Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 0.0e+00 1375.5 755 100.0
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 1.2e-237 827.0 758 67.5
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 3.6e-231 805.4 755 66.5
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 6.6e-217 758.1 758 63.9
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 7.4e-200 701.4 668 66.3
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 7.7e-165 585.1 730 54.0
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.5e-163 580.1 764 53.4
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 5.2e-161 572.4 737 53.3
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 8.8e-161 571.6 734 53.0
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 8.8e-161 571.6 734 53.0
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 5.5e-155 552.4 804 49.8
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 7.0e-150 535.4 695 52.5
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 6.5e-148 528.9 729 50.3
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 1.6e-146 524.2 731 50.5
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 1.2e-144 518.1 766 49.5
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 2.8e-143 513.5 732 49.2
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 5.9e-141 505.8 731 48.7
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 8.6e-140 501.9 730 47.5
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 3.6e-138 496.5 553 57.3
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 1.8e-137 494.2 738 46.6
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 2.2e-135 487.3 704 50.7
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 7.0e-134 482.3 685 51.2
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 1.1e-131 474.9 730 47.8
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 4.4e-128 463.0 790 45.2
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 1.0e-124 451.8 740 44.7
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 2.3e-124 450.7 761 45.1
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 1.5e-123 448.0 772 43.9
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 7.5e-120 435.6 766 42.3
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 3.2e-118 430.3 730 43.8
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 1.6e-117 427.9 735 44.5
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.3e-116 424.1 749 43.3
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 8.6e-116 422.2 835 42.5
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 3.3e-115 420.2 734 42.9
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 4.3e-115 419.9 563 51.0
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 9.5e-115 418.7 725 42.3
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 8.1e-114 415.6 646 44.9
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 4.0e-113 413.3 762 42.0
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 5.2e-113 412.9 771 40.5
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 1.7e-111 407.9 549 50.3
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 4.6e-109 399.8 727 42.8
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.0e-108 398.7 758 41.8
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 2.5e-107 394.0 726 42.6
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 9.5e-107 392.1 729 41.8
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 1.6e-106 391.3 736 41.7
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 2.1e-106 391.0 771 40.9
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 2.1e-106 391.0 633 43.8
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 4.0e-105 386.7 727 40.4
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 7.6e-104 382.5 820 38.2
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 1.0e-100 372.1 734 41.3
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 5.6e-99 366.3 815 38.4
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 2.4e-97 360.9 740 38.8
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 6.9e-97 359.4 730 40.5
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 4.4e-96 356.7 746 37.8
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 5.8e-96 356.3 755 37.9
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 4.9e-95 353.2 517 47.2
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 2.4e-94 350.9 821 38.0
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 5.4e-94 349.7 759 39.1
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 1.2e-93 348.6 728 39.6
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 1.2e-93 348.6 719 40.1
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 2.7e-93 347.4 735 37.6
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 4.6e-93 346.7 740 39.2
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 6.0e-93 346.3 749 38.5
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 8.7e-92 342.4 745 38.1
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 1.3e-90 338.6 748 38.4
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 6.2e-90 336.3 739 39.2
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 9.9e-88 328.9 741 36.3
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 4.2e-86 323.6 741 36.0
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 1.3e-84 318.5 651 41.0
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 1.3e-84 318.5 753 38.4
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 2.1e-82 311.2 740 36.9
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 9.9e-80 302.4 572 42.0
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 3.8e-79 300.4 651 38.2
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 6.4e-79 299.7 743 35.9
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 8.4e-79 299.3 672 39.4
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 1.6e-77 295.0 735 36.2
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 3.5e-77 293.9 637 38.8
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 4.6e-77 293.5 670 37.5
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 3.0e-76 290.8 547 41.3
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 3.9e-76 290.4 554 40.3
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 1.9e-75 288.1 814 32.8
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 9.6e-75 285.8 753 35.7
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 1.3e-74 285.4 755 35.8
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 1.8e-73 281.6 722 37.0
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 2.4e-73 281.2 736 35.1
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 2.6e-72 277.7 736 35.3
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 2.6e-72 277.7 739 35.9
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 1.3e-71 275.4 736 35.2
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 3.8e-71 273.9 735 36.7
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 1.1e-70 272.3 839 32.5
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 1.9e-70 271.6 772 34.8
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 4.2e-70 270.4 720 34.9
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 9.3e-70 269.2 608 37.8
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 1.6e-69 268.5 779 34.7
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 4.6e-69 266.9 769 35.2
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 3.9e-68 263.8 775 36.3
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 2.5e-67 261.2 778 34.6
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 2.5e-67 261.2 573 38.4
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 1.3e-66 258.8 734 35.1
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 8.2e-66 256.1 248 58.5
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 2.6e-64 251.1 763 35.1
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 1.1e-62 245.7 728 34.2
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 1.9e-62 245.0 243 55.1
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 2.5e-62 244.6 732 33.9
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 9.4e-62 242.7 269 49.8
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 9.4e-62 242.7 197 65.5
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 1.0e-60 239.2 756 31.3
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 6.9e-57 226.5 413 46.5
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 9.1e-57 226.1 355 43.9
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 8.8e-52 209.5 530 35.7
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 8.2e-50 203.0 522 35.8
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 1.3e-42 179.1 740 31.9
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 5.9e-40 170.2 724 29.4
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 1.5e-38 165.6 548 32.5
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 3.2e-38 164.5 709 30.2
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 1.3e-34 152.5 526 31.0
CSS0049071 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.4e-33 148.3 419 34.8
CSS0009679 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.7e-32 144.8 393 35.6
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 1.0e-31 142.9 116 69.8
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 1.1e-30 139.4 649 27.7
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 2.5e-30 138.3 105 66.7
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 3.2e-30 137.9 182 47.8
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 1.2e-29 136.0 552 27.7
Prupe.8G157000 Prunus persica HOM05D004882 ORTHO05D005551 1.3e-18 99.4 176 43.2
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 6.3e-18 97.1 74 63.5
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 8.3e-18 96.7 164 45.1
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 1.9e-14 85.5 92 46.7
CSS0001570 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.6e-13 82.4 174 42.0
TAR381G0477 Trochodendron aralioides HOM05D004882 ORTHO05D005551 1.2e-11 76.3 80 60.0
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 3.4e-11 74.7 69 55.1
vmacro01916 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 2.9e-10 71.6 145 38.6
HanXRQChr10g0297671 Helianthus annuus HOM05D004882 ORTHO05D005551 4.9e-10 70.9 121 38.0
SHI04902 Sapria himalayana HOM05D004882 ORTHO05D005551 1.0e-07 63.2 42 66.7
BolC8t48423H Brassica oleracea HOM05D004882 ORTHO05D005551 1.7e-07 62.4 88 45.5
Zm00001eb205120 Zea mays HOM05D004882 ORTHO05D005551 1.7e-07 62.4 125 37.6
Nn5g30227 Nelumbo nucifera HOM05D004882 ORTHO05D005551 2.3e-07 62.0 46 69.6
VMungo0647G2224 Vigna mungo HOM05D004882 ORTHO05D005551 5.0e-07 60.8 166 35.5
SEGI_28562 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 8.6e-07 60.1 46 52.2
SEGI_06913 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 1.1e-06 59.7 46 54.3


User provided reference genes

Program Settings