Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p022494 Quercus lobata HOM05D007107 ORTHO05D009198 3.2e-53 211.5 105 100.0
Cfa004630 Carpinus fangiana HOM05D007107 ORTHO05D009198 1.3e-17 93.2 101 55.4
CiPaw.05G017500 Carya illinoinensis HOM05D007107 ORTHO05D009198 2.2e-17 92.4 107 57.9
Manes.07G058800 Manihot esculenta HOM05D007107 ORTHO05D009198 6.3e-17 90.9 104 54.8
Glyma.10G257200 Glycine max HOM05D007107 ORTHO05D009198 3.1e-16 88.6 69 66.7
Glyma.20G134000 Glycine max HOM05D007107 ORTHO05D009198 4.1e-16 88.2 69 66.7
Haze_10225 Corylus avellana HOM05D007107 ORTHO05D009198 9.1e-16 87.0 105 57.1
Duzib132G0703 Durio zibethinus HOM05D007107 ORTHO05D009198 9.1e-16 87.0 114 50.0
Oeu010443.1 Olea europaea HOM05D007107 ORTHO05D009198 1.2e-15 86.7 65 66.2
Duzib248G0083 Durio zibethinus HOM05D007107 ORTHO05D009198 4.5e-15 84.7 114 48.2
Duzib248G0453 Durio zibethinus HOM05D000446 ORTHO05D000321 1.0e-14 83.6 114 48.2
Peaxi162Scf00016g02820 Petunia axillaris HOM05D007107 ORTHO05D009198 1.3e-14 83.2 72 61.1
Thecc.02G116600 Theobroma cacao HOM05D007107 ORTHO05D009198 1.3e-14 83.2 109 50.5
CSS0046981 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 1.7e-14 82.8 88 51.1
Prupe.8G144000 Prunus persica HOM05D007107 ORTHO05D009198 1.7e-14 82.8 108 47.2
Lj5g0011883 Lotus japonicus HOM05D007107 ORTHO05D009198 2.2e-14 82.4 108 51.9
Oeu009671.1 Olea europaea HOM05D007107 ORTHO05D009198 2.9e-14 82.0 98 57.1
TAR628G1630 Trochodendron aralioides HOM05D007107 ORTHO05D009198 2.9e-14 82.0 103 48.5
Ciclev10029615m.g Citrus clementina HOM05D007107 ORTHO05D009198 3.8e-14 81.6 106 48.1
COL.COLO4_32518 Corchorus olitorius HOM05D007107 ORTHO05D009198 5.0e-14 81.3 111 46.8
Gohir.D12G020100 Gossypium hirsutum HOM05D007107 ORTHO05D009198 5.0e-14 81.3 93 57.0
Potri.001G294800 Populus trichocarpa HOM05D007107 ORTHO05D009198 8.5e-14 80.5 111 47.7
Gorai.008G020500 Gossypium raimondii HOM05D007107 ORTHO05D009198 1.5e-13 79.7 99 53.5
Gohir.A12G019900 Gossypium hirsutum HOM05D007107 ORTHO05D009198 1.9e-13 79.3 99 53.5
Nitab4.5_0008075g0020 Nicotiana tabacum HOM05D007107 ORTHO05D009198 2.5e-13 79.0 72 55.6
Gohir.D13G042600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 3.2e-13 78.6 111 51.4
Gorai.013G050500 Gossypium raimondii HOM05D007107 ORTHO05D009198 3.2e-13 78.6 111 51.4
Lalb_Chr06g0165131 Lupinus albus HOM05D007107 ORTHO05D009198 3.2e-13 78.6 67 59.7
Sopen01g049360 Solanum pennellii HOM05D007107 ORTHO05D009198 3.2e-13 78.6 73 56.2
Phvul.007G045200 Phaseolus vulgaris HOM05D007107 ORTHO05D009198 4.2e-13 78.2 103 48.5
Gohir.A13G046600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 5.5e-13 77.8 104 51.0
Lsat_1_v5_gn_9_111721 Lactuca sativa HOM05D007107 ORTHO05D009198 5.5e-13 77.8 90 50.0
Solyc01g107100.3 Solanum lycopersicum HOM05D007107 ORTHO05D009198 9.5e-13 77.0 73 56.2
Sopen01g049370 Solanum pennellii HOM05D007107 ORTHO05D009198 9.5e-13 77.0 73 56.2
Nitab4.5_0001105g0070 Nicotiana tabacum HOM05D007107 ORTHO05D009198 1.2e-12 76.6 88 52.3
Solyc01g107090.2 Solanum lycopersicum HOM05D007107 ORTHO05D009198 1.2e-12 76.6 106 47.2
TPR.G27135 Trifolium pratense HOM05D007107 ORTHO05D009198 1.2e-12 76.6 70 58.6
Medtr1g106215 Medicago truncatula HOM05D007107 ORTHO05D009198 1.6e-12 76.3 112 44.6
Sed0023372 Sechium edule HOM05D007107 ORTHO05D009198 2.1e-12 75.9 103 47.6
Sed0004586 Sechium edule HOM05D007107 ORTHO05D009198 2.7e-12 75.5 100 48.0
PGR042G2158 Punica granatum HOM05D007107 ORTHO05D009198 3.6e-12 75.1 89 48.3
Ca_11033_v3 Cicer arietinum L. HOM05D007107 ORTHO05D009198 4.7e-12 74.7 70 58.6
Atru.chr5.2359 Acer truncatum HOM05D007107 ORTHO05D009198 6.1e-12 74.3 87 51.7
Psat6g214960 Pisum sativum HOM05D007107 ORTHO05D009198 1.0e-11 73.6 103 48.5
Ah.09g231830 Amaranthus hybridus HOM05D007107 ORTHO05D009198 4.0e-11 71.6 57 63.2
ECA234G2040 Erigeron canadensis HOM05D007107 ORTHO05D009198 5.2e-11 71.2 84 53.6
Migut.B00446 Erythranthe guttata HOM05D007107 ORTHO05D009198 5.2e-11 71.2 57 63.2
Hma1.2p1_1773F.1_g301790 Hydrangea macrophylla HOM05D007107 ORTHO05D009198 5.2e-11 71.2 105 43.8
MD10G1105100 Malus domestica HOM05D007107 ORTHO05D009198 5.2e-11 71.2 98 52.0
Cc02_g19820 Coffea canephora HOM05D007107 ORTHO05D009198 1.2e-10 70.1 70 55.7
TAR376G0510 Trochodendron aralioides HOM05D007107 ORTHO05D009198 2.6e-10 68.9 96 52.1
Rhsim11G0151000 Rhododendron simsii HOM05D007107 ORTHO05D009198 4.4e-10 68.2 92 47.8
MELO3C018001.2 Cucumis melo HOM05D007107 ORTHO05D009198 5.7e-10 67.8 106 45.3
Cpa.g.sc106.53 Carica papaya HOM05D007107 ORTHO05D009198 9.8e-10 67.0 115 40.9
FAN15G2005 Fragaria x ananassa HOM05D007107 ORTHO05D025431 9.8e-10 67.0 110 44.5
CsaV3_4G000330 Cucumis sativus L. HOM05D007107 ORTHO05D009198 1.3e-09 66.6 105 43.8
FAN20G1224 Fragaria x ananassa HOM05D007107 ORTHO05D009198 1.3e-09 66.6 108 43.5
Aqoxy5G00877 Aquilegia oxysepala HOM05D007107 ORTHO05D009198 4.9e-09 64.7 105 46.7
DCAR_001690 Daucus carota HOM05D007107 ORTHO05D009198 6.3e-09 64.3 95 43.2
CiPaw.06G165600 Carya illinoinensis HOM05D007107 ORTHO05D009198 1.4e-08 63.2 93 45.2
RcHm_v2.0_Chr6g0253681 Rosa chinensis HOM05D007107 ORTHO05D009198 1.4e-08 63.2 94 44.7
CSS0000313 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 1.8e-08 62.8 95 44.2
MBI16_g29126_MAGBIO Magnolia biondii HOM05D007107 ORTHO05D009198 3.1e-08 62.0 101 41.6
Rhsim11G0153200 Rhododendron simsii HOM05D007107 ORTHO05D009198 3.1e-08 62.0 71 50.7
PGSC0003DMG400042480 Solanum tuberosum HOM05D007107 ORTHO05D009198 4.1e-08 61.6 72 50.0
Lsat_1_v5_gn_5_114201 Lactuca sativa HOM05D007107 ORTHO05D009198 5.4e-08 61.2 91 46.2
Oeu011135.1 Olea europaea HOM05D007107 ORTHO05D009198 5.4e-08 61.2 60 58.3
ClCG10G010430 Citrullus lanatus HOM05D007107 ORTHO05D009198 9.2e-08 60.5 82 48.8
RcHm_v2.0_Chr6g0253721 Rosa chinensis HOM05D007107 ORTHO05D009198 9.2e-08 60.5 95 43.2
PGSC0003DMG400025747 Solanum tuberosum HOM05D007107 ORTHO05D009198 9.2e-08 60.5 62 53.2
Nn5g30571 Nelumbo nucifera HOM05D007107 ORTHO05D009198 1.2e-07 60.1 117 41.0
Eucgr.G01220 Eucalyptus grandis HOM05D007107 ORTHO05D009198 1.6e-07 59.7 94 42.6
FvH4_2g04290 Fragaria vesca HOM05D007107 ORTHO05D009198 1.6e-07 59.7 110 41.8
FAN24G0068 Fragaria x ananassa HOM05D007107 ORTHO05D009198 1.6e-07 59.7 110 41.8
PGSC0003DMG400025844 Solanum tuberosum HOM05D007107 ORTHO05D009198 2.0e-07 59.3 62 51.6
CARHR095070 Cardamine hirsuta HOM05D007107 ORTHO05D009198 2.7e-07 58.9 97 40.2
Thhalv10021824m.g Eutrema salsugineum HOM05D007107 ORTHO05D009198 2.7e-07 58.9 96 45.8
Ah.14g085610 Amaranthus hybridus HOM05D007107 ORTHO05D009198 5.9e-07 57.8 103 40.8
EL10Ac8g19388 Beta vulgaris HOM05D007107 ORTHO05D009198 7.7e-07 57.4 101 40.6
BcaC09g48926 Brassica carinata HOM05D007107 ORTHO05D009198 1.0e-06 57.0 88 45.5
C01p44500 Brassica napus HOM05D007107 ORTHO05D009198 1.0e-06 57.0 88 45.5
BolC1t04415H Brassica oleracea HOM05D007107 ORTHO05D009198 1.0e-06 57.0 88 45.5
Sc08g0004510 Simmondsia chinensis HOM05D007107 ORTHO05D009198 1.0e-06 57.0 70 48.6
CANSAT25G2317 Cannabis sativa HOM05D007107 ORTHO05D009198 1.3e-06 56.6 75 50.7
AL3G33050 Arabidopsis lyrata HOM05D007107 ORTHO05D009198 1.7e-06 56.2 75 46.7
A03p41330 Brassica napus HOM05D007107 ORTHO05D009198 2.3e-06 55.8 65 53.8
BolC3t17339H Brassica oleracea HOM05D007107 ORTHO05D009198 2.3e-06 55.8 65 50.8
BraA03t13287Z Brassica rapa HOM05D007107 ORTHO05D009198 2.3e-06 55.8 65 53.8
BcaC01g03614 Brassica carinata HOM05D007107 ORTHO05D009198 5.0e-06 54.7 65 52.3
C03p50490 Brassica napus HOM05D007107 ORTHO05D009198 5.0e-06 54.7 65 52.3
BcaB04g20690 Brassica carinata HOM05D007107 ORTHO05D009198 8.6e-06 53.9 86 40.7


User provided reference genes

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