Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p019359 Quercus lobata HOM05D003730 ORTHO05D015085 1.0e-84 316.6 154 100.0
QL11p019363 Quercus lobata HOM05D003730 ORTHO05D015085 3.5e-24 115.5 70 80.0
TWI74G0344 Tripterygium wilfordii HOM05D003730 ORTHO05D004458 6.0e-16 88.2 63 69.8
TWI77G0750 Tripterygium wilfordii HOM05D003730 ORTHO05D004458 6.0e-16 88.2 63 69.8
Dinv35586 Davidia involucrata HOM05D003730 ORTHO05D004458 1.7e-15 86.7 63 71.4
Lj3g0005938 Lotus japonicus HOM05D003730 ORTHO05D004458 2.3e-15 86.3 63 69.8
Nn2g13382 Nelumbo nucifera HOM05D003730 ORTHO05D004458 3.0e-15 85.9 63 69.8
TAR636G1862 Trochodendron aralioides HOM05D003730 ORTHO05D004458 3.0e-15 85.9 63 68.3
Dinv37162 Davidia involucrata HOM05D003730 ORTHO05D004458 5.1e-15 85.1 63 68.3
Ciclev10012166m.g Citrus clementina HOM05D003730 ORTHO05D004458 6.6e-15 84.7 63 66.7
BcaB06g29015 Brassica carinata HOM05D003730 ORTHO05D004458 8.7e-15 84.3 63 68.3
BcaB06g29016 Brassica carinata HOM05D003730 ORTHO05D004458 8.7e-15 84.3 63 68.3
CSS0040011 Camellia sinensis var. sinensis HOM05D003730 ORTHO05D004458 8.7e-15 84.3 63 68.3
MBI14_g12122_MAGBIO Magnolia biondii HOM05D003730 ORTHO05D004458 8.7e-15 84.3 63 68.3
QL07p048679 Quercus lobata HOM05D003730 ORTHO05D004458 1.1e-14 84.0 63 69.8
MD04G1130500 Malus domestica HOM05D003730 ORTHO05D004458 1.5e-14 83.6 63 68.3
HPP92_018136 Vanilla planifolia HOM05D003730 ORTHO05D004458 1.5e-14 83.6 63 65.1
Actinidia13152 Actinidia chinensis HOM05D003730 ORTHO05D004458 1.9e-14 83.2 66 65.2
CiPaw.09G194500 Carya illinoinensis HOM05D003730 ORTHO05D004458 1.9e-14 83.2 63 66.7
Hma1.2p1_1889F.1_g306630 Hydrangea macrophylla HOM05D003730 ORTHO05D004458 1.9e-14 83.2 63 68.3
MD12G1143700 Malus domestica HOM05D003730 ORTHO05D004458 1.9e-14 83.2 63 66.7
Aqoxy2G02240 Aquilegia oxysepala HOM05D003730 ORTHO05D004458 2.5e-14 82.8 63 69.8
Prupe.6G257200 Prunus persica HOM05D003730 ORTHO05D004458 2.5e-14 82.8 63 66.7
THA.LOC104823415 Tarenaya hassleriana HOM05D003730 ORTHO05D004458 2.5e-14 82.8 63 65.1
RcHm_v2.0_Chr3g0466371 Rosa chinensis HOM05D003730 ORTHO05D004458 3.3e-14 82.4 63 68.3
Sed0018240 Sechium edule HOM05D003730 ORTHO05D004458 3.3e-14 82.4 63 65.1
TAR623G1158 Trochodendron aralioides HOM05D003730 ORTHO05D004458 3.3e-14 82.4 63 68.3
arahy.Tifrunner.gnm1.ann1.E6NKCB Arachis hypogaea HOM05D003730 ORTHO05D004458 4.3e-14 82.0 63 65.1
arahy.Tifrunner.gnm1.ann1.L41CIL Arachis hypogaea HOM05D003730 ORTHO05D004458 4.3e-14 82.0 63 65.1
BcaC02g07503 Brassica carinata HOM05D003730 ORTHO05D004458 4.3e-14 82.0 63 66.7
C04p66100 Brassica napus HOM05D003730 ORTHO05D004458 4.3e-14 82.0 63 66.7
BolC4t28114H Brassica oleracea HOM05D003730 ORTHO05D004458 4.3e-14 82.0 63 66.7
ClCG04G008110 Citrullus lanatus HOM05D003730 ORTHO05D004458 4.3e-14 82.0 63 66.7
MELO3C003137.2 Cucumis melo HOM05D003730 ORTHO05D004458 4.3e-14 82.0 63 66.7
CsaV3_4G025080 Cucumis sativus L. HOM05D003730 ORTHO05D004458 4.3e-14 82.0 63 66.7
DCAR_012103 Daucus carota HOM05D003730 ORTHO05D004458 4.3e-14 82.0 63 68.3
Hma1.2p1_0936F.1_g238830 Hydrangea macrophylla HOM05D003730 ORTHO05D004458 4.3e-14 82.0 63 66.7
Glyma.07G133200 Glycine max HOM05D003730 ORTHO05D004458 5.6e-14 81.6 62 66.1
PGR004G0886 Punica granatum HOM05D003730 ORTHO05D004458 5.6e-14 81.6 63 66.7
Lj1g0003421 Lotus japonicus HOM05D003730 ORTHO05D004458 7.3e-14 81.3 63 65.1
A04p28820 Brassica napus HOM05D003730 ORTHO05D004458 9.6e-14 80.9 63 65.1
BraA04t18359Z Brassica rapa HOM05D003730 ORTHO05D004458 9.6e-14 80.9 63 65.1
Ca_27652_v3 Cicer arietinum L. HOM05D003730 ORTHO05D004458 9.6e-14 80.9 63 65.1
Psat7g235680 Pisum sativum HOM05D003730 ORTHO05D004458 9.6e-14 80.9 63 65.1
Manes.09G092700 Manihot esculenta HOM05D003730 ORTHO05D004458 1.3e-13 80.5 63 65.1
Lalb_Chr03g0042331 Lupinus albus HOM05D003730 ORTHO05D004458 1.6e-13 80.1 63 61.9
PSO339G5845 Papaver somniferum HOM05D003730 ORTHO05D004458 1.6e-13 80.1 63 66.7
PSO513G0074 Papaver somniferum HOM05D003730 ORTHO05D004458 1.6e-13 80.1 63 66.7
arahy.Tifrunner.gnm1.ann1.CCZS04 Arachis hypogaea HOM05D003730 ORTHO05D004458 2.1e-13 79.7 63 63.5
arahy.Tifrunner.gnm1.ann1.D1PGNE Arachis hypogaea HOM05D003730 ORTHO05D004458 2.1e-13 79.7 63 63.5
Duzib093G1851 Durio zibethinus HOM05D003730 ORTHO05D004458 2.1e-13 79.7 62 62.9
Duzib128G1894 Durio zibethinus HOM05D003730 ORTHO05D004458 2.1e-13 79.7 63 63.5
Aa31LG5G23160 Aethionema arabicum HOM05D003730 ORTHO05D004458 2.8e-13 79.3 63 65.1
Glyma.18G182600 Glycine max HOM05D003730 ORTHO05D004458 2.8e-13 79.3 63 63.5
Os05g0110300 Oryza sativa ssp. japonica HOM05D003730 ORTHO05D004458 2.8e-13 79.3 63 63.5
Sp4g20020 Schrenkiella parvula HOM05D003730 ORTHO05D004458 2.8e-13 79.3 63 63.5
VMungo0331G0374 Vigna mungo HOM05D003730 ORTHO05D004458 2.8e-13 79.3 63 63.5
Carub.0004s1959 Capsella rubella HOM05D003730 ORTHO05D004458 3.6e-13 79.0 63 63.5
Gohir.D09G150600 Gossypium hirsutum HOM05D003730 ORTHO05D004458 3.6e-13 79.0 62 62.9
Gorai.006G171900 Gossypium raimondii HOM05D003730 ORTHO05D004458 3.6e-13 79.0 62 62.9
Lalb_Chr12g0209561 Lupinus albus HOM05D003730 ORTHO05D004458 3.6e-13 79.0 63 63.5
Phvul.008G119600 Phaseolus vulgaris HOM05D003730 ORTHO05D004458 3.6e-13 79.0 63 61.9
PGR031G0852 Punica granatum HOM05D003730 ORTHO05D004458 3.6e-13 79.0 63 61.9
VMungo1383G3507 Vigna mungo HOM05D003730 ORTHO05D004458 3.6e-13 79.0 63 63.5
Zm00001eb355850 Zea mays HOM05D003730 ORTHO05D004458 3.6e-13 79.0 63 63.5
Atru.chr8.1989 Acer truncatum HOM05D003730 ORTHO05D004458 4.8e-13 78.6 63 60.3
AT2G37660 Arabidopsis thaliana HOM05D003730 ORTHO05D004458 4.8e-13 78.6 63 61.9
CiPaw.10G146400 Carya illinoinensis HOM05D003730 ORTHO05D004458 4.8e-13 78.6 63 65.1
FvH4_6g13500 Fragaria vesca HOM05D003730 ORTHO05D004458 4.8e-13 78.6 60 68.3
FAN02G4300 Fragaria x ananassa HOM05D003730 ORTHO05D004458 4.8e-13 78.6 60 68.3
FAN05G3435 Fragaria x ananassa HOM05D003730 ORTHO05D004458 4.8e-13 78.6 60 68.3
FAN09G4346 Fragaria x ananassa HOM05D003730 ORTHO05D004458 4.8e-13 78.6 60 68.3
FAN14G3205 Fragaria x ananassa HOM05D003730 ORTHO05D004458 4.8e-13 78.6 60 68.3
FAN14G3787 Fragaria x ananassa HOM05D003730 ORTHO05D004458 4.8e-13 78.6 60 68.3
Medtr4g021815 Medicago truncatula HOM05D003730 ORTHO05D004458 4.8e-13 78.6 63 63.5
Phvul.010G011300 Phaseolus vulgaris HOM05D003730 ORTHO05D004458 4.8e-13 78.6 63 60.3
TPR.G1677 Trifolium pratense HOM05D003730 ORTHO05D004458 4.8e-13 78.6 86 52.3
GSVIVG01034152001 Vitis vinifera HOM05D003730 ORTHO05D004458 4.8e-13 78.6 62 61.3
AL4G34250 Arabidopsis lyrata HOM05D003730 ORTHO05D004458 6.2e-13 78.2 63 61.9
A05p08310 Brassica napus HOM05D003730 ORTHO05D004458 6.2e-13 78.2 63 61.9
C09p74290 Brassica napus HOM05D003730 ORTHO05D004458 6.2e-13 78.2 63 65.1
BolC9t60162H Brassica oleracea HOM05D003730 ORTHO05D004458 6.2e-13 78.2 63 65.1
BraA05t19796Z Brassica rapa HOM05D003730 ORTHO05D004458 6.2e-13 78.2 63 61.9
A10p33380 Brassica napus HOM05D003730 ORTHO05D004458 8.1e-13 77.8 63 65.1
CAN.G1685.1 Capsicum annuum HOM05D003730 ORTHO05D004458 8.1e-13 77.8 63 65.1
COL.COLO4_14783 Corchorus olitorius HOM05D003730 ORTHO05D004458 8.1e-13 77.8 63 58.7
Gohir.A09G155032 Gossypium hirsutum HOM05D003730 ORTHO05D004458 8.1e-13 77.8 62 61.3
Medtr7g062140 Medicago truncatula HOM05D003730 ORTHO05D004458 8.1e-13 77.8 63 61.9
Psat3g138600 Pisum sativum HOM05D003730 ORTHO05D004458 8.1e-13 77.8 63 61.9
Sp6g40210 Schrenkiella parvula HOM05D003730 ORTHO05D004458 8.1e-13 77.8 66 63.6
Sopen09g005650 Solanum pennellii HOM05D003730 ORTHO05D004458 8.1e-13 77.8 63 65.1
Thecc.05G037600 Theobroma cacao HOM05D003730 ORTHO05D004458 8.1e-13 77.8 62 59.7
Zm00001eb062770 Zea mays HOM05D003730 ORTHO05D004458 8.1e-13 77.8 63 60.3
Aqoxy3G01130 Aquilegia oxysepala HOM05D003730 ORTHO05D004458 1.1e-12 77.4 51 74.5
CDE04G1817 Ceratophyllum demersum HOM05D003730 ORTHO05D004458 1.1e-12 77.4 77 53.2
PGSC0003DMG400008830 Solanum tuberosum HOM05D003730 ORTHO05D004458 1.1e-12 77.4 63 63.5
TPR.G5554 Trifolium pratense HOM05D003730 ORTHO05D004458 1.1e-12 77.4 63 60.3
Ca_07559_v3 Cicer arietinum L. HOM05D003730 ORTHO05D004458 1.4e-12 77.0 63 58.7
Nitab4.5_0004639g0020 Nicotiana tabacum HOM05D003730 ORTHO05D004458 1.4e-12 77.0 51 72.5
Oeu010095.1 Olea europaea HOM05D003730 ORTHO05D004458 1.4e-12 77.0 63 65.1
Oeu036136.3 Olea europaea HOM05D003730 ORTHO05D004458 1.4e-12 77.0 63 63.5
Peaxi162Scf00165g00819 Petunia axillaris HOM05D003730 ORTHO05D004458 1.4e-12 77.0 63 65.1
DCAR_024060 Daucus carota HOM05D003730 ORTHO05D004458 1.8e-12 76.6 63 61.9
ECA248G3650 Erigeron canadensis HOM05D003730 ORTHO05D004458 1.8e-12 76.6 63 61.9
Os03g0822200 Oryza sativa ssp. japonica HOM05D003730 ORTHO05D004458 1.8e-12 76.6 62 59.7
Sabra06G0066200 Salix brachista HOM05D003730 ORTHO05D004458 1.8e-12 76.6 63 65.1
BraA10t45369Z Brassica rapa HOM05D003730 ORTHO05D004458 2.4e-12 76.3 63 63.5
CANSAT54G2707 Cannabis sativa HOM05D003730 ORTHO05D004458 2.4e-12 76.3 63 60.3
Manes.08G088900 Manihot esculenta HOM05D003730 ORTHO05D004458 2.4e-12 76.3 63 63.5
Potri.006G086800 Populus trichocarpa HOM05D003730 ORTHO05D004458 2.4e-12 76.3 63 65.1
SalBow4G0960 Salvia bowleyana HOM05D003730 ORTHO05D004458 2.4e-12 76.3 63 61.9
Solyc09g010930.4 Solanum lycopersicum HOM05D003730 ORTHO05D004458 2.4e-12 76.3 63 63.5
vmacro08647 Vaccinium macrocarpon HOM05D003730 ORTHO05D004458 2.4e-12 76.3 63 63.5
CARHR131920 Cardamine hirsuta HOM05D003730 ORTHO05D004458 3.1e-12 75.9 63 60.3
Cfa017360 Carpinus fangiana HOM05D003730 ORTHO05D004458 4.0e-12 75.5 63 63.5
AL6G11480 Arabidopsis lyrata HOM05D003730 ORTHO05D004458 5.3e-12 75.1 66 62.1
AT5G02240 Arabidopsis thaliana HOM05D003730 ORTHO05D004458 5.3e-12 75.1 66 62.1
MSTRG.5656 Avicennia marina HOM05D003730 ORTHO05D004458 5.3e-12 75.1 63 63.5
Haze_20813 Corylus avellana HOM05D003730 ORTHO05D004458 5.3e-12 75.1 63 63.5
Sc20g0005000 Simmondsia chinensis HOM05D003730 ORTHO05D004458 5.3e-12 75.1 63 65.1
vmacro20165 Vaccinium macrocarpon HOM05D003730 ORTHO05D004458 5.3e-12 75.1 65 60.0
Carub.0006s0108 Capsella rubella HOM05D003730 ORTHO05D004458 6.9e-12 74.7 66 59.1
Thhalv10016917m.g Eutrema salsugineum HOM05D003730 ORTHO05D004458 6.9e-12 74.7 63 60.3
Actinidia26475 Actinidia chinensis HOM05D003730 ORTHO05D004458 9.0e-12 74.3 63 61.9
CARHR211130 Cardamine hirsuta HOM05D003730 ORTHO05D004458 9.0e-12 74.3 66 62.1
CDE08G1340 Ceratophyllum demersum HOM05D000714 ORTHO05D000544 9.0e-12 74.3 62 59.7
Rhsim05G0193900 Rhododendron simsii HOM05D003730 ORTHO05D004458 9.0e-12 74.3 63 61.9
ATR0559G007 Amborella trichopoda HOM05D003730 ORTHO05D004458 1.2e-11 73.9 63 58.7
BcaB02g09264 Brassica carinata HOM05D003730 ORTHO05D004458 1.2e-11 73.9 63 60.3
BcaB02g09265 Brassica carinata HOM05D003730 ORTHO05D004458 1.2e-11 73.9 63 60.3
Thhalv10014474m.g Eutrema salsugineum HOM05D003730 ORTHO05D004458 1.2e-11 73.9 66 59.1
HanXRQChr01g0003071 Helianthus annuus HOM05D003730 ORTHO05D004458 1.5e-11 73.6 63 58.7
Lj3A966G51 Lonicera japonica HOM05D003730 ORTHO05D004458 1.5e-11 73.6 63 61.9
Lsat_1_v5_gn_5_149640 Lactuca sativa HOM05D003730 ORTHO05D004458 2.0e-11 73.2 63 60.3
Eucgr.A01273 Eucalyptus grandis HOM05D003730 ORTHO05D004458 7.6e-11 71.2 63 57.1
Lj2A93T84 Lonicera japonica HOM05D003730 ORTHO05D004458 7.6e-11 71.2 80 52.5
SEGI_20216 Sequoiadendron giganteum HOM05D003730 ORTHO05D004458 9.9e-11 70.9 63 58.7
Migut.J00321 Erythranthe guttata HOM05D003730 ORTHO05D004458 1.3e-10 70.5 63 58.7
SGA_v2.0_scaffold75G24956 Striga asiatica HOM05D000181 ORTHO05D003134 1.7e-10 70.1 56 58.9
THA.LOC104816264 Tarenaya hassleriana HOM05D003730 ORTHO05D004458 1.7e-10 70.1 62 59.7
Hund10632 Selenicereus undatus HOM05D003730 ORTHO05D004458 2.2e-10 69.7 62 59.7
Aa31LG1G22500 Aethionema arabicum HOM05D005507 ORTHO05D007316 4.2e-09 65.5 63 55.6
unitig_8.g4054 Utricularia gibba HOM05D003730 ORTHO05D004458 7.1e-09 64.7 62 54.8
AUR62041348 Chenopodium quinoa HOM05D003730 ORTHO05D004458 9.3e-09 64.3 63 57.1
Pp3c9_11060 Physcomitrium patens HOM05D003730 ORTHO05D004458 9.3e-09 64.3 63 50.8
AUR62041751 Chenopodium quinoa HOM05D003730 ORTHO05D004458 1.2e-08 63.9 63 57.1
SMO141G0146 Selaginella moellendorffii HOM05D003730 ORTHO05D004458 3.5e-08 62.4 50 64.0
AagrBONN_evm.TU.Sc2ySwM_117.3727 Anthoceros agrestis HOM05D003730 ORTHO05D004458 6.0e-08 61.6 58 55.2
CBR_g8964 Chara braunii HOM05D003730 ORTHO05D004458 7.9e-08 61.2 80 45.0
Pp3c15_16990 Physcomitrium patens HOM05D003730 ORTHO05D004458 1.0e-07 60.8 53 54.7
Mapoly0187s0017 Marchantia polymorpha HOM05D003730 ORTHO05D004458 3.9e-07 58.9 51 56.9
SMO118G0186 Selaginella moellendorffii HOM05D003730 ORTHO05D004458 3.9e-07 58.9 58 50.0
MSTRG.5810 Avicennia marina HOM05D003730 ORTHO05D004458 1.1e-06 57.4 70 50.0
VMungo1383G0388 Vigna mungo HOM05D003730 ORTHO05D004458 4.3e-06 55.5 76 40.8
FvH4_5g28981 Fragaria vesca HOM05D003730 ORTHO05D004458 7.4e-06 54.7 45 57.8


User provided reference genes

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