Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 8.1e-129 463.8 238 100.0
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 2.9e-78 295.8 238 68.5
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 6.6e-70 268.1 241 62.7
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 7.2e-69 264.6 241 63.1
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 4.0e-67 258.8 242 64.0
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 1.2e-66 257.3 241 61.8
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 4.4e-66 255.4 239 62.8
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 5.7e-66 255.0 241 61.4
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 5.7e-66 255.0 236 62.7
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 7.5e-66 254.6 241 61.4
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 1.7e-65 253.4 242 60.7
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 4.9e-65 251.9 241 60.6
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 4.9e-65 251.9 237 59.1
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 1.8e-64 250.0 256 58.2
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 4.1e-64 248.8 237 59.1
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 7.0e-64 248.1 237 59.9
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 7.0e-64 248.1 240 57.1
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.7e-62 243.4 241 59.3
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 5.0e-62 241.9 241 58.5
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 5.0e-62 241.9 241 59.8
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 5.0e-62 241.9 241 58.9
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 1.1e-61 240.7 231 58.4
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 1.5e-61 240.4 240 57.9
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 1.9e-61 240.0 241 57.3
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 2.5e-61 239.6 241 57.3
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 3.3e-61 239.2 243 60.1
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 4.3e-61 238.8 241 57.7
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 5.6e-61 238.4 242 59.1
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 2.8e-60 236.1 241 57.7
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 3.6e-60 235.7 236 55.5
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 4.7e-60 235.3 242 57.9
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 4.7e-60 235.3 241 55.2
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 4.7e-60 235.3 240 55.8
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 1.0e-59 234.2 241 54.8
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 1.0e-59 234.2 157 77.7
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.8e-59 233.4 244 55.3
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 2.3e-59 233.0 238 55.5
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 2.3e-59 233.0 235 57.9
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 3.1e-59 232.6 239 55.6
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 1.2e-58 230.7 219 59.4
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 1.5e-58 230.3 240 55.8
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 1.5e-58 230.3 238 57.6
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 1.5e-58 230.3 291 49.1
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 2.0e-58 229.9 241 58.5
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 2.6e-58 229.6 238 55.0
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 1.3e-57 227.3 236 56.4
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 8.3e-57 224.6 246 55.3
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 1.4e-56 223.8 238 58.4
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 1.9e-56 223.4 242 57.4
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 4.1e-56 222.2 239 55.2
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 4.1e-56 222.2 238 58.0
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 5.4e-56 221.9 239 58.2
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 5.4e-56 221.9 241 56.4
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 7.0e-56 221.5 199 63.8
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 7.0e-56 221.5 244 54.1
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 9.2e-56 221.1 221 58.4
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 3.5e-55 219.2 238 54.6
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 6.0e-55 218.4 154 72.1
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 7.8e-55 218.0 238 55.0
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 7.8e-55 218.0 242 55.0
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 1.3e-54 217.2 152 73.0
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 2.3e-54 216.5 150 74.0
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 1.9e-53 213.4 151 70.9
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 1.9e-53 213.4 238 54.6
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 3.3e-53 212.6 239 53.6
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 4.3e-53 212.2 239 55.2
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 5.6e-53 211.8 240 55.0
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 7.3e-53 211.5 189 60.3
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 9.5e-53 211.1 154 73.4
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 1.2e-52 210.7 238 54.2
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 6.2e-52 208.4 169 65.7
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 6.2e-52 208.4 201 62.2
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 6.2e-52 208.4 239 53.1
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 1.1e-51 207.6 232 53.4
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 1.4e-51 207.2 239 52.7
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 6.8e-51 204.9 238 52.9
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 1.2e-50 204.1 186 63.4
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 1.5e-50 203.8 171 66.1
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 2.0e-50 203.4 232 54.7
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 4.4e-50 202.2 188 60.6
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 1.7e-49 200.3 152 69.1
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 6.4e-49 198.4 143 72.7
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 1.1e-48 197.6 152 67.1
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 4.1e-48 195.7 209 54.5
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 1.2e-47 194.1 240 52.9
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 1.0e-46 191.0 209 53.1
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 3.0e-46 189.5 209 53.6
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 8.6e-46 188.0 209 54.1
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 1.1e-45 187.6 153 64.1
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 1.1e-45 187.6 144 68.8
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 1.5e-45 187.2 191 55.5
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 3.3e-45 186.0 209 53.6
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 5.6e-45 185.3 194 54.1
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 7.3e-45 184.9 152 63.8
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 1.2e-44 184.1 242 49.6
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 1.2e-44 184.1 240 48.8
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 1.2e-44 184.1 146 67.8
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 3.1e-43 179.5 217 52.1
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 3.1e-43 179.5 212 52.8
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 4.0e-43 179.1 217 52.1
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 4.0e-43 179.1 217 52.1
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 6.8e-43 178.3 217 51.6
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 1.2e-42 177.6 213 52.1
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 2.6e-42 176.4 217 51.2
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 2.6e-42 176.4 217 51.2
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 3.4e-42 176.0 241 47.7
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 5.8e-42 175.3 213 50.7
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 7.5e-42 174.9 154 61.7
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 1.7e-41 173.7 144 65.3
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 2.2e-41 173.3 112 80.4
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 4.6e-39 165.6 206 50.5
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 2.3e-38 163.3 145 60.0
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 3.0e-38 162.9 147 63.3
BcaB04g17278 Brassica carinata HOM05D005311 ORTHO05D006160 1.1e-37 161.0 146 62.3
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 3.3e-37 159.5 143 60.1
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 3.6e-36 156.0 236 45.8
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 8.9e-35 151.4 146 56.2
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 2.0e-34 150.2 198 52.0
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 5.8e-34 148.7 219 49.3
Zm00001eb201730 Zea mays HOM05D005311 ORTHO05D006160 1.3e-33 147.5 152 54.6
Haze_10287 Corylus avellana HOM05D005311 ORTHO05D006160 6.0e-31 138.7 106 69.8
Os11g0549900 Oryza sativa ssp. japonica HOM05D005311 ORTHO05D006160 1.3e-30 137.5 153 51.6
Cfa004693 Carpinus fangiana HOM05D005311 ORTHO05D006160 7.3e-29 131.7 78 89.7
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 1.6e-28 130.6 140 51.4
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 3.6e-28 129.4 117 64.1
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 1.1e-27 127.9 244 38.5
Oeu037691.1 Olea europaea HOM05D005311 ORTHO05D006160 9.9e-26 121.3 96 70.8
CDE04G0288 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 2.9e-25 119.8 87 66.7
SMO118G0105 Selaginella moellendorffii HOM05D005311 ORTHO05D006160 2.4e-24 116.7 164 43.3
arahy.Tifrunner.gnm1.ann1.6ZTX4G Arachis hypogaea HOM05D005311 ORTHO05D006160 7.8e-23 111.7 144 45.8
Mapoly0159s0003 Marchantia polymorpha HOM05D005311 ORTHO05D006160 7.8e-23 111.7 152 46.1
TAR365G0893 Trochodendron aralioides HOM05D005311 ORTHO05D006160 2.3e-22 110.2 189 43.4
Pp3c9_20640 Physcomitrium patens HOM05D005311 ORTHO05D006160 3.9e-22 109.4 153 45.8
CSS0025480 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 3.3e-21 106.3 168 47.0
SGA_v2.0_scaffold225G43064 Striga asiatica HOM05D005311 ORTHO05D006160 1.3e-20 104.4 164 48.8
Rhsim05G0093200 Rhododendron simsii HOM05D005311 ORTHO05D006160 1.4e-19 100.9 198 40.4
AagrBONN_evm.TU.Sc2ySwM_340.346 Anthoceros agrestis HOM05D005311 ORTHO05D006160 1.5e-18 97.4 159 40.9
arahy.Tifrunner.gnm1.ann1.TC5M0Q Arachis hypogaea HOM05D005311 ORTHO05D006160 8.4e-17 91.7 150 38.0
vmacro22259 Vaccinium macrocarpon HOM05D005311 ORTHO05D006160 3.2e-16 89.7 125 45.6
Dinv44912 Davidia involucrata HOM05D005311 ORTHO05D006160 7.9e-15 85.1 111 47.7
CDE02G0336 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 1.0e-14 84.7 139 46.0
Dinv16067 Davidia involucrata HOM05D005311 ORTHO05D006160 4.3e-13 79.3 135 41.5
Cre14.g614000 Chlamydomonas reinhardtii HOM05D005311 ORTHO05D006160 9.6e-13 78.2 89 48.3
arahy.Tifrunner.gnm1.ann1.HG6PX3 Arachis hypogaea HOM05D005311 ORTHO05D006160 2.1e-12 77.0 133 37.6
CARHR113150 Cardamine hirsuta HOM05D005311 ORTHO05D006160 1.1e-11 74.7 51 72.5
CBR_g12748 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-11 73.6 71 54.9
HPP92_006035 Vanilla planifolia HOM05D005311 ORTHO05D006160 9.0e-11 71.6 104 49.0
CSS0010436 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 1.0e-09 68.2 41 78.0
SEGI_31449 Sequoiadendron giganteum HOM05D005311 ORTHO05D006160 4.9e-09 65.9 103 49.5
Cfa004692 Carpinus fangiana HOM05D005311 ORTHO05D006160 1.2e-07 61.2 50 68.0
arahy.Tifrunner.gnm1.ann1.HI4HR4 Arachis hypogaea HOM05D000211 ORTHO05D002517 6.7e-06 55.5 79 43.0


User provided reference genes

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