Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p028985 Quercus lobata HOM05D002370 ORTHO05D003878 3.7e-158 561.6 310 100.0
Thecc.02G120900 Theobroma cacao HOM05D002370 ORTHO05D003878 2.0e-127 459.5 286 83.2
Cpa.g.sc106.24 Carica papaya HOM05D002370 ORTHO05D003878 9.9e-127 457.2 280 84.3
MD00G1031100 Malus domestica HOM05D002370 ORTHO05D003878 9.9e-127 457.2 290 82.1
MD10G1112000 Malus domestica HOM05D002370 ORTHO05D003878 9.9e-127 457.2 290 82.1
Gohir.D01G009100 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.7e-126 456.4 286 81.8
Gorai.002G011200 Gossypium raimondii HOM05D002370 ORTHO05D003878 1.7e-126 456.4 286 81.8
Aqoxy6G01518 Aquilegia oxysepala HOM05D002370 ORTHO05D003878 2.2e-126 456.1 254 90.2
Nn5g30713 Nelumbo nucifera HOM05D002370 ORTHO05D003878 2.9e-126 455.7 286 81.8
Haze_10321 Corylus avellana HOM05D002370 ORTHO05D003878 6.4e-126 454.5 280 89.3
Gorai.008G019100 Gossypium raimondii HOM05D002370 ORTHO05D003878 8.4e-126 454.1 286 81.5
Glyma.01G241300 Glycine max HOM05D002370 ORTHO05D003878 1.1e-125 453.8 252 90.1
Glyma.11G002600 Glycine max HOM05D002370 ORTHO05D003878 1.1e-125 453.8 252 90.1
FvH4_2g03080 Fragaria vesca HOM05D002370 ORTHO05D003878 1.4e-125 453.4 286 80.8
FAN24G1227 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.4e-125 453.4 286 80.8
Gohir.A12G018200 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.9e-125 453.0 286 81.1
Gohir.D12G018800 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.9e-125 453.0 286 81.5
arahy.Tifrunner.gnm1.ann1.3J1H0B Arachis hypogaea HOM05D002370 ORTHO05D003878 3.2e-125 452.2 254 89.4
arahy.Tifrunner.gnm1.ann1.NYP183 Arachis hypogaea HOM05D002370 ORTHO05D003878 3.2e-125 452.2 254 89.4
Prupe.8G151300 Prunus persica HOM05D002370 ORTHO05D003878 3.2e-125 452.2 286 81.5
Ciclev10027661m.g Citrus clementina HOM05D002370 ORTHO05D003878 4.2e-125 451.8 286 82.2
RcHm_v2.0_Chr6g0247951 Rosa chinensis HOM05D002370 ORTHO05D003878 5.4e-125 451.4 254 88.6
CiPaw.06G163300 Carya illinoinensis HOM05D002370 ORTHO05D003878 1.2e-124 450.3 285 83.2
FAN15G3522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.2e-124 450.3 286 80.4
FAN20G2522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.2e-124 450.3 286 80.1
PSO675G4735 Papaver somniferum HOM05D002370 ORTHO05D003878 1.6e-124 449.9 254 88.2
VMungo1215G1081 Vigna mungo HOM05D002370 ORTHO05D003878 2.1e-124 449.5 252 89.7
FAN27G1380 Fragaria x ananassa HOM05D002370 ORTHO05D003878 2.7e-124 449.1 286 80.1
TAR381G0773 Trochodendron aralioides HOM05D002370 ORTHO05D003878 3.5e-124 448.7 286 80.4
CiPaw.05G021600 Carya illinoinensis HOM05D002370 ORTHO05D003878 6.0e-124 448.0 286 85.7
Atru.chr4.144 Acer truncatum HOM05D002370 ORTHO05D003878 1.0e-123 447.2 286 80.8
ClCG02G007160 Citrullus lanatus HOM05D002370 ORTHO05D003878 1.0e-123 447.2 286 79.7
MELO3C018533.2 Cucumis melo HOM05D002370 ORTHO05D003878 1.0e-123 447.2 286 79.7
CsaV3_7G007670 Cucumis sativus L. HOM05D002370 ORTHO05D003878 1.0e-123 447.2 286 79.7
PSO541G1630 Papaver somniferum HOM05D002370 ORTHO05D003878 1.3e-123 446.8 254 87.4
Duzib132G1084 Durio zibethinus HOM05D002370 ORTHO05D003878 1.8e-123 446.4 286 80.4
Dinv09531 Davidia involucrata HOM05D002370 ORTHO05D003878 3.0e-123 445.7 286 79.4
Phvul.002G049900 Phaseolus vulgaris HOM05D002370 ORTHO05D003878 3.0e-123 445.7 252 88.9
Sed0018886 Sechium edule HOM05D002370 ORTHO05D003878 3.9e-123 445.3 286 80.1
DCAR_003604 Daucus carota HOM05D002370 ORTHO05D003878 5.1e-123 444.9 252 88.5
Atru.chr4.155 Acer truncatum HOM05D002370 ORTHO05D003878 1.1e-122 443.7 286 80.4
Lj1g0008728 Lotus japonicus HOM05D002370 ORTHO05D003878 1.1e-122 443.7 252 88.5
MD05G1107800 Malus domestica HOM05D002370 ORTHO05D003878 1.1e-122 443.7 286 80.4
TWI59G1328 Tripterygium wilfordii HOM05D002370 ORTHO05D003878 1.1e-122 443.7 289 80.6
Psat4g229000 Pisum sativum HOM05D002370 ORTHO05D003878 1.9e-122 443.0 252 88.5
Lj5C222G6 Lonicera japonica HOM05D002370 ORTHO05D003878 2.5e-122 442.6 286 79.4
CSS0028039 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 4.3e-122 441.8 254 86.2
Ca_24363_v3 Cicer arietinum L. HOM05D002370 ORTHO05D003878 4.3e-122 441.8 252 88.1
Manes.07G052660 Manihot esculenta HOM05D002370 ORTHO05D003878 4.3e-122 441.8 286 80.4
TAR625G0605 Trochodendron aralioides HOM05D002370 ORTHO05D003878 7.4e-122 441.0 286 80.4
Medtr5g005380 Medicago truncatula HOM05D002370 ORTHO05D003878 1.6e-121 439.9 252 87.7
Potri.001G289200 Populus trichocarpa HOM05D002370 ORTHO05D003878 1.6e-121 439.9 286 79.7
THA.LOC104826500 Tarenaya hassleriana HOM05D002370 ORTHO05D003878 2.8e-121 439.1 286 77.6
TPR.G8301 Trifolium pratense HOM05D002370 ORTHO05D003878 2.8e-121 439.1 252 87.7
CSS0026275 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 1.2e-119 433.7 287 78.0
Peaxi162Scf00016g03243 Petunia axillaris HOM05D002370 ORTHO05D003878 7.6e-119 431.0 286 75.5
Solyc01g106770.4 Solanum lycopersicum HOM05D002370 ORTHO05D003878 7.6e-119 431.0 286 74.8
Sopen01g049080 Solanum pennellii HOM05D002370 ORTHO05D003878 7.6e-119 431.0 286 74.8
Hma1.2p1_1051F.1_g252210 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 9.9e-119 430.6 287 77.7
PGSC0003DMG401025733 Solanum tuberosum HOM05D002370 ORTHO05D003878 9.9e-119 430.6 286 74.8
Actinidia02446 Actinidia chinensis HOM05D002370 ORTHO05D003878 1.3e-118 430.3 286 77.3
Rhsim11G0149700 Rhododendron simsii HOM05D002370 ORTHO05D003878 2.2e-118 429.5 286 77.6
Sabra09G0065200 Salix brachista HOM05D002370 ORTHO05D003878 2.2e-118 429.5 286 78.7
Potri.009G084500 Populus trichocarpa HOM05D002370 ORTHO05D003878 3.8e-118 428.7 286 78.0
HanXRQChr04g0107251 Helianthus annuus HOM05D002370 ORTHO05D003878 8.4e-118 427.6 286 76.6
Lsat_1_v5_gn_4_143680 Lactuca sativa HOM05D002370 ORTHO05D003878 8.4e-118 427.6 286 76.9
ECA232G2594 Erigeron canadensis HOM05D002370 ORTHO05D003878 1.4e-117 426.8 254 83.1
Sc18g0007320 Simmondsia chinensis HOM05D002370 ORTHO05D003878 1.4e-117 426.8 254 83.1
ATR0753G079 Amborella trichopoda HOM05D002370 ORTHO05D003878 1.9e-117 426.4 252 85.3
AL1G57600 Arabidopsis lyrata HOM05D002370 ORTHO05D003878 4.2e-117 425.2 254 82.3
AT1G50030 Arabidopsis thaliana HOM05D002370 ORTHO05D003878 4.2e-117 425.2 254 82.3
Cc02_g20170 Coffea canephora HOM05D002370 ORTHO05D003878 4.2e-117 425.2 280 76.4
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 9.3e-117 424.1 322 71.1
DCAR_021938 Daucus carota HOM05D002370 ORTHO05D003878 2.1e-116 422.9 252 84.1
Carub.0001s3921 Capsella rubella HOM05D002370 ORTHO05D003878 2.7e-116 422.5 286 75.2
Thhalv10011174m.g Eutrema salsugineum HOM05D002370 ORTHO05D003878 2.7e-116 422.5 254 81.1
Sp1g36890 Schrenkiella parvula HOM05D002370 ORTHO05D003878 2.7e-116 422.5 254 81.1
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 7.9e-116 421.0 254 81.1
PSO732G0082 Papaver somniferum HOM05D002370 ORTHO05D003878 7.9e-116 421.0 254 83.5
PSO675G3080 Papaver somniferum HOM05D002370 ORTHO05D003878 2.3e-115 419.5 254 83.5
MSTRG.16667 Avicennia marina HOM05D002370 ORTHO05D003878 6.7e-115 417.9 286 73.8
CDE06G0012 Ceratophyllum demersum HOM05D002370 ORTHO05D003878 6.7e-115 417.9 286 74.1
Nitab4.5_0000772g0070 Nicotiana tabacum HOM05D002370 ORTHO05D003878 3.3e-114 415.6 286 72.7
Nitab4.5_0010974g0020 Nicotiana tabacum HOM05D002370 ORTHO05D003878 3.3e-114 415.6 286 72.7
SGA_v2.0_scaffold519G52682 Striga asiatica HOM05D002370 ORTHO05D003878 4.3e-114 415.2 291 72.5
AUR62027030 Chenopodium quinoa HOM05D002370 ORTHO05D003878 5.6e-114 414.8 286 74.1
HanXRQChr04g0107281 Helianthus annuus HOM05D002370 ORTHO05D003878 5.6e-114 414.8 286 74.5
EL10Ac9g22169 Beta vulgaris HOM05D002370 ORTHO05D003878 7.4e-114 414.5 254 79.9
AUR62030874 Chenopodium quinoa HOM05D002370 ORTHO05D003878 7.4e-114 414.5 286 74.1
Lalb_Chr05g0210831 Lupinus albus HOM05D002370 ORTHO05D003878 1.6e-113 413.3 255 80.8
CARHR040140 Cardamine hirsuta HOM05D002370 ORTHO05D003878 4.8e-113 411.8 254 80.3
Eucgr.I02503 Eucalyptus grandis HOM05D002370 ORTHO05D003878 4.8e-113 411.8 286 74.8
Migut.B00477 Erythranthe guttata HOM05D002370 ORTHO05D003878 6.2e-113 411.4 286 72.4
HPP92_016412 Vanilla planifolia HOM05D002370 ORTHO05D003878 8.2e-113 411.0 254 81.5
PGR142G4285 Punica granatum HOM05D002370 ORTHO05D003878 1.1e-112 410.6 286 75.2
Oeu028915.2 Olea europaea HOM05D002370 ORTHO05D003878 4.0e-112 408.7 286 73.1
BraA05t20943Z Brassica rapa HOM05D002370 ORTHO05D003878 6.9e-112 407.9 254 79.5
BraA06t23548Z Brassica rapa HOM05D002370 ORTHO05D003878 6.9e-112 407.9 254 78.7
BcaB07g33455 Brassica carinata HOM05D002370 ORTHO05D003878 1.2e-111 407.1 286 72.0
A06p03390 Brassica napus HOM05D002370 ORTHO05D003878 1.5e-111 406.8 254 78.3
BcaC05g27452 Brassica carinata HOM05D002370 ORTHO05D003878 5.8e-111 404.8 254 79.1
A05p20360 Brassica napus HOM05D002370 ORTHO05D003878 5.8e-111 404.8 254 78.7
C05p34110 Brassica napus HOM05D002370 ORTHO05D003878 5.8e-111 404.8 254 79.1
BolC5t32146H Brassica oleracea HOM05D002370 ORTHO05D003878 5.8e-111 404.8 254 79.1
BcaC08g43183 Brassica carinata HOM05D002370 ORTHO05D003878 2.2e-110 402.9 254 77.6
BolC6t35612H Brassica oleracea HOM05D002370 ORTHO05D003878 2.2e-110 402.9 254 77.6
Hma1.2p1_0661F.1_g197980 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 6.5e-110 401.4 235 85.1
C06p04900 Brassica napus HOM05D002370 ORTHO05D003878 3.2e-109 399.1 254 77.2
Ah.01g024560 Amaranthus hybridus HOM05D002370 ORTHO05D003878 7.9e-108 394.4 235 83.8
COL.COLO4_32473 Corchorus olitorius HOM05D002370 ORTHO05D003878 1.0e-107 394.0 253 81.0
CAN.G1164.1 Capsicum annuum HOM05D002370 ORTHO05D003878 3.7e-105 385.6 248 77.4
Os05g0235300 Oryza sativa ssp. japonica HOM05D002370 ORTHO05D003878 1.6e-100 370.2 230 81.3
Zm00001eb285840 Zea mays HOM05D002370 ORTHO05D003878 1.6e-100 370.2 230 81.7
Gohir.A01G009566 Gossypium hirsutum HOM05D002370 ORTHO05D003878 2.7e-100 369.4 203 89.7
CAN.G411.107 Capsicum annuum HOM05D002370 ORTHO05D003878 4.6e-100 368.6 252 73.4
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 1.3e-99 367.1 236 77.5
SEGI_12344 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 1.7e-97 360.1 236 76.7
unitig_60.g25464 Utricularia gibba HOM05D002370 ORTHO05D003878 3.4e-95 352.4 254 70.9
SHI03324 Sapria himalayana HOM05D002370 ORTHO05D003878 9.4e-93 344.4 228 78.5
BcaB02g11126 Brassica carinata HOM05D002370 ORTHO05D003878 4.7e-92 342.0 254 70.9
AagrBONN_evm.TU.Sc2ySwM_228.5412 Anthoceros agrestis HOM05D002370 ORTHO05D003878 6.7e-91 338.2 252 66.3
CAN.G1164.4 Capsicum annuum HOM05D002370 ORTHO05D003878 6.7e-91 338.2 215 76.7
SGA_v2.0_scaffold32G12979 Striga asiatica HOM05D002370 ORTHO05D003878 6.7e-91 338.2 213 78.9
CAN.G1627.7 Capsicum annuum HOM05D002370 ORTHO05D003878 1.7e-89 333.6 252 66.7
GSVIVG01037040001 Vitis vinifera HOM05D002370 ORTHO05D003878 3.1e-88 329.3 343 56.3
CAN.G289.59 Capsicum annuum HOM05D002370 ORTHO05D003878 1.9e-85 320.1 213 75.1
SMO147G0225 Selaginella moellendorffii HOM05D002370 ORTHO05D003878 4.2e-85 318.9 254 66.5
Pp3c6_4910 Physcomitrium patens HOM05D002370 ORTHO05D003878 3.6e-84 315.8 235 67.2
CAN.G1627.3 Capsicum annuum HOM05D002370 ORTHO05D003878 4.8e-81 305.4 205 75.1
Mapoly0047s0119 Marchantia polymorpha HOM05D002370 ORTHO05D003878 7.7e-79 298.1 221 67.0
SalBow6G1889 Salvia bowleyana HOM05D002370 ORTHO05D003878 2.2e-78 296.6 286 56.6
PRCOL_00002418 Prasinoderma coloniale HOM05D002370 ORTHO05D003878 5.2e-67 258.8 275 51.3
vmacro01937 Vaccinium macrocarpon HOM05D002370 ORTHO05D003878 1.6e-63 247.3 222 62.2
MCO06G142 Micromonas commoda HOM05D002370 ORTHO05D003878 1.1e-61 241.1 248 53.2
CBR_g23926 Chara braunii HOM05D002370 ORTHO05D003878 1.3e-57 227.6 258 47.7
Oeu025303.1 Olea europaea HOM05D002370 ORTHO05D003878 3.1e-56 223.0 123 88.6
Cre09.g400553 Chlamydomonas reinhardtii HOM05D002370 ORTHO05D003878 1.2e-55 221.1 266 47.0
CAN.G606.79 Capsicum annuum HOM05D002370 ORTHO05D020284 3.5e-55 219.5 187 61.5
CAN.G10698.1 Capsicum annuum HOM05D002370 ORTHO05D003878 2.9e-54 216.5 121 86.8
Haze_26242 Corylus avellana HOM05D002370 ORTHO05D003878 2.8e-28 130.2 257 33.1
Cfa026368 Carpinus fangiana HOM05D002370 ORTHO05D003878 4.7e-28 129.4 229 34.5
FAN20G0378 Fragaria x ananassa HOM05D002370 ORTHO05D020284 1.2e-26 124.8 176 43.2
Lalb_Chr16g0376331 Lupinus albus HOM05D002370 ORTHO05D020284 1.0e-22 111.7 57 93.0
Atru.chr5.2257 Acer truncatum HOM05D002370 ORTHO05D003878 1.7e-22 110.9 59 93.2
CDE04G3197 Ceratophyllum demersum HOM05D002370 ORTHO05D020284 8.7e-22 108.6 66 83.3
FAN15G0843 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.9e-21 107.5 69 79.7
PSO017G1105 Papaver somniferum HOM05D000352 ORTHO05D000260 9.6e-21 105.1 125 54.4
Lalb_Chr16g0376321 Lupinus albus HOM05D002370 ORTHO05D003878 2.2e-09 67.4 36 86.1
CAN.G289.58 Capsicum annuum HOM05D002370 ORTHO05D003878 1.2e-07 61.6 34 82.4
FvH4_2g06710 Fragaria vesca HOM05D002370 ORTHO05D020284 1.6e-07 61.2 35 82.9
FAN24G2034 Fragaria x ananassa HOM05D002370 ORTHO05D020284 1.6e-07 61.2 35 82.9
Lsat_1_v5_gn_5_137761 Lactuca sativa HOM05D002370 ORTHO05D020284 1.0e-06 58.5 32 84.4


User provided reference genes

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