Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 2.5e-53 211.8 105 100.0
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 5.5e-53 210.7 105 99.0
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.7e-38 162.5 106 75.5
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 8.8e-35 150.2 99 74.7
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 7.0e-32 140.6 101 69.3
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 9.1e-32 140.2 103 67.0
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 9.1e-32 140.2 101 68.3
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 1.6e-31 139.4 101 68.3
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 1.6e-31 139.4 101 67.3
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 3.5e-31 138.3 101 68.3
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 3.5e-31 138.3 101 67.3
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 3.5e-31 138.3 101 68.3
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 7.7e-31 137.1 101 66.3
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 7.7e-31 137.1 101 67.3
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 7.7e-31 137.1 101 67.3
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 1.0e-30 136.7 101 68.3
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 1.0e-30 136.7 103 66.0
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 1.3e-30 136.3 103 64.1
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.3e-30 136.3 103 66.0
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 1.7e-30 136.0 103 65.0
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 2.2e-30 135.6 101 66.3
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 2.9e-30 135.2 103 66.0
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 3.8e-30 134.8 101 67.3
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 3.8e-30 134.8 103 64.1
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 3.8e-30 134.8 103 64.1
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 3.8e-30 134.8 103 65.0
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 3.8e-30 134.8 103 65.0
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 3.8e-30 134.8 103 65.0
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 3.8e-30 134.8 103 66.0
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 5.0e-30 134.4 101 66.3
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 5.0e-30 134.4 103 63.1
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 6.5e-30 134.0 101 66.3
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 6.5e-30 134.0 103 65.0
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 6.5e-30 134.0 103 65.0
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 8.5e-30 133.7 101 66.3
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 8.5e-30 133.7 101 65.3
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 8.5e-30 133.7 101 67.3
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 8.5e-30 133.7 101 67.3
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 8.5e-30 133.7 101 65.3
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 1.1e-29 133.3 101 65.3
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 1.1e-29 133.3 101 65.3
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 1.1e-29 133.3 102 63.7
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 1.5e-29 132.9 103 62.1
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 1.5e-29 132.9 101 64.4
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 1.5e-29 132.9 101 65.3
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.5e-29 132.9 101 67.3
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.5e-29 132.9 101 67.3
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 1.5e-29 132.9 103 64.1
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 1.9e-29 132.5 101 65.3
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 1.9e-29 132.5 103 63.1
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 3.2e-29 131.7 101 66.3
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 3.2e-29 131.7 101 64.4
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 3.2e-29 131.7 101 65.3
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 4.2e-29 131.3 103 63.1
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 4.2e-29 131.3 103 63.1
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.2e-29 131.3 101 66.3
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 5.5e-29 131.0 100 66.0
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 7.2e-29 130.6 103 64.1
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 7.2e-29 130.6 103 64.1
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 7.2e-29 130.6 101 61.4
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 1.2e-28 129.8 101 63.4
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 1.2e-28 129.8 103 62.1
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.2e-28 129.8 102 64.7
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.2e-28 129.8 102 64.7
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 1.2e-28 129.8 103 62.1
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 1.2e-28 129.8 101 65.3
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 1.2e-28 129.8 101 64.4
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 1.6e-28 129.4 103 62.1
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 1.6e-28 129.4 102 64.7
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 1.6e-28 129.4 101 62.4
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 2.7e-28 128.6 102 61.8
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 2.7e-28 128.6 102 61.8
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 2.7e-28 128.6 101 61.4
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 3.6e-28 128.3 101 64.4
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 4.7e-28 127.9 103 63.1
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 4.7e-28 127.9 101 63.4
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 4.7e-28 127.9 101 63.4
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 4.7e-28 127.9 101 63.4
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 4.7e-28 127.9 103 62.1
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 8.0e-28 127.1 103 62.1
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 1.8e-27 125.9 102 60.8
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 1.8e-27 125.9 101 61.4
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 1.8e-27 125.9 101 62.4
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 2.3e-27 125.6 102 61.8
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 3.0e-27 125.2 103 59.2
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 6.7e-27 124.0 101 62.4
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 6.7e-27 124.0 101 62.4
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 6.7e-27 124.0 101 62.4
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 6.7e-27 124.0 101 62.4
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 8.8e-27 123.6 101 62.4
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 8.8e-27 123.6 101 62.4
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 1.5e-26 122.9 101 61.4
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 1.5e-26 122.9 101 61.4
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 1.5e-26 122.9 101 61.4
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 2.0e-26 122.5 101 61.4
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 2.0e-26 122.5 101 61.4
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.0e-26 122.5 99 62.6
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 2.0e-26 122.5 101 62.4
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 2.0e-26 122.5 108 60.2
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 2.6e-26 122.1 101 60.4
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 2.6e-26 122.1 101 60.4
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 2.6e-26 122.1 101 60.4
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 2.6e-26 122.1 103 62.1
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 3.3e-26 121.7 101 60.4
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 3.3e-26 121.7 101 58.4
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 7.5e-26 120.6 101 60.4
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 7.5e-26 120.6 101 60.4
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 7.5e-26 120.6 104 58.7
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 1.3e-25 119.8 103 58.3
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 1.7e-25 119.4 101 59.4
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 2.2e-25 119.0 101 59.4
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 2.2e-25 119.0 103 57.3
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 2.2e-25 119.0 101 58.4
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 2.8e-25 118.6 88 69.3
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 2.8e-25 118.6 108 58.3
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 2.8e-25 118.6 103 58.3
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 3.7e-25 118.2 90 66.7
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 4.8e-25 117.9 103 56.3
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 1.4e-24 116.3 89 65.2
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 5.9e-23 110.9 102 55.9
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 7.7e-23 110.5 104 57.7
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 1.0e-22 110.2 103 56.3
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 3.8e-22 108.2 103 57.3
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 3.8e-22 108.2 71 76.1
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 4.2e-21 104.8 78 67.9
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 4.2e-21 104.8 104 51.0
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 1.2e-20 103.2 66 75.8
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 2.1e-20 102.4 68 75.0
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 3.6e-20 101.7 103 52.4
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 6.1e-20 100.9 66 75.8
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 1.8e-19 99.4 101 50.5
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 1.8e-19 99.4 95 54.7
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 4.0e-19 98.2 104 47.1
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 5.2e-19 97.8 95 52.6
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 1.2e-18 96.7 90 56.7
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 2.0e-18 95.9 91 52.7
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 2.0e-18 95.9 90 52.2
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 5.7e-18 94.4 90 52.2
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 9.8e-18 93.6 66 71.2
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 8.3e-17 90.5 73 60.3
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 5.4e-16 87.8 101 46.5
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 9.1e-16 87.0 94 51.1
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.8e-14 81.6 63 71.4
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 5.5e-13 77.8 98 41.8
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 7.2e-13 77.4 86 50.0
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 1.4e-11 73.2 54 64.8
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.8e-11 72.8 83 48.2
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 1.7e-09 66.2 81 46.9
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 2.8e-09 65.5 101 36.6
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 4.9e-09 64.7 88 40.9
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 3.5e-07 58.5 57 52.6
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.0e-06 57.0 64 48.4


User provided reference genes

Program Settings