23.7
RhsimUnG0041100 Rhododendron simsii HOM05D063883 ORTHO05D008334 1.3e-08 65.1 366 25.1
RhsimUnG0123100 Rhododendron simsii HOM05D063883 ORTHO05D008334 1.3e-08 65.1 366 25.1
Hund05278 Selenicereus undatus HOM05D006874 ORTHO05D008334 2.3e-08 64.3 383 26.6
Phvul.002G050800 Phaseolus vulgaris HOM05D023496 ORTHO05D025628 3.0e-08 63.9 366 24.6
Migut.C00474 Erythranthe guttata HOM05D006874 ORTHO05D008334 3.9e-08 63.5 362 24.0
Ciclev10029832m.g Citrus clementina HOM05D016697 ORTHO05D018163 5.1e-08 63.2 124 37.1
Medtr3g103400 Medicago truncatula HOM05D006874 ORTHO05D008334 6.7e-08 62.8 377 22.3
VMungo1309G0435 Vigna mungo HOM05D006874 ORTHO05D008334 6.7e-08 62.8 368 25.8
Cc10_g07600 Coffea canephora HOM05D006874 ORTHO05D008334 8.7e-08 62.4 352 23.6
Gohir.D06G022500 Gossypium hirsutum HOM05D006874 ORTHO05D008334 1.9e-07 61.2 357 25.2
Gorai.010G027100 Gossypium raimondii HOM05D006874 ORTHO05D008334 1.9e-07 61.2 357 25.2
CiPaw.07G172200 Carya illinoinensis HOM05D006874 ORTHO05D008334 2.5e-07 60.8 359 22.8
Gohir.A06G025400 Gossypium hirsutum HOM05D006874 ORTHO05D008334 7.4e-07 59.3 357 24.9
Hma1.2p1_1170F.1_g263450 Hydrangea macrophylla HOM05D006874 ORTHO05D008334 1.3e-06 58.5 103 35.9
Sed0017147 Sechium edule HOM05D006874 ORTHO05D008334 1.3e-06 58.5 370 24.6
Psat0s1031g0080 Pisum sativum HOM05D006874 ORTHO05D008334 1.6e-06 58.2 374 25.9
PGSC0003DMG400004918 Solanum tuberosum HOM05D006874 ORTHO05D008334 1.6e-06 58.2 357 26.3
ATR0739G189 Amborella trichopoda HOM05D006874 ORTHO05D008334 2.2e-06 57.8 379 24.8


User provided reference genes

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