Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p021821 Quercus lobata HOM05D005843 ORTHO05D007781 0.0e+00 1085.5 552 100.0
QL06p005681 Quercus lobata HOM05D005843 ORTHO05D007781 4.5e-247 857.8 552 81.2
Haze_20785 Corylus avellana HOM05D005843 ORTHO05D007781 7.4e-234 813.9 566 75.6
CiPaw.09G192200 Carya illinoinensis HOM05D005843 ORTHO05D007781 1.2e-228 796.6 552 73.9
GSVIVG01034179001 Vitis vinifera HOM05D005843 ORTHO05D007781 1.1e-208 730.3 552 66.8
Atru.chr8.1969 Acer truncatum HOM05D005843 ORTHO05D007781 6.6e-206 721.1 552 67.2
FAN14G2296 Fragaria x ananassa HOM05D005843 ORTHO05D007781 5.9e-199 698.0 552 64.5
TAR633G1568 Trochodendron aralioides HOM05D005843 ORTHO05D007781 3.0e-198 695.7 553 65.3
FAN05G5617 Fragaria x ananassa HOM05D005843 ORTHO05D007781 1.1e-197 693.7 552 63.9
RcHm_v2.0_Chr3g0466751 Rosa chinensis HOM05D005843 ORTHO05D007781 1.6e-196 689.9 553 64.7
Manes.17G047400 Manihot esculenta HOM05D005843 ORTHO05D007781 2.8e-196 689.1 552 63.6
Gohir.A09G156300 Gossypium hirsutum HOM05D005843 ORTHO05D007781 2.4e-192 676.0 552 63.2
Duzib128G1977 Durio zibethinus HOM05D005843 ORTHO05D007781 4.1e-192 675.2 570 62.8
Prupe.6G254200 Prunus persica HOM05D005843 ORTHO05D007781 1.2e-191 673.7 552 62.9
Ca_26026_v3 Cicer arietinum L. HOM05D005843 ORTHO05D007781 1.6e-191 673.3 552 61.6
Gorai.006G173000 Gossypium raimondii HOM05D005843 ORTHO05D007781 2.7e-191 672.5 552 63.0
Gohir.D09G151700 Gossypium hirsutum HOM05D005843 ORTHO05D007781 4.6e-191 671.8 552 63.0
Thecc.05G040300 Theobroma cacao HOM05D005843 ORTHO05D007781 6.0e-191 671.4 552 64.1
CANSAT35G1785 Cannabis sativa HOM05D005843 ORTHO05D007781 1.7e-190 669.8 563 61.8
Eucgr.K03141 Eucalyptus grandis HOM05D005843 ORTHO05D007781 3.9e-190 668.7 552 60.9
Medtr7g060680 Medicago truncatula HOM05D005843 ORTHO05D007781 8.6e-190 667.5 553 61.1
MD12G1140900 Malus domestica HOM05D005843 ORTHO05D007781 1.1e-189 667.2 554 62.8
Hma1.2p1_1513F.1_g288040 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 5.6e-189 664.8 552 60.9
TPR.G23290 Trifolium pratense HOM05D005843 ORTHO05D007781 2.1e-188 662.9 556 60.3
TWI38G1602 Tripterygium wilfordii HOM05D005843 ORTHO05D007781 2.8e-188 662.5 552 61.8
CsaV3_4G024980 Cucumis sativus L. HOM05D005843 ORTHO05D007781 1.4e-187 660.2 554 60.1
MD04G1127500 Malus domestica HOM05D005843 ORTHO05D007781 2.0e-186 656.4 554 62.5
MELO3C003129.2 Cucumis melo HOM05D005843 ORTHO05D007781 9.8e-186 654.1 552 59.2
Psat5g101400 Pisum sativum HOM05D005843 ORTHO05D007781 7.1e-184 647.9 552 59.6
FAN02G2362 Fragaria x ananassa HOM05D005843 ORTHO05D007781 9.2e-184 647.5 583 59.0
Cpa.g.sc332.7 Carica papaya HOM05D005843 ORTHO05D007781 1.6e-183 646.7 552 60.7
ClCG04G008190 Citrullus lanatus HOM05D005843 ORTHO05D007781 3.5e-183 645.6 554 59.7
Lj3C968G10 Lonicera japonica HOM05D005843 ORTHO05D007781 4.6e-183 645.2 590 58.0
Lalb_Chr19g0125371 Lupinus albus HOM05D005843 ORTHO05D007781 1.7e-182 643.3 555 60.2
Nn8g39667 Nelumbo nucifera HOM05D005843 ORTHO05D007781 8.6e-182 641.0 552 60.3
Cc06_g02690 Coffea canephora HOM05D005843 ORTHO05D007781 1.2e-180 637.1 552 58.2
PGR004G0455 Punica granatum HOM05D005843 ORTHO05D007781 2.1e-180 636.3 552 60.3
FAN09G3893 Fragaria x ananassa HOM05D005843 ORTHO05D007781 2.8e-180 636.0 562 60.3
Glyma.07G131100 Glycine max HOM05D005843 ORTHO05D007781 2.8e-180 636.0 552 59.8
Oeu024347.1 Olea europaea HOM05D005843 ORTHO05D007781 4.0e-179 632.1 552 57.8
Sc20g0004950 Simmondsia chinensis HOM05D005843 ORTHO05D007781 5.2e-179 631.7 552 58.7
arahy.Tifrunner.gnm1.ann1.JAB43P Arachis hypogaea HOM05D005843 ORTHO05D007781 4.4e-178 628.6 557 59.2
VMungo1383G2898 Vigna mungo HOM05D005843 ORTHO05D007781 7.6e-178 627.9 552 59.1
Phvul.008G100900 Phaseolus vulgaris HOM05D005843 ORTHO05D007781 1.7e-177 626.7 552 59.6
PSO151G0180 Papaver somniferum HOM05D005843 ORTHO05D007781 2.2e-177 626.3 553 58.8
PSO339G2649 Papaver somniferum HOM05D005843 ORTHO05D007781 8.4e-177 624.4 553 58.6
Aqoxy6G01388 Aquilegia oxysepala HOM05D005843 ORTHO05D007781 1.1e-176 624.0 553 59.1
Rhsim05G0192300 Rhododendron simsii HOM05D005843 ORTHO05D007781 3.2e-176 622.5 552 60.0
DCAR_014847 Daucus carota HOM05D005843 ORTHO05D007781 4.6e-175 618.6 554 57.0
Sed0019468 Sechium edule HOM05D005843 ORTHO05D007781 4.6e-175 618.6 524 59.5
Hund24578 Selenicereus undatus HOM05D005843 ORTHO05D007781 4.6e-175 618.6 554 57.9
ECA238G1173 Erigeron canadensis HOM05D005843 ORTHO05D007781 1.2e-170 604.0 553 55.9
Thhalv10013300m.g Eutrema salsugineum HOM05D005843 ORTHO05D007781 1.5e-170 603.6 555 57.1
PGSC0003DMG400008911 Solanum tuberosum HOM05D005843 ORTHO05D007781 1.5e-170 603.6 553 57.9
Nitab4.5_0001190g0070 Nicotiana tabacum HOM05D005843 ORTHO05D007781 2.0e-170 603.2 553 57.3
Sopen09g005490 Solanum pennellii HOM05D005843 ORTHO05D007781 2.9e-169 599.4 553 57.1
EL10Ac3g07255 Beta vulgaris HOM05D005843 ORTHO05D007781 1.4e-168 597.0 555 56.2
Migut.J00332 Erythranthe guttata HOM05D005843 ORTHO05D007781 7.1e-168 594.7 552 56.0
BolC9t60149H Brassica oleracea HOM05D005843 ORTHO05D007781 1.2e-167 594.0 555 55.9
A10p33250 Brassica napus HOM05D005843 ORTHO05D007781 7.8e-167 591.3 556 55.9
CAN.G326.14 Capsicum annuum HOM05D005843 ORTHO05D007781 7.8e-167 591.3 553 56.8
A03p00670 Brassica napus HOM05D005843 ORTHO05D007781 1.3e-166 590.5 559 56.0
BcaNung02129 Brassica carinata HOM05D005843 ORTHO05D007781 1.7e-166 590.1 554 55.8
Hma1.2p1_1513F.1_g288030 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 5.1e-166 588.6 452 64.6
Carub.0006s0120 Capsella rubella HOM05D005843 ORTHO05D007781 1.1e-165 587.4 557 55.8
THA.LOC104809903 Tarenaya hassleriana HOM05D005843 ORTHO05D007781 1.9e-165 586.6 553 57.0
HanXRQChr16g0515781 Helianthus annuus HOM05D005843 ORTHO05D007781 4.3e-165 585.5 536 56.2
Peaxi162Scf00165g01322 Petunia axillaris HOM05D005843 ORTHO05D007781 2.1e-164 583.2 595 53.6
SGA_v2.0_scaffold75G24948 Striga asiatica HOM05D005843 ORTHO05D007781 4.8e-164 582.0 552 55.4
BraA03t09456Z Brassica rapa HOM05D005843 ORTHO05D007781 3.1e-163 579.3 563 55.1
Solyc09g010770.3 Solanum lycopersicum HOM05D005843 ORTHO05D007781 3.1e-163 579.3 556 56.1
BcaC06g31988 Brassica carinata HOM05D005843 ORTHO05D007781 6.9e-163 578.2 557 54.9
Lsat_1_v5_gn_2_17401 Lactuca sativa HOM05D005843 ORTHO05D007781 9.0e-163 577.8 548 53.8
BcaNung05922 Brassica carinata HOM05D005843 ORTHO05D007781 1.2e-162 577.4 555 54.8
CARHR211000 Cardamine hirsuta HOM05D005843 ORTHO05D007781 1.2e-162 577.4 555 54.8
Sp6g40070 Schrenkiella parvula HOM05D005843 ORTHO05D007781 2.0e-162 576.6 555 54.6
C03p00940 Brassica napus HOM05D005843 ORTHO05D007781 5.8e-162 575.1 555 56.0
BolC3t12656H Brassica oleracea HOM05D005843 ORTHO05D007781 5.8e-162 575.1 555 56.0
AT5G02410 Arabidopsis thaliana HOM05D005843 ORTHO05D007781 7.6e-162 574.7 555 54.4
Dinv35609 Davidia involucrata HOM05D005843 ORTHO05D007781 2.2e-161 573.2 468 64.1
SalBow3G1829 Salvia bowleyana HOM05D005843 ORTHO05D007781 2.9e-161 572.8 551 54.1
BcaB01g06160 Brassica carinata HOM05D005843 ORTHO05D007781 1.1e-160 570.9 555 55.7
AL6G11640 Arabidopsis lyrata HOM05D005843 ORTHO05D007781 3.2e-160 569.3 539 54.5
Lj3g0024665 Lotus japonicus HOM05D005843 ORTHO05D007781 1.2e-159 567.4 451 63.2
Glyma.18G179500 Glycine max HOM05D005843 ORTHO05D007781 3.5e-159 565.8 552 56.0
CSS0035027 Camellia sinensis var. sinensis HOM05D005843 ORTHO05D007781 2.3e-158 563.1 501 60.7
Aa31LG1G22390 Aethionema arabicum HOM05D005843 ORTHO05D007781 5.1e-158 562.0 625 49.6
Sabra06G0064400 Salix brachista HOM05D005843 ORTHO05D007781 5.1e-158 562.0 575 55.3
Actinidia26464 Actinidia chinensis HOM05D005843 ORTHO05D000250 4.3e-157 558.9 480 62.3
C09p74160 Brassica napus HOM05D005843 ORTHO05D007781 7.6e-154 548.1 525 55.6
AUR62030297 Chenopodium quinoa HOM05D005843 ORTHO05D007781 4.9e-153 545.4 634 49.2
SHI00339 Sapria himalayana HOM05D005843 ORTHO05D007781 3.9e-150 535.8 552 52.4
HPP92_000805 Vanilla planifolia HOM05D005843 ORTHO05D007781 8.1e-148 528.1 553 50.5
unitig_26.g9195 Utricularia gibba HOM05D005843 ORTHO05D007781 2.3e-134 483.4 451 57.2
AUR62015928 Chenopodium quinoa HOM05D005843 ORTHO05D007781 3.9e-134 482.6 554 48.2
arahy.Tifrunner.gnm1.ann1.HAEF8J Arachis hypogaea HOM05D005843 ORTHO05D007781 8.7e-134 481.5 391 62.7
FvH4_6g13910 Fragaria vesca HOM05D005843 ORTHO05D007781 6.3e-132 475.3 418 60.3
Os04g0503700 Oryza sativa ssp. japonica HOM05D005843 ORTHO05D007781 1.5e-125 454.1 509 46.4
Dinv37176 Davidia involucrata HOM05D005843 ORTHO05D007781 4.3e-125 452.6 340 66.5
Pp3c4_12410 Physcomitrium patens HOM05D005843 ORTHO05D007781 1.4e-120 437.6 570 45.4
Potri.006G084800 Populus trichocarpa HOM05D005843 ORTHO05D007781 1.7e-108 397.5 324 62.3
SMO137G0039 Selaginella moellendorffii HOM05D005843 ORTHO05D007781 3.7e-108 396.4 566 41.3
AUR62018365 Chenopodium quinoa HOM05D005843 ORTHO05D007781 6.5e-97 359.0 362 55.2
Mapoly0047s0019 Marchantia polymorpha HOM05D005843 ORTHO05D007781 2.2e-92 344.0 568 38.2
CDE09G0345 Ceratophyllum demersum HOM05D005843 ORTHO05D007781 7.0e-91 339.0 450 43.3
ATR0585G056 Amborella trichopoda HOM05D005843 ORTHO05D007781 2.3e-89 334.0 431 45.7
Zm00001eb078080 Zea mays HOM05D005843 ORTHO05D007781 1.7e-84 317.8 341 47.5
vmacro20152 Vaccinium macrocarpon HOM05D005843 ORTHO05D007781 2.2e-84 317.4 472 43.4
SGA_v2.0_scaffold75G24944 Striga asiatica HOM05D005843 ORTHO05D007781 1.7e-76 291.2 288 53.1
BcaC06g31987 Brassica carinata HOM05D005843 ORTHO05D007781 4.1e-75 286.6 362 46.1
Nitab4.5_0002018g0090 Nicotiana tabacum HOM05D005843 ORTHO05D007781 4.0e-70 270.0 291 52.6
A03p00710 Brassica napus HOM05D005843 ORTHO05D007781 1.1e-67 261.9 238 59.7
AagrBONN_evm.TU.Sc2ySwM_117.1914 Anthoceros agrestis HOM05D005843 ORTHO05D007781 1.5e-64 251.5 483 35.4
TAR636G2087 Trochodendron aralioides HOM05D005843 ORTHO05D007781 1.6e-63 248.1 184 66.3
BcaNung05921 Brassica carinata HOM05D002515 ORTHO05D002722 2.4e-59 234.2 429 38.0
CBR_g29861 Chara braunii HOM05D005843 ORTHO05D000002 3.3e-56 223.8 354 38.7
Cre01.g041300 Chlamydomonas reinhardtii HOM05D005843 ORTHO05D007781 1.4e-46 191.8 581 28.9
TAR636G1000 Trochodendron aralioides HOM05D005843 ORTHO05D007781 9.9e-45 185.7 126 76.2
TAR636G1324 Trochodendron aralioides HOM05D005843 ORTHO05D007781 9.9e-45 185.7 126 76.2
DCAR_015734 Daucus carota HOM05D005843 ORTHO05D007781 1.2e-42 178.7 136 60.3
VMungo1309G2290 Vigna mungo HOM05D005843 ORTHO05D007781 1.3e-41 175.3 177 55.4
AUR62040681 Chenopodium quinoa HOM05D005843 ORTHO05D007781 6.4e-36 156.4 192 44.3
VMungo1309G1664 Vigna mungo HOM05D005843 ORTHO05D007781 4.6e-26 123.6 222 38.3
SEGI_06123 Sequoiadendron giganteum HOM05D005843 ORTHO05D007781 2.3e-25 121.3 116 52.6
Haze_26583 Corylus avellana HOM05D005843 ORTHO05D007781 9.7e-24 115.9 546 24.7
DCAR_015735 Daucus carota HOM05D005843 ORTHO05D007781 2.0e-21 108.2 60 81.7
TAR636G3605 Trochodendron aralioides HOM05D005843 ORTHO05D007781 5.5e-19 100.1 57 78.9
C03p92170 Brassica napus HOM05D005843 ORTHO05D040940 7.9e-18 96.3 62 71.0
BolC3t21533H Brassica oleracea HOM05D005843 ORTHO05D040940 7.9e-18 96.3 62 71.0
Hma1.2p1_1611F.1_g293520 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 3.9e-17 94.0 53 79.2
SEGI_08652 Sequoiadendron giganteum HOM05D005843 ORTHO05D000001 3.7e-15 87.4 53 66.0
TAR636G0893 Trochodendron aralioides HOM05D005843 ORTHO05D007781 2.4e-14 84.7 65 60.0
BraA10t45356Z Brassica rapa HOM05D005843 ORTHO05D007781 1.3e-12 79.0 64 56.2
SEGI_16582 Sequoiadendron giganteum HOM05D005843 ORTHO05D014789 5.0e-12 77.0 89 47.2


User provided reference genes

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