Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p029016 Quercus lobata HOM05D002370 ORTHO05D026326 1.2e-178 629.8 325 100.0
CiPaw.06G163300 Carya illinoinensis HOM05D002370 ORTHO05D003878 5.1e-57 225.7 124 87.1
VMungo1215G1081 Vigna mungo HOM05D002370 ORTHO05D003878 1.1e-56 224.6 124 86.3
ClCG02G007160 Citrullus lanatus HOM05D002370 ORTHO05D003878 1.5e-56 224.2 124 86.3
MELO3C018533.2 Cucumis melo HOM05D002370 ORTHO05D003878 1.5e-56 224.2 124 86.3
CsaV3_7G007670 Cucumis sativus L. HOM05D002370 ORTHO05D003878 1.5e-56 224.2 124 86.3
Sed0018886 Sechium edule HOM05D002370 ORTHO05D003878 1.5e-56 224.2 124 86.3
CiPaw.05G021600 Carya illinoinensis HOM05D002370 ORTHO05D003878 4.3e-56 222.6 124 84.7
arahy.Tifrunner.gnm1.ann1.3J1H0B Arachis hypogaea HOM05D002370 ORTHO05D003878 2.1e-55 220.3 124 84.7
Phvul.002G049900 Phaseolus vulgaris HOM05D002370 ORTHO05D003878 8.1e-55 218.4 124 83.9
Glyma.01G241300 Glycine max HOM05D002370 ORTHO05D003878 1.1e-54 218.0 124 83.9
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 2.4e-54 216.9 127 81.1
Psat4g229000 Pisum sativum HOM05D002370 ORTHO05D003878 5.3e-54 215.7 124 82.3
Ca_24363_v3 Cicer arietinum L. HOM05D002370 ORTHO05D003878 6.9e-54 215.3 124 81.5
Glyma.11G002600 Glycine max HOM05D002370 ORTHO05D003878 6.9e-54 215.3 124 83.1
FAN20G2522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.2e-53 214.5 127 80.3
Medtr5g005380 Medicago truncatula HOM05D002370 ORTHO05D003878 1.2e-53 214.5 124 80.6
Lj1g0008728 Lotus japonicus HOM05D002370 ORTHO05D003878 2.6e-53 213.4 124 80.6
Cc02_g20160 Coffea canephora HOM05D002370 ORTHO05D003878 3.4e-53 213.0 124 82.3
FAN27G1380 Fragaria x ananassa HOM05D002370 ORTHO05D003878 4.5e-53 212.6 127 79.5
FvH4_2g03080 Fragaria vesca HOM05D002370 ORTHO05D003878 5.8e-53 212.2 124 82.3
Sabra09G0065200 Salix brachista HOM05D002370 ORTHO05D003878 7.6e-53 211.8 129 78.3
Lalb_Chr05g0210831 Lupinus albus HOM05D002370 ORTHO05D003878 9.9e-53 211.5 124 80.6
Potri.001G289200 Populus trichocarpa HOM05D002370 ORTHO05D003878 1.3e-52 211.1 124 81.5
Lalb_Chr16g0376321 Lupinus albus HOM05D002370 ORTHO05D003878 2.2e-52 210.3 124 81.5
Manes.07G052660 Manihot esculenta HOM05D002370 ORTHO05D003878 2.9e-52 209.9 124 80.6
TPR.G8301 Trifolium pratense HOM05D002370 ORTHO05D003878 2.9e-52 209.9 124 79.0
Dinv09531 Davidia involucrata HOM05D002370 ORTHO05D003878 4.9e-52 209.1 124 81.5
Potri.009G084500 Populus trichocarpa HOM05D002370 ORTHO05D003878 6.4e-52 208.8 124 80.6
TWI59G1328 Tripterygium wilfordii HOM05D002370 ORTHO05D003878 6.4e-52 208.8 124 81.5
Prupe.8G151300 Prunus persica HOM05D002370 ORTHO05D003878 1.1e-51 208.0 124 79.8
CSS0028039 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 1.4e-51 207.6 124 82.3
Ciclev10027661m.g Citrus clementina HOM05D002370 ORTHO05D003878 1.4e-51 207.6 124 81.5
Atru.chr4.155 Acer truncatum HOM05D002370 ORTHO05D003878 1.9e-51 207.2 124 80.6
MD05G1107800 Malus domestica HOM05D002370 ORTHO05D003878 1.9e-51 207.2 124 79.8
DCAR_003604 Daucus carota HOM05D002370 ORTHO05D003878 3.2e-51 206.5 124 80.6
FAN15G3522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 3.2e-51 206.5 127 78.7
PGR142G4285 Punica granatum HOM05D002370 ORTHO05D003878 3.2e-51 206.5 124 80.6
Atru.chr4.144 Acer truncatum HOM05D002370 ORTHO05D003878 4.2e-51 206.1 124 79.8
Actinidia02446 Actinidia chinensis HOM05D002370 ORTHO05D003878 4.2e-51 206.1 124 80.6
MD10G1112000 Malus domestica HOM05D002370 ORTHO05D003878 4.2e-51 206.1 124 79.8
PSO541G1630 Papaver somniferum HOM05D002370 ORTHO05D003878 7.1e-51 205.3 124 79.8
Migut.B00477 Erythranthe guttata HOM05D002370 ORTHO05D003878 9.3e-51 204.9 124 77.4
Oeu028915.2 Olea europaea HOM05D002370 ORTHO05D003878 9.3e-51 204.9 124 78.2
TAR625G0640 Trochodendron aralioides HOM05D002370 ORTHO05D003878 9.3e-51 204.9 124 79.8
unitig_60.g25464 Utricularia gibba HOM05D002370 ORTHO05D003878 9.3e-51 204.9 131 74.8
MSTRG.16667 Avicennia marina HOM05D002370 ORTHO05D003878 1.2e-50 204.5 124 78.2
Nn5g30713 Nelumbo nucifera HOM05D002370 ORTHO05D003878 1.2e-50 204.5 124 79.0
Duzib132G1084 Durio zibethinus HOM05D002370 ORTHO05D003878 1.6e-50 204.1 124 80.6
RcHm_v2.0_Chr6g0247951 Rosa chinensis HOM05D002370 ORTHO05D003878 1.6e-50 204.1 123 80.5
Lsat_1_v5_gn_4_143680 Lactuca sativa HOM05D002370 ORTHO05D003878 2.1e-50 203.8 124 79.0
PSO675G4735 Papaver somniferum HOM05D002370 ORTHO05D003878 2.1e-50 203.8 124 79.8
Thecc.02G120900 Theobroma cacao HOM05D002370 ORTHO05D003878 2.1e-50 203.8 124 79.8
Lj5C222G6 Lonicera japonica HOM05D002370 ORTHO05D003878 2.7e-50 203.4 124 77.4
TAR381G0773 Trochodendron aralioides HOM05D002370 ORTHO05D003878 3.5e-50 203.0 124 80.6
CSS0026275 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 7.9e-50 201.8 127 74.8
COL.COLO4_32473 Corchorus olitorius HOM05D002370 ORTHO05D003878 7.9e-50 201.8 127 76.4
Hma1.2p1_1051F.1_g252210 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 7.9e-50 201.8 124 77.4
Gohir.A12G018200 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.3e-49 201.1 124 79.8
Gohir.D12G018800 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.3e-49 201.1 124 79.8
Gorai.008G019100 Gossypium raimondii HOM05D002370 ORTHO05D003878 1.3e-49 201.1 124 79.8
Oeu025303.1 Olea europaea HOM05D002370 ORTHO05D003878 1.3e-49 201.1 124 76.6
HanXRQChr04g0107281 Helianthus annuus HOM05D002370 ORTHO05D003878 1.8e-49 200.7 124 77.4
PSO675G3080 Papaver somniferum HOM05D002370 ORTHO05D003878 3.0e-49 199.9 124 79.0
GSVIVG01037040001 Vitis vinifera HOM05D002370 ORTHO05D003878 3.0e-49 199.9 124 78.2
Aqoxy6G01518 Aquilegia oxysepala HOM05D002370 ORTHO05D003878 3.9e-49 199.5 124 75.8
DCAR_021938 Daucus carota HOM05D002370 ORTHO05D003878 3.9e-49 199.5 124 77.4
HanXRQChr04g0107251 Helianthus annuus HOM05D002370 ORTHO05D003878 3.9e-49 199.5 124 76.6
PSO732G0082 Papaver somniferum HOM05D002370 ORTHO05D003878 3.9e-49 199.5 124 78.2
ECA232G2594 Erigeron canadensis HOM05D002370 ORTHO05D003878 5.1e-49 199.1 124 77.4
SalBow6G1889 Salvia bowleyana HOM05D002370 ORTHO05D003878 6.7e-49 198.7 128 74.2
AUR62027030 Chenopodium quinoa HOM05D002370 ORTHO05D003878 1.1e-48 198.0 127 74.0
AUR62030874 Chenopodium quinoa HOM05D002370 ORTHO05D003878 1.1e-48 198.0 127 74.0
Gohir.A01G009500 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.1e-48 198.0 124 78.2
Gohir.D01G009100 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.1e-48 198.0 124 78.2
Gorai.002G011200 Gossypium raimondii HOM05D002370 ORTHO05D003878 1.1e-48 198.0 124 78.2
Peaxi162Scf00016g03243 Petunia axillaris HOM05D002370 ORTHO05D003878 1.1e-48 198.0 135 73.3
vmacro01938 Vaccinium macrocarpon HOM05D002370 ORTHO05D003878 1.5e-48 197.6 124 79.0
CAN.G606.78 Capsicum annuum HOM05D002370 ORTHO05D003878 3.3e-48 196.4 135 72.6
Sc18g0007320 Simmondsia chinensis HOM05D002370 ORTHO05D003878 4.3e-48 196.1 124 75.8
Solyc01g106770.4 Solanum lycopersicum HOM05D002370 ORTHO05D003878 5.6e-48 195.7 135 72.6
Sopen01g049080 Solanum pennellii HOM05D002370 ORTHO05D003878 5.6e-48 195.7 135 72.6
SGA_v2.0_scaffold519G52682 Striga asiatica HOM05D002370 ORTHO05D003878 7.4e-48 195.3 125 76.8
HPP92_016412 Vanilla planifolia HOM05D002370 ORTHO05D003878 7.4e-48 195.3 135 70.4
ATR0753G079 Amborella trichopoda HOM05D002370 ORTHO05D003878 1.6e-47 194.1 124 75.0
PGSC0003DMG401025733 Solanum tuberosum HOM05D002370 ORTHO05D003878 1.6e-47 194.1 135 71.9
Nitab4.5_0010974g0020 Nicotiana tabacum HOM05D002370 ORTHO05D003878 2.1e-47 193.7 124 75.8
EL10Ac9g22169 Beta vulgaris HOM05D002370 ORTHO05D003878 3.7e-47 193.0 127 70.9
AL1G57600 Arabidopsis lyrata HOM05D002370 ORTHO05D003878 6.2e-47 192.2 124 74.2
AT1G50030 Arabidopsis thaliana HOM05D002370 ORTHO05D003878 6.2e-47 192.2 124 74.2
Nitab4.5_0000772g0070 Nicotiana tabacum HOM05D002370 ORTHO05D003878 6.2e-47 192.2 124 75.8
THA.LOC104826500 Tarenaya hassleriana HOM05D002370 ORTHO05D003878 6.2e-47 192.2 124 74.2
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 8.1e-47 191.8 136 67.6
SGA_v2.0_scaffold32G12979 Striga asiatica HOM05D002370 ORTHO05D003878 1.4e-46 191.0 125 76.0
Carub.0001s3921 Capsella rubella HOM05D002370 ORTHO05D003878 3.1e-46 189.9 124 73.4
Thhalv10011174m.g Eutrema salsugineum HOM05D002370 ORTHO05D003878 3.1e-46 189.9 124 73.4
Rhsim11G0149700 Rhododendron simsii HOM05D002370 ORTHO05D003878 3.1e-46 189.9 120 78.3
Sp1g36890 Schrenkiella parvula HOM05D002370 ORTHO05D003878 3.1e-46 189.9 124 73.4
Eucgr.I02503 Eucalyptus grandis HOM05D002370 ORTHO05D003878 4.0e-46 189.5 124 76.6
SHI03324 Sapria himalayana HOM05D002370 ORTHO05D003878 4.0e-46 189.5 138 65.2
arahy.Tifrunner.gnm1.ann1.NYP183 Arachis hypogaea HOM05D002370 ORTHO05D003878 6.9e-46 188.7 124 75.8
Zm00001eb285840 Zea mays HOM05D002370 ORTHO05D003878 1.2e-45 188.0 129 75.2
BcaC05g27452 Brassica carinata HOM05D002370 ORTHO05D003878 2.6e-45 186.8 124 72.6
A05p20360 Brassica napus HOM05D002370 ORTHO05D003878 2.6e-45 186.8 124 72.6
BolC5t32146H Brassica oleracea HOM05D002370 ORTHO05D003878 2.6e-45 186.8 124 72.6
BraA05t20943Z Brassica rapa HOM05D002370 ORTHO05D003878 2.6e-45 186.8 124 72.6
CARHR040140 Cardamine hirsuta HOM05D002370 ORTHO05D003878 2.6e-45 186.8 124 72.6
A06p03390 Brassica napus HOM05D002370 ORTHO05D003878 5.8e-45 185.7 124 71.8
BraA06t23548Z Brassica rapa HOM05D002370 ORTHO05D003878 5.8e-45 185.7 124 71.8
BcaB07g33455 Brassica carinata HOM05D002370 ORTHO05D003878 7.6e-45 185.3 124 71.8
BcaB02g11126 Brassica carinata HOM05D002370 ORTHO05D003878 1.3e-44 184.5 124 71.8
BcaC08g43183 Brassica carinata HOM05D002370 ORTHO05D003878 1.3e-44 184.5 124 71.8
C06p04900 Brassica napus HOM05D002370 ORTHO05D003878 1.3e-44 184.5 124 71.8
BolC6t35612H Brassica oleracea HOM05D002370 ORTHO05D003878 1.3e-44 184.5 124 71.8
Os05g0235300 Oryza sativa ssp. japonica HOM05D002370 ORTHO05D003878 1.7e-44 184.1 129 72.9
C05p34110 Brassica napus HOM05D002370 ORTHO05D003878 2.9e-44 183.3 124 71.8
SEGI_12344 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 1.3e-41 174.5 131 68.7
SEGI_17280 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 1.3e-41 174.5 131 67.9
MD00G1031100 Malus domestica HOM05D002370 ORTHO05D003878 4.8e-39 166.0 101 79.2
Mapoly0047s0119 Marchantia polymorpha HOM05D002370 ORTHO05D003878 6.3e-39 165.6 124 63.7
SMO147G0225 Selaginella moellendorffii HOM05D002370 ORTHO05D003878 2.2e-31 140.6 137 50.4
Cpa.g.sc520.1 Carica papaya HOM05D002370 ORTHO05D003878 2.8e-31 140.2 88 78.4
AagrBONN_evm.TU.Sc2ySwM_228.5412 Anthoceros agrestis HOM05D002370 ORTHO05D003878 4.5e-29 132.9 131 50.4
Pp3c6_4910 Physcomitrium patens HOM05D002370 ORTHO05D003878 1.0e-28 131.7 135 51.9
PRCOL_00002418 Prasinoderma coloniale HOM05D002370 ORTHO05D003878 2.0e-21 107.5 127 43.3
MCO06G142 Micromonas commoda HOM05D002370 ORTHO05D003878 9.4e-19 98.6 139 41.0
Actinidia00351 Actinidia chinensis HOM05D002370 ORTHO05D003878 4.7e-18 96.3 119 49.6
Ah.01g024560 Amaranthus hybridus HOM05D002370 ORTHO05D003878 1.8e-17 94.4 54 79.6
PGSC0003DMG400004176 Solanum tuberosum HOM05D002370 ORTHO05D037765 7.4e-16 89.0 87 54.0
CBR_g23926 Chara braunii HOM05D002370 ORTHO05D003878 7.0e-14 82.4 130 39.2
Haze_26242 Corylus avellana HOM05D002370 ORTHO05D003878 2.1e-10 70.9 127 33.1
Cre09.g400553 Chlamydomonas reinhardtii HOM05D002370 ORTHO05D003878 4.7e-10 69.7 124 35.5
Actinidia17534 Actinidia chinensis HOM05D002370 ORTHO05D026326 8.8e-09 65.5 58 58.6
CDE06G0012 Ceratophyllum demersum HOM05D002370 ORTHO05D003878 3.3e-08 63.5 37 78.4
Hma1.2p1_1758F.1_g301200 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 7.5e-08 62.4 41 73.2
CSS0024853 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D000105 7.0e-06 55.8 58 53.4


User provided reference genes

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