Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p022255 Quercus lobata HOM05D003590 ORTHO05D004290 2.4e-38 161.8 87 100.0
Cfa015230 Carpinus fangiana HOM05D003590 ORTHO05D004290 5.2e-25 117.5 70 92.9
Haze_01407 Corylus avellana HOM05D003590 ORTHO05D004290 5.2e-25 117.5 70 92.9
QL10p052769 Quercus lobata HOM05D003590 ORTHO05D004290 5.2e-25 117.5 70 92.9
Nn7g37627 Nelumbo nucifera HOM05D003590 ORTHO05D004290 1.5e-24 115.9 70 90.0
CDE08G0825 Ceratophyllum demersum HOM05D003590 ORTHO05D004290 2.6e-24 115.2 70 91.4
RcHm_v2.0_Chr6g0285711 Rosa chinensis HOM05D003590 ORTHO05D004290 3.4e-24 114.8 70 90.0
COL.COLO4_10136 Corchorus olitorius HOM05D003590 ORTHO05D004290 4.4e-24 114.4 70 90.0
Glyma.11G124800 Glycine max HOM05D003590 ORTHO05D004290 4.4e-24 114.4 70 88.6
Glyma.12G049400 Glycine max HOM05D003590 ORTHO05D004290 4.4e-24 114.4 70 88.6
VMungo1383G1305 Vigna mungo HOM05D003590 ORTHO05D004290 4.4e-24 114.4 70 88.6
CiPaw.01G172800 Carya illinoinensis HOM05D003590 ORTHO05D004290 5.8e-24 114.0 70 90.0
Gohir.A02G091600 Gossypium hirsutum HOM05D003590 ORTHO05D004290 5.8e-24 114.0 70 88.6
Gohir.D02G109000 Gossypium hirsutum HOM05D003590 ORTHO05D004290 5.8e-24 114.0 70 88.6
Gorai.005G124600 Gossypium raimondii HOM05D003590 ORTHO05D004290 5.8e-24 114.0 70 88.6
Manes.11G128000 Manihot esculenta HOM05D003590 ORTHO05D004290 5.8e-24 114.0 70 88.6
Atru.chr4.1363 Acer truncatum HOM05D003590 ORTHO05D004290 7.5e-24 113.6 70 88.6
CiPaw.02G102900 Carya illinoinensis HOM05D003590 ORTHO05D004290 7.5e-24 113.6 70 90.0
Dinv15385 Davidia involucrata HOM05D003590 ORTHO05D004290 7.5e-24 113.6 70 88.6
Migut.F01864 Erythranthe guttata HOM05D003590 ORTHO05D004290 7.5e-24 113.6 70 90.0
Os01g0895100 Oryza sativa ssp. japonica HOM05D003590 ORTHO05D004290 7.5e-24 113.6 70 87.1
GSVIVG01019065001 Vitis vinifera HOM05D003590 ORTHO05D004290 7.5e-24 113.6 70 88.6
Zm00001eb144840 Zea mays HOM05D003590 ORTHO05D004290 7.5e-24 113.6 70 88.6
Zm00001eb365760 Zea mays HOM05D003590 ORTHO05D004290 7.5e-24 113.6 70 88.6
arahy.Tifrunner.gnm1.ann1.SY3MF3 Arachis hypogaea HOM05D003590 ORTHO05D004290 9.9e-24 113.2 70 87.1
arahy.Tifrunner.gnm1.ann1.YL8857 Arachis hypogaea HOM05D003590 ORTHO05D004290 9.9e-24 113.2 70 87.1
Ca_20810_v3 Cicer arietinum L. HOM05D003590 ORTHO05D004290 9.9e-24 113.2 70 87.1
Duzib151G0409 Durio zibethinus HOM05D003590 ORTHO05D004290 9.9e-24 113.2 70 88.6
Phvul.008G099200 Phaseolus vulgaris HOM05D003590 ORTHO05D004290 9.9e-24 113.2 70 87.1
TPR.G34214 Trifolium pratense HOM05D003590 ORTHO05D004290 9.9e-24 113.2 70 90.0
Lalb_Chr07g0192831 Lupinus albus HOM05D003590 ORTHO05D004290 1.3e-23 112.8 70 87.1
Oeu010166.1 Olea europaea HOM05D003590 ORTHO05D004290 1.3e-23 112.8 70 90.0
PSO339G4307 Papaver somniferum HOM05D003590 ORTHO05D004290 1.3e-23 112.8 70 87.1
PSO384G2196 Papaver somniferum HOM05D003590 ORTHO05D004290 1.3e-23 112.8 70 87.1
Psat7g208480 Pisum sativum HOM05D003590 ORTHO05D004290 1.3e-23 112.8 70 87.1
Sc06g0005010 Simmondsia chinensis HOM05D003590 ORTHO05D004290 1.3e-23 112.8 70 88.6
Eucgr.K00001 Eucalyptus grandis HOM05D003590 ORTHO05D004290 2.2e-23 112.1 70 88.6
FvH4_2g19990 Fragaria vesca HOM05D003590 ORTHO05D004290 2.2e-23 112.1 70 87.1
FAN24G1875 Fragaria x ananassa HOM05D003590 ORTHO05D004290 2.2e-23 112.1 70 87.1
Lj3g0023284 Lotus japonicus HOM05D003590 ORTHO05D004290 2.2e-23 112.1 70 85.7
Prupe.1G203200 Prunus persica HOM05D003590 ORTHO05D004290 2.2e-23 112.1 70 87.1
MSTRG.8205 Avicennia marina HOM05D003590 ORTHO05D004290 2.9e-23 111.7 70 88.6
Cc09_g03870 Coffea canephora HOM05D003590 ORTHO05D004290 2.9e-23 111.7 70 88.6
Duzib268G1650 Durio zibethinus HOM05D003590 ORTHO05D004290 2.9e-23 111.7 70 87.1
FAN15G3511 Fragaria x ananassa HOM05D003590 ORTHO05D004290 2.9e-23 111.7 72 84.7
FAN26G3423 Fragaria x ananassa HOM05D003590 ORTHO05D004290 2.9e-23 111.7 64 93.8
Gohir.A10G141800 Gossypium hirsutum HOM05D003590 ORTHO05D004290 2.9e-23 111.7 70 87.1
Gohir.D10G124700 Gossypium hirsutum HOM05D003590 ORTHO05D004290 2.9e-23 111.7 70 87.1
Gorai.011G137800 Gossypium raimondii HOM05D003590 ORTHO05D004290 2.9e-23 111.7 70 87.1
Lalb_Chr19g0138461 Lupinus albus HOM05D003590 ORTHO05D004290 2.9e-23 111.7 70 87.1
MBI07_g22611_MAGBIO Magnolia biondii HOM05D003590 ORTHO05D004290 2.9e-23 111.7 70 87.1
ATR0743G202 Amborella trichopoda HOM05D003590 ORTHO05D004290 3.7e-23 111.3 70 85.7
Eucgr.A00018 Eucalyptus grandis HOM05D003590 ORTHO05D004290 3.7e-23 111.3 70 85.7
FAN27G0950 Fragaria x ananassa HOM05D003590 ORTHO05D004290 3.7e-23 111.3 70 85.7
Hma1.2p1_0831F.1_g225440 Hydrangea macrophylla HOM05D003590 ORTHO05D004290 3.7e-23 111.3 64 93.8
Manes.04G049785 Manihot esculenta HOM05D003590 ORTHO05D004290 3.7e-23 111.3 70 85.7
Sabra06G0097800 Salix brachista HOM05D003590 ORTHO05D004290 3.7e-23 111.3 66 90.9
TAR362G0082 Trochodendron aralioides HOM05D003590 ORTHO05D004290 3.7e-23 111.3 70 88.6
Dinv29086 Davidia involucrata HOM05D003590 ORTHO05D004290 4.9e-23 110.9 70 87.1
Eucgr.B01427 Eucalyptus grandis HOM05D003590 ORTHO05D004290 4.9e-23 110.9 70 87.1
Lsat_1_v5_gn_9_37260 Lactuca sativa HOM05D003590 ORTHO05D004290 4.9e-23 110.9 70 85.7
Medtr4g068210 Medicago truncatula HOM05D003590 ORTHO05D004290 4.9e-23 110.9 70 85.7
THA.LOC104805702 Tarenaya hassleriana HOM05D003590 ORTHO05D004290 4.9e-23 110.9 70 87.1
GSVIVG01038103001 Vitis vinifera HOM05D003590 ORTHO05D004290 4.9e-23 110.9 70 85.7
AUR62006641 Chenopodium quinoa HOM05D003590 ORTHO05D004290 6.4e-23 110.5 70 87.1
MELO3C017774.2 Cucumis melo HOM05D003590 ORTHO05D004290 6.4e-23 110.5 70 84.3
CsaV3_4G002670 Cucumis sativus L. HOM05D003590 ORTHO05D004290 6.4e-23 110.5 70 84.3
HanXRQChr05g0149811 Helianthus annuus HOM05D003590 ORTHO05D004290 6.4e-23 110.5 70 84.3
Nitab4.5_0004390g0060 Nicotiana tabacum HOM05D003590 ORTHO05D004290 6.4e-23 110.5 70 87.1
Nitab4.5_0009796g0040 Nicotiana tabacum HOM05D003590 ORTHO05D004290 6.4e-23 110.5 70 87.1
Peaxi162Scf00074g01833 Petunia axillaris HOM05D003590 ORTHO05D004290 6.4e-23 110.5 70 87.1
RcHm_v2.0_Chr2g0122441 Rosa chinensis HOM05D003590 ORTHO05D004290 6.4e-23 110.5 70 85.7
Thecc.04G169500 Theobroma cacao HOM05D003590 ORTHO05D004290 6.4e-23 110.5 70 85.7
MD17G1177400 Malus domestica HOM05D003590 ORTHO05D004290 8.3e-23 110.2 70 85.7
TWI36G1101 Tripterygium wilfordii HOM05D003590 ORTHO05D004290 8.3e-23 110.2 70 85.7
CAN.G1177.3 Capsicum annuum HOM05D003590 ORTHO05D004290 1.1e-22 109.8 70 87.1
Ciclev10021047m.g Citrus clementina HOM05D003590 ORTHO05D004290 1.1e-22 109.8 70 87.1
HanXRQChr16g0500391 Helianthus annuus HOM05D003590 ORTHO05D004290 1.1e-22 109.8 70 84.3
Lsat_1_v5_gn_8_26121 Lactuca sativa HOM05D003590 ORTHO05D004290 1.1e-22 109.8 70 84.3
Lj1A579G41 Lonicera japonica HOM05D003590 ORTHO05D004290 1.1e-22 109.8 70 87.1
MBI17_g21475_MAGBIO Magnolia biondii HOM05D003590 ORTHO05D004290 1.1e-22 109.8 70 84.3
PGSC0003DMG400016231 Solanum tuberosum HOM05D003590 ORTHO05D004290 1.1e-22 109.8 70 87.1
HPP92_009006 Vanilla planifolia HOM05D003590 ORTHO05D004290 1.1e-22 109.8 70 84.3
Ah.06g195400 Amaranthus hybridus HOM05D003590 ORTHO05D004290 1.4e-22 109.4 70 84.3
ECA246G2345 Erigeron canadensis HOM05D003590 ORTHO05D004290 1.4e-22 109.4 70 84.3
Rhsim05G0167200 Rhododendron simsii HOM05D003590 ORTHO05D004290 1.4e-22 109.4 77 79.2
AL2G20260 Arabidopsis lyrata HOM05D003590 ORTHO05D004290 1.9e-22 109.0 70 84.3
ClCG07G015120 Citrullus lanatus HOM05D003590 ORTHO05D004290 1.9e-22 109.0 70 82.9
Lj4g0013306 Lotus japonicus HOM05D003590 ORTHO05D004290 1.9e-22 109.0 70 82.9
Oeu064494.2 Olea europaea HOM05D003590 ORTHO05D004290 1.9e-22 109.0 70 85.7
Sed0008844 Sechium edule HOM05D003590 ORTHO05D004290 1.9e-22 109.0 70 82.9
Hund07359 Selenicereus undatus HOM05D003590 ORTHO05D004290 1.9e-22 109.0 70 84.3
MD00G1019200 Malus domestica HOM05D003590 ORTHO05D004290 2.4e-22 108.6 70 84.3
Potri.016G099400 Populus trichocarpa HOM05D003590 ORTHO05D004290 2.4e-22 108.6 66 89.4
Sed0014148 Sechium edule HOM05D003590 ORTHO05D004290 2.4e-22 108.6 70 82.9
Solyc11g008990.2 Solanum lycopersicum HOM05D003590 ORTHO05D004290 2.4e-22 108.6 70 85.7
Sopen11g004770 Solanum pennellii HOM05D003590 ORTHO05D004290 2.4e-22 108.6 70 85.7
CSS0008581 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 3.2e-22 108.2 70 84.3
CSS0039108 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 3.2e-22 108.2 70 84.3
CANSAT54G1837 Cannabis sativa HOM05D003590 ORTHO05D004290 3.2e-22 108.2 70 85.7
DCAR_023942 Daucus carota HOM05D003590 ORTHO05D004290 3.2e-22 108.2 70 85.7
AT1G65260 Arabidopsis thaliana HOM05D003590 ORTHO05D004290 4.1e-22 107.8 70 82.9
Carub.0006s2551 Capsella rubella HOM05D003590 ORTHO05D004290 4.1e-22 107.8 70 82.9
CARHR056900 Cardamine hirsuta HOM05D003590 ORTHO05D004290 4.1e-22 107.8 70 82.9
Lj3A152T20 Lonicera japonica HOM05D003590 ORTHO05D004290 4.1e-22 107.8 70 82.9
Potri.006G123600 Populus trichocarpa HOM05D003590 ORTHO05D004290 4.1e-22 107.8 66 87.9
Dinv33190 Davidia involucrata HOM05D003590 ORTHO05D004290 5.4e-22 107.5 70 84.3
Duzib212G0521 Durio zibethinus HOM05D003590 ORTHO05D004290 5.4e-22 107.5 70 84.3
PGR119G1440 Punica granatum HOM05D003590 ORTHO05D004290 5.4e-22 107.5 70 84.3
EL10Ac4g10000 Beta vulgaris HOM05D003590 ORTHO05D004290 7.1e-22 107.1 70 84.3
vmacro19566 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 7.1e-22 107.1 63 90.5
BcaB05g24099 Brassica carinata HOM05D003590 ORTHO05D004290 9.2e-22 106.7 70 81.4
BcaC03g14688 Brassica carinata HOM05D003590 ORTHO05D004290 9.2e-22 106.7 70 81.4
A02p13120 Brassica napus HOM05D003590 ORTHO05D004290 9.2e-22 106.7 70 81.4
C02p21260 Brassica napus HOM05D003590 ORTHO05D004290 9.2e-22 106.7 70 81.4
BolC2t08266H Brassica oleracea HOM05D003590 ORTHO05D004290 9.2e-22 106.7 70 81.4
BraA02t06368Z Brassica rapa HOM05D003590 ORTHO05D004290 9.2e-22 106.7 70 81.4
PGR042G3827 Punica granatum HOM05D003590 ORTHO05D004290 9.2e-22 106.7 70 81.4
Rhsim09G0012200 Rhododendron simsii HOM05D003590 ORTHO05D004290 9.2e-22 106.7 70 82.9
SalBow6G6444 Salvia bowleyana HOM05D003590 ORTHO05D004290 9.2e-22 106.7 70 82.9
DCAR_002151 Daucus carota HOM05D003590 ORTHO05D004290 1.2e-21 106.3 70 82.9
Thhalv10018833m.g Eutrema salsugineum HOM05D003590 ORTHO05D004290 1.2e-21 106.3 70 81.4
Sp5g19930 Schrenkiella parvula HOM05D003590 ORTHO05D004290 1.2e-21 106.3 70 81.4
Aqoxy2G04149 Aquilegia oxysepala HOM05D003590 ORTHO05D004290 3.5e-21 104.8 70 78.6
Actinidia27105 Actinidia chinensis HOM05D003590 ORTHO05D004290 4.6e-21 104.4 70 82.9
SGA_v2.0_scaffold122G33190 Striga asiatica HOM05D003590 ORTHO05D004290 4.6e-21 104.4 64 89.1
Aa31LG2G2380 Aethionema arabicum HOM05D003590 ORTHO05D004290 6.0e-21 104.0 70 80.0
PSO478G1249 Papaver somniferum HOM05D003590 ORTHO05D004290 7.8e-21 103.6 70 80.0
vmacro00650 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 7.8e-21 103.6 70 81.4
vmacro00679 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 7.8e-21 103.6 70 81.4
SGA_v2.0_scaffold62G21494 Striga asiatica HOM05D004200 ORTHO05D004996 1.0e-20 103.2 70 80.0
CANSAT64G0301 Cannabis sativa HOM05D003590 ORTHO05D004290 1.7e-20 102.4 70 78.6
Glyma.18G243700 Glycine max HOM05D003590 ORTHO05D004290 1.7e-20 102.4 70 78.6
Lj1g0027383 Lotus japonicus HOM05D003590 ORTHO05D004290 1.7e-20 102.4 70 80.0
Pp3c2_28040 Physcomitrium patens HOM05D003590 ORTHO05D004290 3.0e-20 101.7 70 78.6
Actinidia03270 Actinidia chinensis HOM05D003590 ORTHO05D004290 3.9e-20 101.3 70 85.7
Mapoly0058s0048 Marchantia polymorpha HOM05D003590 ORTHO05D004290 3.9e-20 101.3 70 77.1
Sabra16G0098800 Salix brachista HOM05D003590 ORTHO05D004290 3.9e-20 101.3 66 84.8
CSS0013807 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 5.1e-20 100.9 70 80.0
Phvul.008G052900 Phaseolus vulgaris HOM05D003590 ORTHO05D004290 6.6e-20 100.5 70 77.1
PSO782G1591 Papaver somniferum HOM05D003590 ORTHO05D004290 1.1e-19 99.8 70 77.1
FvH4_6g53380 Fragaria vesca HOM05D003590 ORTHO05D004290 1.9e-19 99.0 70 80.0
MD15G1434500 Malus domestica HOM05D003590 ORTHO05D004290 4.3e-19 97.8 75 72.0
AagrBONN_evm.TU.Sc2ySwM_228.379 Anthoceros agrestis HOM05D003590 ORTHO05D004290 2.1e-18 95.5 70 74.3
Pp3c7_13570 Physcomitrium patens HOM05D003590 ORTHO05D004290 3.6e-18 94.7 70 72.9
FAN19G0667 Fragaria x ananassa HOM05D003590 ORTHO05D004290 4.7e-18 94.4 63 82.5
SHI32795 Sapria himalayana HOM05D003590 ORTHO05D004290 4.7e-18 94.4 82 69.5
unitig_52.g17513 Utricularia gibba HOM05D003590 ORTHO05D004290 8.1e-18 93.6 70 71.4
SEGI_22814 Sequoiadendron giganteum HOM05D003590 ORTHO05D004290 1.8e-17 92.4 70 71.4
CBR_g79424 Chara braunii HOM05D003590 ORTHO05D004290 2.4e-17 92.0 70 71.4
SMO115G0200 Selaginella moellendorffii HOM05D003590 ORTHO05D004290 2.4e-17 92.0 70 71.4
PRCOL_00001168 Prasinoderma coloniale HOM05D003590 ORTHO05D004290 3.4e-16 88.2 77 64.9
ECA246G3922 Erigeron canadensis HOM05D003590 ORTHO05D004290 7.6e-16 87.0 63 71.4
Hund21913 Selenicereus undatus HOM05D003590 ORTHO05D004290 2.2e-15 85.5 70 74.3
Nn1g09673 Nelumbo nucifera HOM05D003590 ORTHO05D004290 1.4e-14 82.8 70 71.4
Cpa.g.sc123.34 Carica papaya HOM05D003590 ORTHO05D004290 1.9e-14 82.4 83 63.9
Cre13.g583550 Chlamydomonas reinhardtii HOM05D003590 ORTHO05D004290 1.9e-14 82.4 70 62.9
Lsat_1_v5_gn_1_99340 Lactuca sativa HOM05D003590 ORTHO05D004290 7.1e-14 80.5 57 77.2
Pp3c10_14840 Physcomitrium patens HOM05D003590 ORTHO05D004290 9.2e-14 80.1 70 61.4
FvH4_3g16870 Fragaria vesca HOM05D003590 ORTHO05D004290 2.7e-13 78.6 70 65.7
FAN11G2382 Fragaria x ananassa HOM05D003590 ORTHO05D004290 2.7e-13 78.6 70 65.7
FAN16G0742 Fragaria x ananassa HOM05D003590 ORTHO05D004290 2.7e-13 78.6 70 65.7
MCO10G215 Micromonas commoda HOM05D003590 ORTHO05D004290 5.1e-12 74.3 51 72.5
RcHm_v2.0_Chr5g0028111 Rosa chinensis HOM05D003590 ORTHO05D004290 1.9e-11 72.4 70 64.3
Cre11.g468050 Chlamydomonas reinhardtii HOM05D003590 ORTHO05D004290 3.6e-10 68.2 60 56.7
AagrBONN_evm.TU.Sc2ySwM_228.2375 Anthoceros agrestis HOM05D003590 ORTHO05D004290 4.0e-09 64.7 61 60.7
Cpa.g.sc9.339 Carica papaya HOM05D003590 ORTHO05D004290 6.4e-07 57.4 70 55.7


User provided reference genes

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