Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p022576 Quercus lobata HOM05D003037 ORTHO05D003659 2.4e-53 211.8 103 100.0
QL02p100067 Quercus lobata HOM05D003037 ORTHO05D003659 1.9e-42 175.6 90 93.3
QL02p100153 Quercus lobata HOM05D003037 ORTHO05D003659 2.0e-39 165.6 90 87.8
COL.COLO4_17755 Corchorus olitorius HOM05D003037 ORTHO05D003659 1.7e-30 136.0 93 73.1
Gohir.D12G042900 Gossypium hirsutum HOM05D003037 ORTHO05D003659 1.7e-30 136.0 89 76.4
Cfa005476 Carpinus fangiana HOM05D003037 ORTHO05D003659 2.9e-30 135.2 89 78.7
Gohir.A12G043400 Gossypium hirsutum HOM05D003037 ORTHO05D003659 3.7e-30 134.8 89 74.2
Gohir.D04G175800 Gossypium hirsutum HOM05D003037 ORTHO05D003659 3.7e-30 134.8 89 75.3
Cpa.g.sc30.45 Carica papaya HOM05D003037 ORTHO05D003659 4.9e-30 134.4 94 72.3
Ciclev10004097m.g Citrus clementina HOM05D003037 ORTHO05D003659 4.9e-30 134.4 88 76.1
Gohir.A04G130600 Gossypium hirsutum HOM05D003037 ORTHO05D003659 4.9e-30 134.4 89 74.2
Manes.10G120100 Manihot esculenta HOM05D003037 ORTHO05D003659 6.4e-30 134.0 83 79.5
Thecc.02G025100 Theobroma cacao HOM05D003037 ORTHO05D003659 6.4e-30 134.0 95 71.6
CiPaw.05G051700 Carya illinoinensis HOM05D003037 ORTHO05D003659 8.3e-30 133.7 91 74.7
Gorai.012G167100 Gossypium raimondii HOM05D003037 ORTHO05D003659 1.4e-29 132.9 89 74.2
Atru.chr6.760 Acer truncatum HOM05D003037 ORTHO05D003659 1.9e-29 132.5 91 73.6
Duzib248G0822 Durio zibethinus HOM05D003037 ORTHO05D003659 1.9e-29 132.5 93 71.0
Manes.07G022900 Manihot esculenta HOM05D003037 ORTHO05D003659 1.9e-29 132.5 85 78.8
Duzib052G1010 Durio zibethinus HOM05D003037 ORTHO05D003659 3.2e-29 131.7 93 68.8
Gorai.008G044900 Gossypium raimondii HOM05D003037 ORTHO05D003659 3.2e-29 131.7 89 75.3
Sc16g0002460 Simmondsia chinensis HOM05D003037 ORTHO05D003659 1.6e-28 129.4 83 74.7
CANSAT35G1041 Cannabis sativa HOM05D003037 ORTHO05D003659 2.7e-28 128.6 83 75.9
TWI75G1787 Tripterygium wilfordii HOM05D003037 ORTHO05D003659 2.7e-28 128.6 84 73.8
CSS0012029 Camellia sinensis var. sinensis HOM05D003037 ORTHO05D003659 6.0e-28 127.5 83 78.3
CSS0041282 Camellia sinensis var. sinensis HOM05D003037 ORTHO05D003659 6.0e-28 127.5 83 78.3
TWI12G1167 Tripterygium wilfordii HOM05D003037 ORTHO05D003659 7.8e-28 127.1 84 71.4
Prupe.8G013600 Prunus persica HOM05D003037 ORTHO05D003659 1.7e-27 125.9 96 66.7
CsaV3_5G029840 Cucumis sativus L. HOM05D003037 ORTHO05D003659 2.3e-27 125.6 88 72.7
MELO3C011826.2 Cucumis melo HOM05D003037 ORTHO05D003659 3.9e-27 124.8 88 71.6
Nn4g24648 Nelumbo nucifera HOM05D003037 ORTHO05D003659 5.1e-27 124.4 96 67.7
CAN.G798.49 Capsicum annuum HOM05D003037 ORTHO05D003659 8.6e-27 123.6 83 72.3
EL10Ac6g14061 Beta vulgaris HOM05D003037 ORTHO05D003659 1.1e-26 123.2 82 75.6
PGR042G0094 Punica granatum HOM05D003037 ORTHO05D003659 1.1e-26 123.2 95 66.3
Medtr4g130680 Medicago truncatula HOM05D003037 ORTHO05D003659 1.5e-26 122.9 88 69.3
Oeu045935.1 Olea europaea HOM05D003037 ORTHO05D003659 1.5e-26 122.9 97 64.9
BcaC09g49512 Brassica carinata HOM05D003037 ORTHO05D003659 1.9e-26 122.5 86 70.9
C01p35730 Brassica napus HOM05D003037 ORTHO05D003659 1.9e-26 122.5 86 70.9
BolC1t03532H Brassica oleracea HOM05D003037 ORTHO05D003659 1.9e-26 122.5 86 70.9
Actinidia00185 Actinidia chinensis HOM05D003037 ORTHO05D003659 2.5e-26 122.1 80 77.5
ClCG11G013340 Citrullus lanatus HOM05D003037 ORTHO05D003659 2.5e-26 122.1 88 70.5
GSVIVG01023275001 Vitis vinifera HOM05D003037 ORTHO05D003659 2.5e-26 122.1 88 69.3
Dinv19397 Davidia involucrata HOM05D003037 ORTHO05D003659 3.3e-26 121.7 83 74.7
Hma1.2p1_1108F.1_g257915 Hydrangea macrophylla HOM05D003037 ORTHO05D003659 3.3e-26 121.7 84 71.4
Hma1.2p1_1108F.1_g257920 Hydrangea macrophylla HOM05D003037 ORTHO05D003659 3.3e-26 121.7 84 71.4
Nitab4.5_0000948g0100 Nicotiana tabacum HOM05D003037 ORTHO05D003659 3.3e-26 121.7 83 72.3
Solyc01g103750.4 Solanum lycopersicum HOM05D003037 ORTHO05D003659 3.3e-26 121.7 83 72.3
Sopen01g046150 Solanum pennellii HOM05D003037 ORTHO05D003659 3.3e-26 121.7 83 72.3
PGSC0003DMG400024926 Solanum tuberosum HOM05D003037 ORTHO05D003659 3.3e-26 121.7 91 68.1
QL02p100111 Quercus lobata HOM05D003037 ORTHO05D003659 4.3e-26 121.3 90 68.9
TAR624G0307 Trochodendron aralioides HOM05D003037 ORTHO05D003659 4.3e-26 121.3 88 69.3
HanXRQChr07g0187481 Helianthus annuus HOM05D003037 ORTHO05D003659 5.6e-26 120.9 102 63.7
Sed0025195 Sechium edule HOM05D003037 ORTHO05D003659 5.6e-26 120.9 80 75.0
HanXRQChr03g0065191 Helianthus annuus HOM05D003037 ORTHO05D003659 7.3e-26 120.6 83 73.5
MD10G1009700 Malus domestica HOM05D003037 ORTHO05D003659 7.3e-26 120.6 85 71.8
Rhsim11G0125200 Rhododendron simsii HOM05D003037 ORTHO05D003659 7.3e-26 120.6 83 71.1
Migut.N00833 Erythranthe guttata HOM05D003037 ORTHO05D003659 9.5e-26 120.2 83 69.9
MD05G1010900 Malus domestica HOM05D003037 ORTHO05D003659 9.5e-26 120.2 96 63.5
THA.LOC104823696 Tarenaya hassleriana HOM05D003037 ORTHO05D003659 9.5e-26 120.2 87 72.4
A01p28170 Brassica napus HOM05D003037 ORTHO05D003659 1.2e-25 119.8 86 69.8
BraA01t02947Z Brassica rapa HOM05D003037 ORTHO05D003659 1.2e-25 119.8 86 69.8
AUR62014220 Chenopodium quinoa HOM05D003037 ORTHO05D003659 1.6e-25 119.4 89 69.7
Oeu000128.2 Olea europaea HOM05D003037 ORTHO05D003659 1.6e-25 119.4 83 73.5
Sed0009851 Sechium edule HOM05D003037 ORTHO05D003659 1.6e-25 119.4 85 69.4
ECA240G1415 Erigeron canadensis HOM05D003037 ORTHO05D003659 2.1e-25 119.0 89 70.8
Lsat_1_v5_gn_9_120700 Lactuca sativa HOM05D003037 ORTHO05D003659 2.1e-25 119.0 88 68.2
PGR142G1570 Punica granatum HOM05D003037 ORTHO05D003659 2.1e-25 119.0 90 67.8
SalBow3G2424 Salvia bowleyana HOM05D003037 ORTHO05D003659 2.1e-25 119.0 91 67.0
TAR381G0039 Trochodendron aralioides HOM05D003037 ORTHO05D003659 2.1e-25 119.0 85 70.6
Ca_00048_v3 Cicer arietinum L. HOM05D003037 ORTHO05D003659 2.8e-25 118.6 92 65.2
Dinv07473 Davidia involucrata HOM05D003037 ORTHO05D003659 3.6e-25 118.2 83 68.7
C05p07880 Brassica napus HOM05D003037 ORTHO05D003659 4.7e-25 117.9 94 67.0
BolC5t29539H Brassica oleracea HOM05D003037 ORTHO05D003659 4.7e-25 117.9 94 67.0
PSO675G4829 Papaver somniferum HOM05D003037 ORTHO05D003659 4.7e-25 117.9 90 66.7
Psat1g223400 Pisum sativum HOM05D003037 ORTHO05D003659 4.7e-25 117.9 83 71.1
Eucgr.G00351 Eucalyptus grandis HOM05D003037 ORTHO05D003659 6.2e-25 117.5 98 65.3
Lsat_1_v5_gn_9_120721 Lactuca sativa HOM05D003037 ORTHO05D003659 8.1e-25 117.1 88 67.0
Thhalv10023501m.g Eutrema salsugineum HOM05D003037 ORTHO05D003659 1.1e-24 116.7 86 69.8
Lj4g0001882 Lotus japonicus HOM05D003037 ORTHO05D003659 1.4e-24 116.3 93 61.3
Sabra01G0168500 Salix brachista HOM05D003037 ORTHO05D003659 1.4e-24 116.3 97 61.9
Sp2g05490 Schrenkiella parvula HOM05D003037 ORTHO05D003659 1.4e-24 116.3 88 68.2
Ah.02g126950 Amaranthus hybridus HOM05D003037 ORTHO05D003659 1.8e-24 115.9 98 60.2
CARHR053980 Cardamine hirsuta HOM05D003037 ORTHO05D003659 1.8e-24 115.9 88 67.0
Cc02_g22990 Coffea canephora HOM05D003037 ORTHO05D003659 1.8e-24 115.9 89 67.4
A09p18570 Brassica napus HOM05D003037 ORTHO05D003659 2.4e-24 115.5 80 71.2
BraA09t37483Z Brassica rapa HOM05D003037 ORTHO05D003659 2.4e-24 115.5 80 71.2
Eucgr.G00353 Eucalyptus grandis HOM05D003037 ORTHO05D003659 2.4e-24 115.5 98 64.3
Ah.03g137100 Amaranthus hybridus HOM05D003037 ORTHO05D003659 3.1e-24 115.2 80 72.5
A06p06470 Brassica napus HOM05D003037 ORTHO05D003659 3.1e-24 115.2 88 70.5
BraA06t23858Z Brassica rapa HOM05D003037 ORTHO05D003659 3.1e-24 115.2 88 70.5
BcaC02g10704 Brassica carinata HOM05D003037 ORTHO05D003659 5.2e-24 114.4 98 65.3
C04p26910 Brassica napus HOM05D003037 ORTHO05D003659 5.2e-24 114.4 98 65.3
BolC4t24107H Brassica oleracea HOM05D003037 ORTHO05D003659 5.2e-24 114.4 98 65.3
Potri.004G222400 Populus trichocarpa HOM05D003037 ORTHO05D003659 5.2e-24 114.4 86 67.4
AT1G09795 Arabidopsis thaliana HOM05D003037 ORTHO05D003659 6.8e-24 114.0 88 65.9
Sp1g08400 Schrenkiella parvula HOM05D003037 ORTHO05D003659 6.8e-24 114.0 89 62.9
SGA_v2.0_scaffold8G04432 Striga asiatica HOM05D003037 ORTHO05D003659 6.8e-24 114.0 109 55.0
Hma1.2p1_0427F.1_g150700 Hydrangea macrophylla HOM05D003037 ORTHO05D003659 8.9e-24 113.6 76 72.4
Oeu036681.1 Olea europaea HOM05D003037 ORTHO05D003659 8.9e-24 113.6 80 71.2
PSO541G5800 Papaver somniferum HOM05D003037 ORTHO05D003659 8.9e-24 113.6 77 74.0
ECA236G0695 Erigeron canadensis HOM05D003037 ORTHO05D003659 1.2e-23 113.2 83 67.5
AL2G17980 Arabidopsis lyrata HOM05D003037 ORTHO05D003659 1.5e-23 112.8 90 66.7
AT1G58080 Arabidopsis thaliana HOM05D003037 ORTHO05D003659 1.5e-23 112.8 90 66.7
arahy.Tifrunner.gnm1.ann1.3Q8GGF Arachis hypogaea HOM05D003037 ORTHO05D003659 1.5e-23 112.8 78 71.8
arahy.Tifrunner.gnm1.ann1.Y8ZHMJ Arachis hypogaea HOM05D003037 ORTHO05D003659 1.5e-23 112.8 78 71.8
Potri.019G057200 Populus trichocarpa HOM05D003037 ORTHO05D003659 1.5e-23 112.8 62 85.5
AL1G20370 Arabidopsis lyrata HOM05D003037 ORTHO05D003659 2.0e-23 112.5 89 60.7
MSTRG.16497 Avicennia marina HOM05D003037 ORTHO05D003659 2.0e-23 112.5 83 68.7
BcaC04g22114 Brassica carinata HOM05D003037 ORTHO05D003659 2.0e-23 112.5 88 68.2
A03p66520 Brassica napus HOM05D003037 ORTHO05D003659 2.0e-23 112.5 88 65.9
C09p23190 Brassica napus HOM05D003037 ORTHO05D003659 2.0e-23 112.5 88 68.2
BolC9t55238H Brassica oleracea HOM05D003037 ORTHO05D003659 2.0e-23 112.5 88 68.2
BraA03t15703Z Brassica rapa HOM05D003037 ORTHO05D003659 2.0e-23 112.5 88 65.9
CARHR009780 Cardamine hirsuta HOM05D003037 ORTHO05D003659 2.0e-23 112.5 88 67.0
RcHm_v2.0_Chr1g0321271 Rosa chinensis HOM05D003037 ORTHO05D003659 2.0e-23 112.5 60 86.7
Thhalv10007791m.g Eutrema salsugineum HOM05D003037 ORTHO05D003659 2.6e-23 112.1 89 61.8
VMungo0540G1935 Vigna mungo HOM05D003037 ORTHO05D003659 2.6e-23 112.1 88 65.9
Carub.0002s0655 Capsella rubella HOM05D003037 ORTHO05D003659 3.4e-23 111.7 87 65.5
FvH4_7g02550 Fragaria vesca HOM05D003037 ORTHO05D003659 3.4e-23 111.7 60 86.7
FAN01G1632 Fragaria x ananassa HOM05D003037 ORTHO05D003659 3.4e-23 111.7 60 86.7
FAN03G1983 Fragaria x ananassa HOM05D003037 ORTHO05D003659 3.4e-23 111.7 60 86.7
FAN06G4382 Fragaria x ananassa HOM05D003037 ORTHO05D003659 3.4e-23 111.7 60 86.7
FAN10G2304 Fragaria x ananassa HOM05D003037 ORTHO05D003659 3.4e-23 111.7 60 86.7
Lsat_1_v5_gn_7_75321 Lactuca sativa HOM05D003037 ORTHO05D003659 3.4e-23 111.7 89 66.3
THA.LOC104816806 Tarenaya hassleriana HOM05D003037 ORTHO05D003659 3.4e-23 111.7 64 84.4
MSTRG.27854 Avicennia marina HOM05D003037 ORTHO05D003659 5.8e-23 110.9 65 78.5
BcaC06g31782 Brassica carinata HOM05D003037 ORTHO05D005835 5.8e-23 110.9 94 62.8
vmacro01725 Vaccinium macrocarpon HOM05D003037 ORTHO05D003659 5.8e-23 110.9 92 64.1
Carub.0001s0915 Capsella rubella HOM05D003037 ORTHO05D003659 7.6e-23 110.5 88 63.6
Migut.B00789 Erythranthe guttata HOM05D003037 ORTHO05D003659 7.6e-23 110.5 76 69.7
Glyma.03G176400 Glycine max HOM05D003037 ORTHO05D003659 7.6e-23 110.5 61 82.0
Phvul.006G218100 Phaseolus vulgaris HOM05D003037 ORTHO05D003659 7.6e-23 110.5 60 85.0
CDE05G2487 Ceratophyllum demersum HOM05D003037 ORTHO05D003659 1.3e-22 109.8 77 67.5
Medtr2g006040 Medicago truncatula HOM05D003037 ORTHO05D003659 1.7e-22 109.4 58 87.9
CDE11G0137 Ceratophyllum demersum HOM05D003037 ORTHO05D003659 2.2e-22 109.0 77 67.5
DCAR_025355 Daucus carota HOM05D003037 ORTHO05D003659 2.9e-22 108.6 60 81.7
Glyma.19G177100 Glycine max HOM05D003037 ORTHO05D003659 2.9e-22 108.6 61 80.3
Aa31LG2G11000 Aethionema arabicum HOM05D003037 ORTHO05D003659 4.9e-22 107.8 60 83.3
Haze_01824 Corylus avellana HOM05D003037 ORTHO05D003659 8.4e-22 107.1 74 78.4
Lalb_Chr25g0278781 Lupinus albus HOM05D003037 ORTHO05D003659 8.4e-22 107.1 66 74.2
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 8.4e-22 107.1 65 75.4
HPP92_003892 Vanilla planifolia HOM05D003037 ORTHO05D003659 8.4e-22 107.1 65 75.4
MBI05_g00183_MAGBIO Magnolia biondii HOM05D003037 ORTHO05D003659 2.4e-21 105.5 89 57.3
RcHm_v2.0_Chr1g0321201 Rosa chinensis HOM05D003037 ORTHO05D003659 1.6e-20 102.8 60 78.3
Aa31LG1G5170 Aethionema arabicum HOM05D003037 ORTHO05D003659 6.0e-20 100.9 59 81.4
Zm00001eb316500 Zea mays HOM05D003037 ORTHO05D003659 6.0e-20 100.9 81 59.3
AL2G18010 Arabidopsis lyrata HOM05D003037 ORTHO05D003659 7.8e-20 100.5 87 63.2
RcHm_v2.0_Chr1g0321241 Rosa chinensis HOM05D003037 ORTHO05D003659 3.0e-19 98.6 64 68.8
RcHm_v2.0_Chr1g0321261 Rosa chinensis HOM05D003037 ORTHO05D003659 6.6e-19 97.4 64 67.2
Os03g0134300 Oryza sativa ssp. japonica HOM05D003037 ORTHO05D003659 1.5e-18 96.3 60 71.7
MBI04_g26974_MAGBIO Magnolia biondii HOM05D003037 ORTHO05D003659 2.5e-18 95.5 60 68.3
Pp3c18_12130 Physcomitrium patens HOM05D003037 ORTHO05D003659 2.5e-18 95.5 71 60.6
AagrBONN_evm.TU.Sc2ySwM_368.301 Anthoceros agrestis HOM05D003037 ORTHO05D003659 3.3e-18 95.1 89 56.2
Actinidia39012 Actinidia chinensis HOM05D003037 ORTHO05D003659 4.8e-17 91.3 55 78.2
Cre09.g410650 Chlamydomonas reinhardtii HOM05D003037 ORTHO05D003659 1.8e-16 89.4 63 66.7
SMO146G0343 Selaginella moellendorffii HOM05D003037 ORTHO05D003659 1.8e-16 89.4 59 71.2
CBR_g16944 Chara braunii HOM05D003037 ORTHO05D003659 5.3e-16 87.8 60 61.7
MCO01G429 Micromonas commoda HOM05D003037 ORTHO05D003659 6.9e-16 87.4 62 59.7
unitig_747.g21264 Utricularia gibba HOM05D003037 ORTHO05D003659 9.0e-16 87.0 106 46.2
Mapoly0157s0018 Marchantia polymorpha HOM05D003037 ORTHO05D003659 2.0e-15 85.9 95 47.4
Pp3c22_160 Physcomitrium patens HOM05D003037 ORTHO05D003659 2.0e-15 85.9 61 62.3
RcHm_v2.0_Chr1g0321191 Rosa chinensis HOM05D003037 ORTHO05D003659 1.1e-13 80.1 47 78.7
A08p05540 Brassica napus HOM05D000110 ORTHO05D000024 3.5e-12 75.1 68 58.8
Peaxi162Scf00011g00092 Petunia axillaris HOM05D003037 ORTHO05D003659 1.3e-11 73.2 40 80.0
BcaC05g24849 Brassica carinata HOM05D003037 ORTHO05D003659 1.7e-11 72.8 36 91.7
Peaxi162Scf00002g02511 Petunia axillaris HOM05D003037 ORTHO05D003659 3.0e-11 72.0 37 86.5
SGA_v2.0_scaffold272G46366 Striga asiatica HOM05D003037 ORTHO05D003659 3.0e-11 72.0 38 86.8
RcHm_v2.0_Chr6g0256761 Rosa chinensis HOM05D003037 ORTHO05D003659 8.7e-11 70.5 86 47.7
SEGI_23480 Sequoiadendron giganteum HOM05D003037 ORTHO05D003659 8.7e-11 70.5 95 38.9
AUR62041122 Chenopodium quinoa HOM05D003037 ORTHO05D003659 1.5e-10 69.7 89 49.4
RcHm_v2.0_Chr6g0258041 Rosa chinensis HOM05D003037 ORTHO05D003659 5.6e-10 67.8 86 46.5
C04p18160 Brassica napus HOM05D000139 ORTHO05D000103 7.3e-10 67.4 93 45.2
Eucgr.G00352 Eucalyptus grandis HOM05D003037 ORTHO05D003659 9.0e-08 60.5 136 34.6
PRCOL_00006544 Prasinoderma coloniale HOM05D003037 ORTHO05D003659 9.0e-08 60.5 46 56.5


User provided reference genes

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