Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 7.0e-126 454.1 260 100.0
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 7.4e-83 311.2 225 76.9
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 4.5e-72 275.4 207 76.3
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 2.9e-71 272.7 224 69.2
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 4.5e-64 248.8 225 64.9
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 2.5e-62 243.0 238 64.3
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 2.3e-60 236.5 238 63.0
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 5.7e-59 231.9 237 62.0
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 5.7e-59 231.9 215 66.0
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 2.8e-58 229.6 228 64.0
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 1.1e-57 227.6 225 63.6
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 3.1e-57 226.1 260 58.1
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 9.1e-57 224.6 276 49.6
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 1.2e-56 224.2 213 64.3
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 1.5e-56 223.8 232 61.6
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 2.0e-56 223.4 230 62.2
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 2.6e-56 223.0 228 61.8
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 4.5e-56 222.2 229 62.4
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 5.9e-56 221.9 222 62.6
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 5.9e-56 221.9 227 61.7
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.0e-55 221.1 224 62.1
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 1.7e-55 220.3 265 51.3
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.7e-55 220.3 227 61.7
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 2.9e-55 219.5 224 62.1
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 3.8e-55 219.2 264 51.5
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 5.0e-55 218.8 205 62.9
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 6.5e-55 218.4 233 60.5
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 8.5e-55 218.0 231 59.3
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.1e-54 217.6 232 58.2
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.4e-54 217.2 227 60.8
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 2.5e-54 216.5 235 59.1
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 2.5e-54 216.5 213 61.0
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 4.2e-54 215.7 264 51.1
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 7.2e-54 214.9 230 59.6
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 7.2e-54 214.9 224 58.0
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 9.4e-54 214.5 214 60.7
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 2.1e-53 213.4 234 56.0
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 1.4e-52 210.7 236 58.9
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 1.8e-52 210.3 208 58.7
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 2.3e-52 209.9 219 58.0
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 2.3e-52 209.9 218 60.1
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 3.9e-52 209.1 239 58.2
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 6.7e-52 208.4 265 52.5
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 4.4e-51 205.7 270 49.6
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 4.4e-51 205.7 260 52.7
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 7.4e-51 204.9 219 60.7
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 6.3e-50 201.8 220 58.2
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 9.1e-49 198.0 210 57.1
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 2.0e-48 196.8 227 54.6
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 2.6e-48 196.4 236 56.4
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 2.6e-48 196.4 254 52.4
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 5.9e-48 195.3 247 52.6
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 7.7e-48 194.9 228 55.3
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 1.3e-47 194.1 236 55.5
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 2.2e-47 193.4 209 60.3
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 2.9e-47 193.0 216 58.3
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 3.8e-47 192.6 215 53.5
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 3.8e-47 192.6 226 54.9
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 1.5e-46 190.7 230 53.5
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 2.5e-46 189.9 249 49.4
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 2.5e-46 189.9 232 53.4
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 2.5e-46 189.9 236 55.1
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 5.5e-46 188.7 236 53.4
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 7.2e-46 188.3 243 51.4
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 1.2e-45 187.6 226 56.6
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 2.7e-45 186.4 231 53.7
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 8.0e-45 184.9 202 55.4
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 1.4e-44 184.1 222 54.1
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 2.3e-44 183.3 230 50.9
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 3.0e-44 183.0 275 46.9
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 4.0e-44 182.6 213 55.4
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 5.2e-44 182.2 188 58.5
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 1.2e-43 181.0 218 53.2
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 2.0e-43 180.3 245 49.8
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 7.5e-43 178.3 252 50.4
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 9.7e-43 177.9 231 53.2
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 9.7e-43 177.9 230 52.2
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 1.3e-42 177.6 199 54.3
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 2.2e-42 176.8 245 49.4
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 6.3e-42 175.3 235 49.4
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 3.1e-41 172.9 211 52.1
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 5.3e-41 172.2 203 51.7
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 2.0e-40 170.2 222 51.8
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 2.7e-40 169.9 234 50.9
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 3.5e-40 169.5 214 50.0
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 5.0e-39 165.6 227 48.9
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 8.5e-39 164.9 149 67.1
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 1.1e-38 164.5 224 49.6
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 1.1e-38 164.5 175 58.3
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 5.5e-38 162.2 329 40.1
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 7.2e-38 161.8 219 48.9
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 1.2e-37 161.0 231 46.3
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 2.7e-37 159.8 230 47.8
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 4.7e-37 159.1 218 50.5
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 1.8e-36 157.1 225 47.6
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 1.8e-36 157.1 211 48.3
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 3.0e-36 156.4 222 47.3
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 4.0e-36 156.0 236 45.8
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 6.8e-36 155.2 148 63.5
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 7.5e-35 151.8 204 50.5
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 3.7e-34 149.4 203 48.3
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 3.7e-34 149.4 223 47.1
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 3.7e-34 149.4 223 47.1
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 8.3e-34 148.3 233 44.6
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 1.1e-33 147.9 221 45.7
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 1.4e-33 147.5 226 47.3
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 7.0e-33 145.2 193 50.8
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 2.7e-32 143.3 200 46.5
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 4.5e-32 142.5 209 44.5
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 1.3e-31 141.0 236 47.0
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 1.7e-31 140.6 267 40.8
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 3.8e-31 139.4 175 52.6
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 1.9e-30 137.1 149 57.7
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 3.3e-30 136.3 250 41.6
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 1.4e-28 131.0 255 40.8
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 2.6e-27 126.7 229 44.1
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 1.7e-26 124.0 237 40.1
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 2.8e-26 123.2 162 48.8
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 2.8e-26 123.2 151 51.7
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 3.7e-26 122.9 174 46.0
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 1.8e-25 120.6 174 49.4
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 4.1e-25 119.4 196 41.3
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 7.0e-25 118.6 193 44.0
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 1.0e-23 114.8 280 35.0
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 2.3e-23 113.6 196 41.3
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 2.3e-23 113.6 196 41.3
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 1.5e-22 110.9 174 43.1
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 1.5e-22 110.9 174 43.1
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 5.6e-22 109.0 234 37.2
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 9.5e-22 108.2 174 45.4
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 9.5e-22 108.2 112 62.5
TPR.G22787 Trifolium pratense HOM05D003513 ORTHO05D004660 3.6e-21 106.3 135 52.6
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 1.0e-20 104.8 194 40.2
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 1.8e-20 104.0 151 49.7
BcaB02g10961 Brassica carinata HOM05D003513 ORTHO05D004660 4.0e-20 102.8 91 61.5
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 5.2e-20 102.4 73 74.0
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 8.9e-20 101.7 160 46.9
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 1.2e-19 101.3 190 40.5
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 5.8e-19 99.0 192 40.6
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 7.5e-19 98.6 172 44.2
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 4.9e-18 95.9 165 44.8
Phvul.006G197800 Phaseolus vulgaris HOM05D003513 ORTHO05D004660 1.1e-17 94.7 179 40.8
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 1.8e-17 94.0 172 42.4
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 7.0e-17 92.0 152 44.1
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 1.2e-16 91.3 167 41.3
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 1.2e-16 91.3 164 40.2
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 1.6e-16 90.9 161 44.7
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 8.6e-15 85.1 167 40.1
A08p11320 Brassica napus HOM05D003513 ORTHO05D004660 1.1e-14 84.7 63 68.3
A10p16400 Brassica napus HOM05D003513 ORTHO05D004660 1.1e-14 84.7 63 68.3
C06p15560 Brassica napus HOM05D003513 ORTHO05D004660 1.1e-14 84.7 63 68.3
C08p23080 Brassica napus HOM05D003513 ORTHO05D004660 1.1e-14 84.7 63 68.3
BraA09t38150Z Brassica rapa HOM05D003513 ORTHO05D004660 1.9e-14 84.0 61 70.5
A03p66860 Brassica napus HOM05D003513 ORTHO05D004660 4.3e-14 82.8 60 70.0
C06p18710 Brassica napus HOM05D003513 ORTHO05D004660 4.3e-14 82.8 62 67.7
A09p33590 Brassica napus HOM05D003513 ORTHO05D004660 7.3e-14 82.0 56 75.0
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 2.1e-13 80.5 56 73.2
TWI59G0638 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 2.3e-12 77.0 90 53.3
Gohir.A01G179633 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.2e-11 74.7 51 74.5
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 2.0e-11 73.9 54 70.4
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 3.4e-11 73.2 139 40.3
TAR636G1841 Trochodendron aralioides HOM05D003513 ORTHO05D004660 2.2e-10 70.5 93 49.5
Gorai.002G212100 Gossypium raimondii HOM05D003513 ORTHO05D004660 2.9e-10 70.1 51 72.5
A05p23280 Brassica napus HOM05D003513 ORTHO05D004660 1.4e-09 67.8 51 66.7
BraA05t21192Z Brassica rapa HOM05D003513 ORTHO05D004660 1.4e-09 67.8 51 66.7
BcaC09g52177 Brassica carinata HOM05D003513 ORTHO05D004660 8.6e-07 58.5 103 40.8
Gohir.A10G119000 Gossypium hirsutum HOM05D001046 ORTHO05D005883 8.6e-07 58.5 76 50.0
Dinv09506 Davidia involucrata HOM05D003513 ORTHO05D004660 1.5e-06 57.8 72 51.4


User provided reference genes

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