Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p022902 Quercus lobata HOM05D003001 ORTHO05D003494 3.5e-68 261.5 136 100.0
Cfa005658 Carpinus fangiana HOM05D003001 ORTHO05D003494 3.7e-25 118.6 160 53.1
CiPaw.05G032800 Carya illinoinensis HOM05D003001 ORTHO05D003494 1.8e-24 116.3 147 52.4
Cfa005653 Carpinus fangiana HOM05D003001 ORTHO05D003494 2.0e-23 112.8 160 51.2
Hma1.2p1_0784F.1_g217160 Hydrangea macrophylla HOM05D003001 ORTHO05D003494 2.6e-23 112.5 151 47.7
Hma1.2p1_0784F.1_g217165 Hydrangea macrophylla HOM05D003001 ORTHO05D003494 2.6e-23 112.5 151 47.7
Actinidia04409 Actinidia chinensis HOM05D003001 ORTHO05D003494 1.0e-22 110.5 147 48.3
TAR628G0470 Trochodendron aralioides HOM05D003001 ORTHO05D003494 3.8e-22 108.6 157 49.7
vmacro19944 Vaccinium macrocarpon HOM05D003001 ORTHO05D003494 6.5e-22 107.8 115 49.6
Rhsim05G0104000 Rhododendron simsii HOM05D003001 ORTHO05D003494 1.4e-21 106.7 97 54.6
CSS0018204 Camellia sinensis var. sinensis HOM05D003001 ORTHO05D003494 1.9e-21 106.3 98 56.1
CSS0037292 Camellia sinensis var. sinensis HOM05D003001 ORTHO05D003494 1.9e-21 106.3 98 56.1
Potri.007G096900 Populus trichocarpa HOM05D003001 ORTHO05D003494 2.5e-21 105.9 150 46.7
CSS0047331 Camellia sinensis var. sinensis HOM05D003001 ORTHO05D003494 6.1e-20 101.3 93 55.9
Sabra07G0080200 Salix brachista HOM05D003001 ORTHO05D003494 5.1e-19 98.2 150 45.3
Prupe.6G193100 Prunus persica HOM05D003001 ORTHO05D003494 8.8e-19 97.4 122 45.9
CiPaw.03G145700 Carya illinoinensis HOM05D003001 ORTHO05D003494 1.9e-18 96.3 107 51.4
RcHm_v2.0_Chr2g0112391 Rosa chinensis HOM05D003001 ORTHO05D003494 5.7e-18 94.7 124 46.0
FAN28G1326 Fragaria x ananassa HOM05D003001 ORTHO05D003494 1.3e-17 93.6 124 47.6
CANSAT01G1533 Cannabis sativa HOM05D003001 ORTHO05D003494 1.7e-17 93.2 116 46.6
FAN26G0078 Fragaria x ananassa HOM05D003001 ORTHO05D003494 1.7e-17 93.2 117 48.7
MD15G1320200 Malus domestica HOM05D003001 ORTHO05D003494 2.8e-17 92.4 129 41.9
GSVIVG01003429001 Vitis vinifera HOM05D003001 ORTHO05D003494 2.8e-17 92.4 140 44.3
QL06p048139 Quercus lobata HOM05D003001 ORTHO05D003494 3.7e-17 92.0 127 46.5
PSO210G4835 Papaver somniferum HOM05D003001 ORTHO05D003494 1.1e-16 90.5 113 48.7
Thecc.02G134100 Theobroma cacao HOM05D003001 ORTHO05D003494 1.4e-16 90.1 143 42.7
Gohir.D12G016200 Gossypium hirsutum HOM05D003001 ORTHO05D003494 4.1e-16 88.6 132 41.7
FAN23G1555 Fragaria x ananassa HOM05D003001 ORTHO05D003494 6.9e-16 87.8 124 46.0
MBI06_g22321_MAGBIO Magnolia biondii HOM05D003001 ORTHO05D003494 9.1e-16 87.4 122 45.9
Manes.13G096600 Manihot esculenta HOM05D003001 ORTHO05D003494 9.1e-16 87.4 116 51.7
Medtr3g086840 Medicago truncatula HOM05D003001 ORTHO05D003494 9.1e-16 87.4 92 53.3
Gorai.008G016400 Gossypium raimondii HOM05D003001 ORTHO05D003494 1.2e-15 87.0 132 40.9
Atru.chr3.1345 Acer truncatum HOM05D003001 ORTHO05D003494 1.5e-15 86.7 132 48.5
Ca_16510_v3 Cicer arietinum L. HOM05D003001 ORTHO05D003494 1.5e-15 86.7 138 40.6
Haze_24852 Corylus avellana HOM05D003001 ORTHO05D003494 1.5e-15 86.7 120 46.7
FvH4_1g20250 Fragaria vesca HOM05D003001 ORTHO05D003494 2.0e-15 86.3 117 47.0
Cfa002601 Carpinus fangiana HOM05D003001 ORTHO05D003494 2.6e-15 85.9 123 47.2
Glyma.11G242000 Glycine max HOM05D003001 ORTHO05D003494 4.5e-15 85.1 123 43.1
Actinidia28043 Actinidia chinensis HOM05D003001 ORTHO05D003494 5.9e-15 84.7 73 61.6
MSTRG.3756 Avicennia marina HOM05D003001 ORTHO05D003494 5.9e-15 84.7 88 50.0
TAR625G1497 Trochodendron aralioides HOM05D003001 ORTHO05D003494 5.9e-15 84.7 132 47.0
SalBow5G0007 Salvia bowleyana HOM05D003001 ORTHO05D003494 1.0e-14 84.0 94 50.0
SalBow5G4959 Salvia bowleyana HOM05D003001 ORTHO05D003494 1.0e-14 84.0 94 50.0
FAN19G2704 Fragaria x ananassa HOM05D003001 ORTHO05D003494 1.3e-14 83.6 117 46.2
Glyma.18G015100 Glycine max HOM05D003001 ORTHO05D003494 1.3e-14 83.6 123 41.5
Gohir.A12G015900 Gossypium hirsutum HOM05D003001 ORTHO05D003494 1.3e-14 83.6 137 40.1
SGA_v2.0_scaffold335G49098 Striga asiatica HOM05D003001 ORTHO05D003494 1.7e-14 83.2 112 47.3
Migut.L00160 Erythranthe guttata HOM05D003001 ORTHO05D003494 2.2e-14 82.8 97 51.5
Nn5g30003 Nelumbo nucifera HOM05D003001 ORTHO05D003494 2.2e-14 82.8 147 40.1
Thecc.01G095700 Theobroma cacao HOM05D003001 ORTHO05D003494 2.2e-14 82.8 143 44.1
TPR.G16016 Trifolium pratense HOM05D003001 ORTHO05D003494 2.2e-14 82.8 137 40.9
COL.COLO4_32311 Corchorus olitorius HOM05D003001 ORTHO05D003494 3.8e-14 82.0 141 41.8
Haze_10579 Corylus avellana HOM05D003001 ORTHO05D003494 3.8e-14 82.0 129 49.6
Duzib147G0326 Durio zibethinus HOM05D003001 ORTHO05D003494 3.8e-14 82.0 152 43.4
SHI21933 Sapria himalayana HOM05D003001 ORTHO05D003494 3.8e-14 82.0 111 49.5
Duzib187G0783 Durio zibethinus HOM05D003001 ORTHO05D003494 5.0e-14 81.6 123 43.1
Hund14102 Selenicereus undatus HOM05D003001 ORTHO05D003494 5.0e-14 81.6 111 45.9
Psat5g090840 Pisum sativum HOM05D003001 ORTHO05D003494 8.5e-14 80.9 138 40.6
Potri.005G072100 Populus trichocarpa HOM05D003001 ORTHO05D003494 8.5e-14 80.9 139 38.8
Aqoxy6G00717 Aquilegia oxysepala HOM05D003001 ORTHO05D003494 1.1e-13 80.5 122 41.8
DCAR_001772 Daucus carota HOM05D003001 ORTHO05D003494 1.1e-13 80.5 102 43.1
Manes.12G130000 Manihot esculenta HOM05D003001 ORTHO05D003494 1.1e-13 80.5 108 51.9
Ah.02g126200 Amaranthus hybridus HOM05D003001 ORTHO05D003494 1.4e-13 80.1 99 47.5
Nitab4.5_0012818g0020 Nicotiana tabacum HOM05D003001 ORTHO05D003494 1.4e-13 80.1 96 49.0
Cc02_g21190 Coffea canephora HOM05D003001 ORTHO05D003494 1.9e-13 79.7 153 41.2
Hma1.2p1_0019F.1_g013790 Hydrangea macrophylla HOM05D003001 ORTHO05D003494 1.9e-13 79.7 112 44.6
TWI74G1411 Tripterygium wilfordii HOM05D003001 ORTHO05D003494 1.9e-13 79.7 129 43.4
Glyma.08G070500 Glycine max HOM05D003001 ORTHO05D003494 3.2e-13 79.0 116 41.4
Lj5A234T86 Lonicera japonica HOM05D003001 ORTHO05D003494 4.2e-13 78.6 125 42.4
ClCG01G018590 Citrullus lanatus HOM05D003001 ORTHO05D003494 5.5e-13 78.2 138 39.1
MBI02_g33225_MAGBIO Magnolia biondii HOM05D003001 ORTHO05D003494 5.5e-13 78.2 89 51.7
Nn1g05454 Nelumbo nucifera HOM05D003001 ORTHO05D003494 5.5e-13 78.2 113 44.2
MSTRG.15725 Avicennia marina HOM05D003001 ORTHO05D003494 7.2e-13 77.8 101 48.5
MD01G1035600 Malus domestica HOM05D003001 ORTHO05D003494 7.2e-13 77.8 119 42.0
DCAR_003462 Daucus carota HOM05D003001 ORTHO05D003494 9.4e-13 77.4 97 51.5
DCAR_003467 Daucus carota HOM05D003001 ORTHO05D003494 9.4e-13 77.4 97 51.5
vmacro18579 Vaccinium macrocarpon HOM05D003001 ORTHO05D003494 9.4e-13 77.4 155 38.1
Lj6g0000592 Lotus japonicus HOM05D003001 ORTHO05D003494 1.2e-12 77.0 124 41.1
VMungo0251G0868 Vigna mungo HOM05D003001 ORTHO05D003494 1.2e-12 77.0 136 40.4
Gohir.A11G204500 Gossypium hirsutum HOM05D003001 ORTHO05D003494 1.6e-12 76.6 138 39.1
PGR004G1126 Punica granatum HOM05D003001 ORTHO05D003494 1.6e-12 76.6 127 40.9
EL10As13g24055 Beta vulgaris HOM05D003001 ORTHO05D003494 2.7e-12 75.9 97 44.3
ECA236G2627 Erigeron canadensis HOM05D003001 ORTHO05D003494 3.6e-12 75.5 63 54.0
Oeu012395.2 Olea europaea HOM05D003001 ORTHO05D003494 3.6e-12 75.5 125 41.6
TWI53G0751 Tripterygium wilfordii HOM05D003001 ORTHO05D003494 3.6e-12 75.5 140 38.6
Eucgr.I00540 Eucalyptus grandis HOM05D003001 ORTHO05D003494 4.7e-12 75.1 138 39.1
Glyma.08G133200 Glycine max HOM05D003001 ORTHO05D003494 4.7e-12 75.1 123 41.5
Gorai.007G235000 Gossypium raimondii HOM05D003001 ORTHO05D003494 6.1e-12 74.7 126 41.3
PGSC0003DMG400016802 Solanum tuberosum HOM05D003001 ORTHO05D003494 6.1e-12 74.7 98 46.9
Phvul.002G260900 Phaseolus vulgaris HOM05D003001 ORTHO05D003494 7.9e-12 74.3 136 42.6
CAN.G712.16 Capsicum annuum HOM05D003001 ORTHO05D003494 1.0e-11 73.9 97 46.4
Gohir.D11G218900 Gossypium hirsutum HOM05D003001 ORTHO05D003494 1.0e-11 73.9 126 41.3
Phvul.002G210800 Phaseolus vulgaris HOM05D003001 ORTHO05D003494 1.0e-11 73.9 101 45.5
Sed0022187 Sechium edule HOM05D003001 ORTHO05D003494 1.4e-11 73.6 96 43.8
Ciclev10024998m.g Citrus clementina HOM05D003001 ORTHO05D003494 1.8e-11 73.2 150 38.0
Rhsim08G0013400 Rhododendron simsii HOM05D003001 ORTHO05D003494 1.8e-11 73.2 134 38.8
Gohir.A03G175300 Gossypium hirsutum HOM05D003001 ORTHO05D003494 2.3e-11 72.8 124 40.3
Lalb_Chr05g0217601 Lupinus albus HOM05D003001 ORTHO05D003494 3.0e-11 72.4 93 43.0
Lalb_Chr11g0075461 Lupinus albus HOM05D003001 ORTHO05D003494 3.9e-11 72.0 124 44.4
Sp2g28400 Schrenkiella parvula HOM05D003001 ORTHO05D003494 3.9e-11 72.0 101 42.6
DCAR_014204 Daucus carota HOM05D003001 ORTHO05D003494 5.1e-11 71.6 121 41.3
Sed0027008 Sechium edule HOM05D003001 ORTHO05D003494 5.1e-11 71.6 141 34.8
Solyc05g051490.3 Solanum lycopersicum HOM05D003001 ORTHO05D003494 5.1e-11 71.6 98 45.9
Sopen05g029900 Solanum pennellii HOM05D003001 ORTHO05D003494 5.1e-11 71.6 98 45.9
arahy.Tifrunner.gnm1.ann1.U0JFG5 Arachis hypogaea HOM05D003001 ORTHO05D003494 6.7e-11 71.2 95 42.1
CAN.G523.42 Capsicum annuum HOM05D003001 ORTHO05D003494 6.7e-11 71.2 84 41.7
Ca_08989_v3 Cicer arietinum L. HOM05D003001 ORTHO05D003494 6.7e-11 71.2 133 38.3
Gohir.D02G198900 Gossypium hirsutum HOM05D003001 ORTHO05D003494 6.7e-11 71.2 128 36.7
Gorai.005G222800 Gossypium raimondii HOM05D003001 ORTHO05D003494 6.7e-11 71.2 128 36.7
Lsat_1_v5_gn_7_82321 Lactuca sativa HOM05D003001 ORTHO05D003494 6.7e-11 71.2 91 44.0
Oeu032368.1 Olea europaea HOM05D003001 ORTHO05D003494 6.7e-11 71.2 121 38.8
Peaxi162Scf01060g00143 Petunia axillaris HOM05D003001 ORTHO05D003494 6.7e-11 71.2 134 35.1
arahy.Tifrunner.gnm1.ann1.ZFLJ4E Arachis hypogaea HOM05D003001 ORTHO05D003494 8.8e-11 70.9 117 40.2
THA.LOC104798827 Tarenaya hassleriana HOM05D003001 ORTHO05D003494 8.8e-11 70.9 116 38.8
arahy.Tifrunner.gnm1.ann1.7RAE92 Arachis hypogaea HOM05D003001 ORTHO05D003494 1.5e-10 70.1 117 40.2
Cc07_g14610 Coffea canephora HOM05D003001 ORTHO05D003494 1.5e-10 70.1 149 36.2
CsaV3_6G045250 Cucumis sativus L. HOM05D003001 ORTHO05D003494 2.0e-10 69.7 103 39.8
Hund16554 Selenicereus undatus HOM05D003001 ORTHO05D003494 2.0e-10 69.7 110 41.8
MELO3C007738.2 Cucumis melo HOM05D003001 ORTHO05D003494 2.6e-10 69.3 103 39.8
Lj2A540G45 Lonicera japonica HOM05D003001 ORTHO05D003494 3.3e-10 68.9 78 46.2
Nitab4.5_0003959g0040 Nicotiana tabacum HOM05D003001 ORTHO05D003494 3.3e-10 68.9 137 34.3
ATR0684G162 Amborella trichopoda HOM05D003001 ORTHO05D003494 4.4e-10 68.6 153 39.9
Nitab4.5_0000863g0110 Nicotiana tabacum HOM05D003001 ORTHO05D003494 4.4e-10 68.6 132 32.6
Lalb_Chr07g0185321 Lupinus albus HOM05D003001 ORTHO05D003494 5.7e-10 68.2 106 48.1
Sabra05G0059000 Salix brachista HOM05D003001 ORTHO05D003494 5.7e-10 68.2 141 37.6
Lj4g0024063 Lotus japonicus HOM05D003001 ORTHO05D003494 9.7e-10 67.4 113 40.7
Peaxi162Scf00044g01218 Petunia axillaris HOM05D003001 ORTHO05D003494 9.7e-10 67.4 95 44.2
Lj4g0023349 Lotus japonicus HOM05D003001 ORTHO05D003494 2.2e-09 66.2 108 41.7
PGSC0003DMG400012573 Solanum tuberosum HOM05D003001 ORTHO05D003494 2.2e-09 66.2 85 38.8
Sopen01g047980 Solanum pennellii HOM05D003001 ORTHO05D003494 2.8e-09 65.9 136 32.4
Thhalv10003703m.g Eutrema salsugineum HOM05D003001 ORTHO05D003494 4.8e-09 65.1 110 37.3
Psat7g100360 Pisum sativum HOM05D003001 ORTHO05D003494 6.3e-09 64.7 106 41.5
AUR62003263 Chenopodium quinoa HOM05D003001 ORTHO05D003494 8.2e-09 64.3 92 43.5
Ca_18366_v3 Cicer arietinum L. HOM05D003001 ORTHO05D003494 8.2e-09 64.3 106 38.7
unitig_61.g26059 Utricularia gibba HOM05D003001 ORTHO05D003494 8.2e-09 64.3 68 45.6
A06p32150 Brassica napus HOM05D003001 ORTHO05D003494 1.4e-08 63.5 78 44.9
BraA06t26143Z Brassica rapa HOM05D003001 ORTHO05D003494 1.4e-08 63.5 101 40.6
Psat7g056400 Pisum sativum HOM05D003001 ORTHO05D003494 1.4e-08 63.5 85 41.2
HPP92_011196 Vanilla planifolia HOM05D003001 ORTHO05D003494 1.4e-08 63.5 97 41.2
Aa31LG1G16660 Aethionema arabicum HOM05D003001 ORTHO05D003494 1.8e-08 63.2 101 36.6
AL8G42860 Arabidopsis lyrata HOM05D003001 ORTHO05D003494 1.8e-08 63.2 77 45.5
arahy.Tifrunner.gnm1.ann1.FN9T2Y Arachis hypogaea HOM05D003001 ORTHO05D003494 1.8e-08 63.2 95 38.9
BcaC03g18323 Brassica carinata HOM05D003001 ORTHO05D003494 1.8e-08 63.2 80 45.0
C02p63980 Brassica napus HOM05D003001 ORTHO05D003494 1.8e-08 63.2 80 45.0
BolC2t12465H Brassica oleracea HOM05D003001 ORTHO05D003494 1.8e-08 63.2 80 45.0
C03p60790 Brassica napus HOM05D003001 ORTHO05D003494 2.4e-08 62.8 105 37.1
TPR.G2848 Trifolium pratense HOM05D003001 ORTHO05D003494 2.4e-08 62.8 85 43.5
TPR.G6243 Trifolium pratense HOM05D003001 ORTHO05D003494 2.4e-08 62.8 91 42.9
Carub.0008s2617 Capsella rubella HOM05D003001 ORTHO05D003494 3.1e-08 62.4 77 42.9
Solyc01g105510.3 Solanum lycopersicum HOM05D003001 ORTHO05D003494 3.1e-08 62.4 136 31.6
HPP92_011190 Vanilla planifolia HOM05D003001 ORTHO05D003494 4.1e-08 62.0 97 40.2
Zm00001eb255460 Zea mays HOM05D003001 ORTHO05D003494 7.0e-08 61.2 134 34.3
Medtr8g089925 Medicago truncatula HOM05D003001 ORTHO05D003494 9.1e-08 60.8 92 42.4
AT5G65290 Arabidopsis thaliana HOM05D003001 ORTHO05D003494 1.2e-07 60.5 76 42.1
A02p43820 Brassica napus HOM05D003001 ORTHO05D003494 1.2e-07 60.5 79 44.3
BolC3t18338H Brassica oleracea HOM05D003001 ORTHO05D003494 1.2e-07 60.5 95 40.0
BraA02t09307Z Brassica rapa HOM05D003001 ORTHO05D003494 1.2e-07 60.5 79 44.3
Zm00001eb193930 Zea mays HOM05D003001 ORTHO05D003494 1.2e-07 60.5 138 33.3
CARHR279250 Cardamine hirsuta HOM05D003001 ORTHO05D003494 1.5e-07 60.1 105 38.1
unitig_748.g8484 Utricularia gibba HOM05D003001 ORTHO05D003494 1.5e-07 60.1 144 34.0
BcaB02g09889 Brassica carinata HOM05D003001 ORTHO05D003494 3.4e-07 58.9 77 45.5
Lsat_1_v5_gn_9_116840 Lactuca sativa HOM05D003001 ORTHO05D003494 4.5e-07 58.5 115 39.1
VMungo0251G0124 Vigna mungo HOM05D003001 ORTHO05D003494 7.7e-07 57.8 66 45.5
Medtr4g094110 Medicago truncatula HOM05D003001 ORTHO05D003494 1.0e-06 57.4 77 40.3
HanXRQChr13g0420801 Helianthus annuus HOM05D003001 ORTHO05D003494 1.3e-06 57.0 72 47.2
Cpa.g.sc55.75 Carica papaya HOM05D003001 ORTHO05D003494 1.7e-06 56.6 80 45.0
Lsat_1_v5_gn_5_45321 Lactuca sativa HOM05D003001 ORTHO05D003494 2.9e-06 55.8 100 34.0
Os06g0218900 Oryza sativa ssp. japonica HOM05D003001 ORTHO05D003494 5.0e-06 55.1 132 35.6


User provided reference genes

Program Settings