Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p029270 Quercus lobata HOM05D006153 ORTHO05D007701 4.0e-62 241.1 111 100.0
Haze_10289 Corylus avellana HOM05D006153 ORTHO05D007701 4.9e-28 127.9 110 51.8
Haze_10299 Corylus avellana HOM05D006153 ORTHO05D007701 7.1e-27 124.0 94 64.9
Cfa004694 Carpinus fangiana HOM05D006153 ORTHO05D007701 2.7e-26 122.1 112 55.4
Duzib052G0610 Durio zibethinus HOM05D006153 ORTHO05D007701 4.3e-24 114.8 113 54.9
CiPaw.05G015200 Carya illinoinensis HOM05D006153 ORTHO05D007701 6.9e-22 107.5 99 60.6
Cpa.g.sc200.7 Carica papaya HOM05D006153 ORTHO05D007701 9.0e-22 107.1 104 54.8
Gohir.D13G044400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 5.8e-21 104.4 109 49.5
Gorai.013G049200 Gossypium raimondii HOM05D006153 ORTHO05D007701 5.8e-21 104.4 109 49.5
Duzib132G0541 Durio zibethinus HOM05D006153 ORTHO05D007701 1.0e-20 103.6 98 53.1
Gohir.A01G008400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 1.0e-20 103.6 103 53.4
Gorai.002G009800 Gossypium raimondii HOM05D006153 ORTHO05D007701 1.0e-20 103.6 103 53.4
Prupe.8G140400 Prunus persica HOM05D006153 ORTHO05D007701 1.0e-20 103.6 116 54.3
Manes.07G064400 Manihot esculenta HOM05D006153 ORTHO05D007701 3.8e-20 101.7 118 47.5
Glyma.20G131700 Glycine max HOM05D006153 ORTHO05D007701 1.9e-19 99.4 99 49.5
QL11p031990 Quercus lobata HOM05D006153 ORTHO05D007701 1.9e-19 99.4 94 50.0
Potri.001G296900 Populus trichocarpa HOM05D006153 ORTHO05D007701 4.2e-19 98.2 111 49.5
GSVIVG01037873001 Vitis vinifera HOM05D006153 ORTHO05D007701 4.2e-19 98.2 100 53.0
Glyma.10G259200 Glycine max HOM05D006153 ORTHO05D007701 7.1e-19 97.4 101 47.5
Sabra16G0186000 Salix brachista HOM05D006153 ORTHO05D007701 1.2e-18 96.7 99 50.5
Haze_10254 Corylus avellana HOM05D006153 ORTHO05D007701 2.7e-18 95.5 102 52.9
Phvul.007G043000 Phaseolus vulgaris HOM05D006153 ORTHO05D007701 3.5e-18 95.1 103 49.5
Dinv15786 Davidia involucrata HOM05D006153 ORTHO05D007701 6.0e-18 94.4 122 42.6
Sc14g0002580 Simmondsia chinensis HOM05D006153 ORTHO05D007701 6.0e-18 94.4 100 47.0
Actinidia34374 Actinidia chinensis HOM05D006153 ORTHO05D007701 1.0e-17 93.6 111 45.9
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 1.0e-17 93.6 90 52.2
Thecc.02G113400 Theobroma cacao HOM05D006153 ORTHO05D007701 1.0e-17 93.6 113 47.8
GSVIVG01037871001 Vitis vinifera HOM05D006153 ORTHO05D007701 1.0e-17 93.6 100 51.0
Potri.009G091100 Populus trichocarpa HOM05D006153 ORTHO05D007701 2.3e-17 92.4 105 49.5
TAR381G0917 Trochodendron aralioides HOM05D006153 ORTHO05D007701 2.3e-17 92.4 71 54.9
VMungo0720G0345 Vigna mungo HOM05D006153 ORTHO05D007701 2.3e-17 92.4 97 50.5
Manes.10G074900 Manihot esculenta HOM05D006153 ORTHO05D007701 3.0e-17 92.0 118 47.5
PGR042G3678 Punica granatum HOM05D006153 ORTHO05D007701 6.7e-17 90.9 106 45.3
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 1.1e-16 90.1 98 42.9
Sabra09G0070400 Salix brachista HOM05D006153 ORTHO05D007701 1.9e-16 89.4 93 49.5
GSVIVG01037872001 Vitis vinifera HOM05D006153 ORTHO05D007701 1.9e-16 89.4 100 49.0
CSS0010428 Camellia sinensis var. sinensis HOM05D006153 ORTHO05D007701 3.3e-16 88.6 121 42.1
MD05G1096000 Malus domestica HOM05D006153 ORTHO05D007701 7.4e-16 87.4 130 47.7
Dinv42217 Davidia involucrata HOM05D006153 ORTHO05D007701 9.7e-16 87.0 101 44.6
COL.COLO4_32545 Corchorus olitorius HOM05D006153 ORTHO05D007701 2.2e-15 85.9 102 48.0
Hma1.2p1_1174F.1_g263880 Hydrangea macrophylla HOM05D006153 ORTHO05D007701 4.8e-15 84.7 97 42.3
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 4.8e-15 84.7 100 46.0
Lalb_Chr06g0165291 Lupinus albus HOM05D006153 ORTHO05D007701 4.8e-15 84.7 95 48.4
Eucgr.G00438 Eucalyptus grandis HOM05D006153 ORTHO05D007701 6.3e-15 84.3 93 47.3
FvH4_2g04480 Fragaria vesca HOM05D006153 ORTHO05D007701 6.3e-15 84.3 114 48.2
FAN24G1230 Fragaria x ananassa HOM05D006153 ORTHO05D007701 6.3e-15 84.3 114 48.2
RcHm_v2.0_Chr6g0253971 Rosa chinensis HOM05D006153 ORTHO05D007701 8.2e-15 84.0 114 49.1
FAN15G1936 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.1e-14 83.6 115 51.3
FAN20G1027 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.1e-14 83.6 114 48.2
MD10G1102200 Malus domestica HOM05D006153 ORTHO05D007701 1.1e-14 83.6 61 62.3
FAN27G0726 Fragaria x ananassa HOM05D006153 ORTHO05D007701 2.4e-14 82.4 114 47.4
Nn5g30510 Nelumbo nucifera HOM05D006153 ORTHO05D007701 2.4e-14 82.4 91 47.3
Actinidia27982 Actinidia chinensis HOM05D006153 ORTHO05D007701 6.9e-14 80.9 104 49.0
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 6.9e-14 80.9 98 45.9
Peaxi162Scf00016g00267 Petunia axillaris HOM05D006153 ORTHO05D007701 6.9e-14 80.9 47 72.3
Hund06709 Selenicereus undatus HOM05D006153 ORTHO05D007701 6.9e-14 80.9 57 63.2
AUR62027357 Chenopodium quinoa HOM05D006153 ORTHO05D007701 1.5e-13 79.7 59 54.2
Nitab4.5_0002017g0030 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.5e-13 79.7 52 61.5
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 2.6e-13 79.0 52 61.5
Peaxi162Scf00003g00261 Petunia axillaris HOM05D006153 ORTHO05D007701 2.6e-13 79.0 82 43.9
AL3G32960 Arabidopsis lyrata HOM05D006153 ORTHO05D007701 3.4e-13 78.6 52 67.3
Gohir.A13G045400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 4.5e-13 78.2 78 55.1
Nitab4.5_0001105g0220 Nicotiana tabacum HOM05D006153 ORTHO05D007701 4.5e-13 78.2 52 65.4
Nitab4.5_0004685g0060 Nicotiana tabacum HOM05D006153 ORTHO05D007701 4.5e-13 78.2 52 65.4
Sp3g17600 Schrenkiella parvula HOM05D006153 ORTHO05D007701 4.5e-13 78.2 116 43.1
Cfa004655 Carpinus fangiana HOM05D006153 ORTHO05D007701 7.6e-13 77.4 87 49.4
PSO541G5112 Papaver somniferum HOM05D006153 ORTHO05D007701 7.6e-13 77.4 51 58.8
TWI23G0900 Tripterygium wilfordii HOM05D006153 ORTHO05D007701 7.6e-13 77.4 95 46.3
CANSAT25G0942 Cannabis sativa HOM05D006153 ORTHO05D007701 1.3e-12 76.6 74 51.4
CARHR094970 Cardamine hirsuta HOM05D006153 ORTHO05D007701 1.3e-12 76.6 52 65.4
Oeu013772.1 Olea europaea HOM05D006153 ORTHO05D007701 1.3e-12 76.6 87 36.8
BcaC09g48920 Brassica carinata HOM05D006153 ORTHO05D007701 1.7e-12 76.3 47 68.1
C01p44580 Brassica napus HOM05D006153 ORTHO05D007701 1.7e-12 76.3 47 68.1
Carub.0003s1938 Capsella rubella HOM05D006153 ORTHO05D007701 1.7e-12 76.3 55 61.8
Solyc01g107280.3 Solanum lycopersicum HOM05D006153 ORTHO05D007701 1.7e-12 76.3 49 65.3
Sopen01g049530 Solanum pennellii HOM05D006153 ORTHO05D007701 1.7e-12 76.3 49 65.3
A01p35130 Brassica napus HOM05D006153 ORTHO05D007701 2.2e-12 75.9 52 65.4
BraA01t03595Z Brassica rapa HOM05D006153 ORTHO05D007701 2.2e-12 75.9 52 65.4
Thhalv10021914m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 2.2e-12 75.9 52 63.5
Peaxi162Scf00152g00320 Petunia axillaris HOM05D006153 ORTHO05D007701 2.2e-12 75.9 91 42.9
Aa31LG8G6290 Aethionema arabicum HOM05D006153 ORTHO05D007701 2.9e-12 75.5 67 52.2
AT3G19550 Arabidopsis thaliana HOM05D006153 ORTHO05D007701 2.9e-12 75.5 118 42.4
SGA_v2.0_scaffold624G53237 Striga asiatica HOM05D006153 ORTHO05D007701 2.9e-12 75.5 50 66.0
BcaC05g28465 Brassica carinata HOM05D006153 ORTHO05D007701 3.8e-12 75.1 59 55.9
A01p35140 Brassica napus HOM05D006153 ORTHO05D007701 3.8e-12 75.1 51 64.7
A05p30090 Brassica napus HOM05D006153 ORTHO05D007701 3.8e-12 75.1 59 55.9
C05p45510 Brassica napus HOM05D006153 ORTHO05D007701 3.8e-12 75.1 59 55.9
BolC5t33274H Brassica oleracea HOM05D006153 ORTHO05D007701 3.8e-12 75.1 59 55.9
BraA01t03596Z Brassica rapa HOM05D006153 ORTHO05D007701 3.8e-12 75.1 51 64.7
BraA05t21849Z Brassica rapa HOM05D006153 ORTHO05D007701 3.8e-12 75.1 59 55.9
BcaB04g20696 Brassica carinata HOM05D006153 ORTHO05D007701 5.0e-12 74.7 115 41.7
MELO3C018509.2 Cucumis melo HOM05D006153 ORTHO05D007701 5.0e-12 74.7 55 60.0
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 5.0e-12 74.7 51 60.8
BolC1t04422H Brassica oleracea HOM05D006153 ORTHO05D007701 6.5e-12 74.3 47 66.0
DCAR_001679 Daucus carota HOM05D006153 ORTHO05D007701 6.5e-12 74.3 50 62.0
Migut.I00275 Erythranthe guttata HOM05D006153 ORTHO05D007701 6.5e-12 74.3 42 69.0
ClCG02G006680 Citrullus lanatus HOM05D006153 ORTHO05D007701 8.5e-12 73.9 112 39.3
HanXRQChr16g0514451 Helianthus annuus HOM05D006153 ORTHO05D007701 8.5e-12 73.9 41 68.3
BcaB04g20697 Brassica carinata HOM05D006153 ORTHO05D007701 1.1e-11 73.6 45 68.9
HanXRQChr16g0514461 Helianthus annuus HOM05D006153 ORTHO05D007701 1.1e-11 73.6 107 38.3
Lj1g0020403 Lotus japonicus HOM05D006153 ORTHO05D007701 1.4e-11 73.2 102 39.2
AUR62031329 Chenopodium quinoa HOM05D006153 ORTHO05D007701 1.9e-11 72.8 46 60.9
BcaB06g26014 Brassica carinata HOM05D006153 ORTHO05D007701 2.5e-11 72.4 52 57.7
Os12g0507700 Oryza sativa ssp. japonica HOM05D006153 ORTHO05D007701 2.5e-11 72.4 66 51.5
EL10Ac8g19360 Beta vulgaris HOM05D006153 ORTHO05D007701 3.2e-11 72.0 71 47.9
MBI16_g15146_MAGBIO Magnolia biondii HOM05D006153 ORTHO05D007701 3.2e-11 72.0 103 41.7
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 4.2e-11 71.6 44 61.4
PGSC0003DMG400025850 Solanum tuberosum HOM05D006153 ORTHO05D007701 5.5e-11 71.2 49 61.2
Psat4g228040 Pisum sativum HOM05D006153 ORTHO05D007701 7.2e-11 70.9 89 46.1
Rhsim05G0089900 Rhododendron simsii HOM05D006153 ORTHO05D007701 7.2e-11 70.9 43 67.4
CsaV3_7G007950 Cucumis sativus L. HOM05D006153 ORTHO05D007701 9.4e-11 70.5 45 64.4
Lsat_1_v5_gn_5_114460 Lactuca sativa HOM05D006153 ORTHO05D007701 9.4e-11 70.5 86 40.7
Thhalv10021904m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 1.2e-10 70.1 52 59.6
HanXRQChr16g0514901 Helianthus annuus HOM05D006153 ORTHO05D007701 1.2e-10 70.1 107 40.2
Medtr5g005180 Medicago truncatula HOM05D006153 ORTHO05D007701 1.2e-10 70.1 42 64.3
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 4.6e-10 68.2 63 47.6
DCAR_001674 Daucus carota HOM05D006153 ORTHO05D007701 4.6e-10 68.2 61 52.5
DCAR_003609 Daucus carota HOM05D006153 ORTHO05D007701 4.6e-10 68.2 53 56.6
Zm00001eb138020 Zea mays HOM05D006153 ORTHO05D007701 4.6e-10 68.2 49 57.1
HanXRQChr16g0514921 Helianthus annuus HOM05D006153 ORTHO05D007701 6.1e-10 67.8 93 40.9
ECA234G4313 Erigeron canadensis HOM05D006153 ORTHO05D007701 1.0e-09 67.0 40 60.0
HanXRQChr13g0425861 Helianthus annuus HOM05D006153 ORTHO05D007701 1.8e-09 66.2 40 60.0
TPR.G8325 Trifolium pratense HOM05D006153 ORTHO05D007701 3.0e-09 65.5 44 61.4
Zm00001eb264740 Zea mays HOM05D006153 ORTHO05D007701 5.1e-09 64.7 51 49.0
Ciclev10029838m.g Citrus clementina HOM05D006153 ORTHO05D007701 8.8e-09 63.9 44 63.6
ECA234G3366 Erigeron canadensis HOM05D006153 ORTHO05D007701 2.2e-07 59.3 40 57.5
Eucgr.G01281 Eucalyptus grandis HOM05D006153 ORTHO05D007701 2.2e-07 59.3 93 36.6
Aqoxy6G02750 Aquilegia oxysepala HOM05D000096 ORTHO05D000045 2.8e-07 58.9 42 59.5
Duzib235G0354 Durio zibethinus HOM05D008232 ORTHO05D010390 2.8e-07 58.9 38 60.5
Ca_24350_v3 Cicer arietinum L. HOM05D006153 ORTHO05D007701 3.7e-07 58.5 38 55.3
Manes.06G016400 Manihot esculenta HOM05D008232 ORTHO05D010390 6.3e-07 57.8 87 33.3
Cpa.g.sc2471.1 Carica papaya HOM05D008232 ORTHO05D010390 8.2e-07 57.4 38 63.2
Aqoxy7G03060 Aquilegia oxysepala HOM05D008232 ORTHO05D010390 1.1e-06 57.0 34 67.6
Gohir.A05G117900 Gossypium hirsutum HOM05D008232 ORTHO05D010390 1.4e-06 56.6 41 63.4
TAR383G0592 Trochodendron aralioides HOM05D008232 ORTHO05D010390 1.4e-06 56.6 90 38.9
Gohir.D05G118800 Gossypium hirsutum HOM05D008232 ORTHO05D010390 1.8e-06 56.2 53 50.9
Gorai.009G122800 Gossypium raimondii HOM05D008232 ORTHO05D010390 2.4e-06 55.8 53 50.9
Thecc.06G043900 Theobroma cacao HOM05D000051 ORTHO05D000015 5.3e-06 54.7 35 62.9
HanXRQChr09g0274311 Helianthus annuus HOM05D008232 ORTHO05D010390 6.9e-06 54.3 90 34.4
CiPaw.03G112900 Carya illinoinensis HOM05D008232 ORTHO05D010390 9.1e-06 53.9 51 52.9


User provided reference genes

Program Settings