Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 2.4e-96 355.5 180 100.0
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 1.7e-94 349.4 180 98.9
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 1.2e-92 343.2 178 96.1
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 2.1e-92 342.4 177 96.6
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 2.7e-92 342.0 178 96.1
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 2.7e-92 342.0 178 96.1
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 3.5e-92 341.7 178 95.5
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 4.6e-92 341.3 178 95.5
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 4.6e-92 341.3 178 94.9
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 4.6e-92 341.3 178 94.9
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 4.6e-92 341.3 178 95.5
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 6.0e-92 340.9 178 94.9
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 6.0e-92 340.9 180 94.4
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 7.9e-92 340.5 178 94.9
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 1.3e-91 339.7 178 94.9
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 1.3e-91 339.7 178 95.5
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.3e-91 339.7 178 94.9
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 1.8e-91 339.3 177 96.0
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 1.8e-91 339.3 177 96.0
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 1.8e-91 339.3 178 94.9
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.8e-91 339.3 178 94.9
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 1.8e-91 339.3 178 94.9
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 2.3e-91 339.0 180 93.9
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 3.9e-91 338.2 178 93.8
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 5.1e-91 337.8 178 94.4
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 6.7e-91 337.4 178 94.4
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 6.7e-91 337.4 178 93.8
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 1.1e-90 336.7 178 94.4
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 1.9e-90 335.9 178 93.3
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 1.9e-90 335.9 178 92.7
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 3.3e-90 335.1 178 92.7
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 3.3e-90 335.1 178 92.7
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 4.3e-90 334.7 178 93.3
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 5.6e-90 334.3 178 93.3
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 5.6e-90 334.3 178 92.7
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 7.4e-90 334.0 177 93.8
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 7.4e-90 334.0 178 93.3
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 9.6e-90 333.6 178 92.7
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 9.6e-90 333.6 178 92.7
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 1.3e-89 333.2 178 93.3
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 1.3e-89 333.2 178 91.6
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.6e-89 332.8 178 92.7
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 1.6e-89 332.8 177 93.8
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 2.1e-89 332.4 178 91.6
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 2.1e-89 332.4 178 91.6
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 2.1e-89 332.4 178 93.3
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 2.8e-89 332.0 177 93.2
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 3.6e-89 331.6 178 91.6
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 6.2e-89 330.9 178 92.7
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 6.2e-89 330.9 178 92.7
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 1.1e-88 330.1 178 92.1
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 1.4e-88 329.7 178 90.4
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 1.4e-88 329.7 178 90.4
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 1.4e-88 329.7 178 90.4
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 1.8e-88 329.3 177 92.7
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 1.8e-88 329.3 178 92.1
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 2.4e-88 328.9 177 91.5
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 2.4e-88 328.9 178 90.4
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 2.4e-88 328.9 178 91.0
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 2.4e-88 328.9 183 91.3
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 3.1e-88 328.6 178 90.4
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 4.0e-88 328.2 178 89.9
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 4.0e-88 328.2 178 92.1
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 6.9e-88 327.4 178 91.6
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 6.9e-88 327.4 177 91.5
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 9.0e-88 327.0 178 90.4
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 9.0e-88 327.0 181 91.7
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 9.0e-88 327.0 178 91.6
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 1.5e-87 326.2 178 89.3
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 1.5e-87 326.2 178 89.3
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 2.0e-87 325.9 177 89.8
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 2.0e-87 325.9 178 89.3
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 3.4e-87 325.1 178 88.8
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 3.4e-87 325.1 177 89.8
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 4.5e-87 324.7 178 90.4
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 5.8e-87 324.3 178 89.9
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 7.6e-87 323.9 178 88.2
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 9.9e-87 323.6 178 88.2
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 9.9e-87 323.6 178 89.9
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 1.7e-86 322.8 174 92.0
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 2.2e-86 322.4 188 86.7
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 2.9e-86 322.0 177 89.3
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 2.9e-86 322.0 177 90.4
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 4.9e-86 321.2 180 87.8
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 4.9e-86 321.2 176 90.3
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 6.4e-86 320.9 178 87.6
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 6.4e-86 320.9 177 89.3
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 8.4e-86 320.5 178 88.8
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 1.4e-85 319.7 178 90.4
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 1.9e-85 319.3 178 89.9
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 2.4e-85 318.9 176 89.8
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 2.4e-85 318.9 177 90.4
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 3.2e-85 318.5 179 89.4
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 3.2e-85 318.5 178 88.2
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 4.2e-85 318.2 178 89.3
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 4.2e-85 318.2 178 89.3
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 4.6e-84 314.7 178 90.4
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 1.8e-83 312.8 178 86.0
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 3.0e-83 312.0 178 86.5
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 5.1e-83 311.2 167 92.8
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 5.1e-83 311.2 178 88.8
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 3.3e-82 308.5 179 87.2
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 4.3e-82 308.1 178 84.3
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 7.4e-82 307.4 178 84.3
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 7.4e-82 307.4 178 83.7
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.3e-81 306.6 178 86.5
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.3e-81 306.6 178 86.5
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 4.8e-81 304.7 178 86.0
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 4.0e-80 301.6 167 91.6
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 4.5e-79 298.1 178 83.7
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 2.9e-78 295.4 167 88.0
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 4.2e-77 291.6 155 92.9
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 1.2e-76 290.0 170 89.4
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 1.0e-75 287.0 154 92.9
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 2.3e-75 285.8 178 77.0
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 1.0e-70 270.4 178 80.3
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 5.0e-70 268.1 161 83.9
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 2.0e-63 246.1 161 80.7
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 3.4e-63 245.4 176 73.3
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 5.9e-63 244.6 176 73.9
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 1.1e-61 240.4 161 76.4
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 6.1e-60 234.6 178 70.8
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 2.6e-58 229.2 119 94.1
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 1.3e-57 226.9 173 63.6
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 1.4e-56 223.4 174 62.6
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 3.1e-56 222.2 174 60.9
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 3.1e-56 222.2 174 60.9
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 7.9e-52 207.6 167 67.7
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 1.4e-51 206.8 150 74.0
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 4.4e-50 201.8 177 54.2
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 2.7e-44 182.6 101 92.1
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 3.3e-42 175.6 160 65.0
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 9.7e-42 174.1 178 52.2
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 1.1e-40 170.6 98 85.7
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 7.0e-40 167.9 174 46.6
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 1.6e-39 166.8 174 45.4
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 1.6e-39 166.8 178 48.3
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 3.2e-37 159.1 180 50.6
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 5.2e-35 151.8 178 50.0
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 9.1e-32 141.0 95 78.9
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 1.2e-31 140.6 99 74.7
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 2.3e-30 136.3 92 77.2
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 1.5e-29 133.7 202 38.6
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 4.7e-28 128.6 92 72.8
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 4.0e-27 125.6 135 55.6
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 4.4e-26 122.1 168 38.7
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 2.2e-25 119.8 59 91.5
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 5.9e-23 111.7 82 69.5
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 1.7e-22 110.2 73 79.5
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 5.6e-21 105.1 60 86.7
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 8.3e-17 91.3 54 79.6
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 5.0e-14 82.0 45 84.4
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 5.6e-13 78.6 61 63.9
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 1.2e-10 70.9 62 66.1
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 2.4e-08 63.2 39 71.8
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 1.2e-07 60.8 38 71.1
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 4.6e-07 58.9 69 55.1


User provided reference genes

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