Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p019306 Quercus lobata HOM05D005078 ORTHO05D007574 2.7e-61 238.4 115 100.0
QL08p030853 Quercus lobata HOM05D005078 ORTHO05D007574 6.4e-47 190.7 172 61.6
QL09p047099 Quercus lobata HOM05D005078 ORTHO05D007574 8.4e-47 190.3 143 69.9
QL11p019326 Quercus lobata HOM05D005078 ORTHO05D007574 6.0e-45 184.1 172 59.9
QL08p030872 Quercus lobata HOM05D005078 ORTHO05D007574 7.9e-45 183.7 172 59.3
Haze_10783 Corylus avellana HOM05D005078 ORTHO05D007574 3.9e-36 154.8 172 51.7
Cfa005576 Carpinus fangiana HOM05D005078 ORTHO05D007574 8.7e-36 153.7 172 51.7
Atru.chr6.903 Acer truncatum HOM05D005078 ORTHO05D007574 1.5e-35 152.9 172 50.0
Cc02_g21860 Coffea canephora HOM05D005078 ORTHO05D007574 8.1e-34 147.1 172 49.4
CSS0009626 Camellia sinensis var. sinensis HOM05D005078 ORTHO05D007574 1.1e-33 146.7 172 48.3
CSS0037915 Camellia sinensis var. sinensis HOM05D005078 ORTHO05D007574 1.1e-33 146.7 172 48.3
Cpa.g.sc63.26 Carica papaya HOM05D005078 ORTHO05D007574 1.1e-33 146.7 172 49.4
CiPaw.06G150900 Carya illinoinensis HOM05D005078 ORTHO05D007574 2.4e-33 145.6 172 50.0
DCAR_001802 Daucus carota HOM05D005078 ORTHO05D007574 4.0e-33 144.8 172 48.8
Actinidia04428 Actinidia chinensis HOM05D005078 ORTHO05D007574 1.2e-32 143.3 172 47.7
Lj9A318G98 Lonicera japonica HOM05D005078 ORTHO05D007574 1.2e-32 143.3 173 49.1
Nitab4.5_0000078g0180 Nicotiana tabacum HOM05D005078 ORTHO05D007574 1.2e-32 143.3 150 54.7
MD08G1222200 Malus domestica HOM05D005078 ORTHO05D007574 2.6e-32 142.1 172 49.4
MD15G1415600 Malus domestica HOM05D005078 ORTHO05D007574 2.6e-32 142.1 172 48.8
Prupe.1G560000 Prunus persica HOM05D005078 ORTHO05D007574 4.5e-32 141.4 172 49.4
CANSAT56G3597 Cannabis sativa HOM05D005078 ORTHO05D007574 1.7e-31 139.4 179 48.6
Manes.10G130600 Manihot esculenta HOM05D005078 ORTHO05D007574 1.7e-31 139.4 172 47.1
Nitab4.5_0010375g0010 Nicotiana tabacum HOM05D005078 ORTHO05D007574 1.7e-31 139.4 173 48.6
Rhsim05G0111000 Rhododendron simsii HOM05D005078 ORTHO05D007574 1.7e-31 139.4 172 47.7
Thecc.02G143700 Theobroma cacao HOM05D005078 ORTHO05D007574 1.7e-31 139.4 172 47.1
FAN18G1729 Fragaria x ananassa HOM05D005078 ORTHO05D007574 2.2e-31 139.0 171 48.5
ClCG09G013630 Citrullus lanatus HOM05D005078 ORTHO05D007574 3.8e-31 138.3 172 45.9
MELO3C018688.2 Cucumis melo HOM05D005078 ORTHO05D007574 3.8e-31 138.3 172 45.9
CsaV3_7G006040 Cucumis sativus L. HOM05D005078 ORTHO05D007574 3.8e-31 138.3 172 45.9
RcHm_v2.0_Chr7g0225491 Rosa chinensis HOM05D005078 ORTHO05D007574 6.5e-31 137.5 171 49.1
PGSC0003DMG400005500 Solanum tuberosum HOM05D005078 ORTHO05D007574 6.5e-31 137.5 173 48.0
FAN04G1076 Fragaria x ananassa HOM05D005078 ORTHO05D007574 8.4e-31 137.1 171 48.0
FAN13G1064 Fragaria x ananassa HOM05D005078 ORTHO05D007574 1.1e-30 136.7 171 48.0
Ciclev10000359m.g Citrus clementina HOM05D005078 ORTHO05D007574 1.4e-30 136.3 172 47.7
Peaxi162Scf00003g03733 Petunia axillaris HOM05D005078 ORTHO05D007574 1.4e-30 136.3 172 46.5
TAR628G0147 Trochodendron aralioides HOM05D005078 ORTHO05D007574 1.4e-30 136.3 173 48.0
COL.COLO4_20871 Corchorus olitorius HOM05D005078 ORTHO05D007574 1.9e-30 136.0 172 46.5
Potri.006G254900 Populus trichocarpa HOM05D005078 ORTHO05D007574 1.9e-30 136.0 172 47.7
Duzib052G0049 Durio zibethinus HOM05D005078 ORTHO05D007574 2.5e-30 135.6 172 45.9
Oeu037204.1 Olea europaea HOM05D005078 ORTHO05D007574 3.2e-30 135.2 172 46.5
Sed0005211 Sechium edule HOM05D005078 ORTHO05D007574 5.5e-30 134.4 173 46.2
arahy.Tifrunner.gnm1.ann1.TCU5QQ Arachis hypogaea HOM05D005078 ORTHO05D007574 9.3e-30 133.7 137 52.6
Sabra06G0199100 Salix brachista HOM05D005078 ORTHO05D007574 9.3e-30 133.7 172 47.1
Solyc10g047050.2 Solanum lycopersicum HOM05D005078 ORTHO05D007574 9.3e-30 133.7 173 46.8
vmacro19912 Vaccinium macrocarpon HOM05D005078 ORTHO05D007574 9.3e-30 133.7 172 45.9
HanXRQChr11g0337601 Helianthus annuus HOM05D005078 ORTHO05D007574 1.6e-29 132.9 135 55.6
Sed0011242 Sechium edule HOM05D005078 ORTHO05D007574 1.6e-29 132.9 172 44.8
Lsat_1_v5_gn_7_79780 Lactuca sativa HOM05D005078 ORTHO05D007574 2.1e-29 132.5 121 61.2
TWI59G0763 Tripterygium wilfordii HOM05D005078 ORTHO05D007574 2.1e-29 132.5 172 45.3
GSVIVG01029707001 Vitis vinifera HOM05D005078 ORTHO05D007574 2.7e-29 132.1 131 58.0
ECA236G3503 Erigeron canadensis HOM05D005078 ORTHO05D007574 3.5e-29 131.7 135 55.6
Sopen10g017000 Solanum pennellii HOM05D005078 ORTHO05D007574 4.6e-29 131.3 173 46.2
CAN.G1.26 Capsicum annuum HOM05D005078 ORTHO05D007574 6.0e-29 131.0 135 54.8
Gohir.A03G171500 Gossypium hirsutum HOM05D005078 ORTHO05D007574 1.0e-28 130.2 172 44.2
Gohir.D02G194900 Gossypium hirsutum HOM05D005078 ORTHO05D007574 1.0e-28 130.2 172 44.2
Gorai.005G217700 Gossypium raimondii HOM05D005078 ORTHO05D007574 1.0e-28 130.2 172 44.2
Eucgr.I02694 Eucalyptus grandis HOM05D005078 ORTHO05D007574 2.3e-28 129.0 172 44.2
PGR142G3913 Punica granatum HOM05D005078 ORTHO05D007574 3.9e-28 128.3 172 45.3
MBI03_g13502_MAGBIO Magnolia biondii HOM05D005078 ORTHO05D007574 5.1e-28 127.9 173 44.5
Oeu047373.1 Olea europaea HOM05D005078 ORTHO05D007574 5.1e-28 127.9 135 53.3
Glyma.08G075100 Glycine max HOM05D005078 ORTHO05D007574 6.7e-28 127.5 172 44.2
Phvul.002G206400 Phaseolus vulgaris HOM05D005078 ORTHO05D007574 6.7e-28 127.5 172 43.6
Sc14g0003200 Simmondsia chinensis HOM05D005078 ORTHO05D007574 8.7e-28 127.1 171 43.3
Carub.0003s1960 Capsella rubella HOM05D005078 ORTHO05D007574 1.1e-27 126.7 172 44.8
Lalb_Chr07g0189431 Lupinus albus HOM05D005078 ORTHO05D007574 1.5e-27 126.3 172 43.6
arahy.Tifrunner.gnm1.ann1.BEU0Z4 Arachis hypogaea HOM05D005078 ORTHO05D007574 1.9e-27 125.9 172 42.4
arahy.Tifrunner.gnm1.ann1.T96GLE Arachis hypogaea HOM05D005078 ORTHO05D007574 1.9e-27 125.9 172 42.4
THA.LOC104826527 Tarenaya hassleriana HOM05D005078 ORTHO05D007574 1.9e-27 125.9 172 43.6
BcaC09g48935 Brassica carinata HOM05D005078 ORTHO05D007574 2.5e-27 125.6 172 44.8
A01p34970 Brassica napus HOM05D005078 ORTHO05D007574 2.5e-27 125.6 172 44.8
C01p44380 Brassica napus HOM05D005078 ORTHO05D007574 2.5e-27 125.6 172 44.8
BolC1t04403H Brassica oleracea HOM05D005078 ORTHO05D007574 2.5e-27 125.6 172 44.8
BraA01t03580Z Brassica rapa HOM05D005078 ORTHO05D007574 2.5e-27 125.6 172 44.8
Thhalv10020106m.g Eutrema salsugineum HOM05D005078 ORTHO05D007574 2.5e-27 125.6 172 44.2
Ca_18334_v3 Cicer arietinum L. HOM05D005078 ORTHO05D007574 7.4e-27 124.0 172 43.0
BcaB04g20681 Brassica carinata HOM05D005078 ORTHO05D007574 1.3e-26 123.2 172 44.2
CARHR095240 Cardamine hirsuta HOM05D005078 ORTHO05D007574 1.6e-26 122.9 172 43.6
Glyma.05G120400 Glycine max HOM05D005078 ORTHO05D007574 1.6e-26 122.9 172 43.0
Sp3g17760 Schrenkiella parvula HOM05D005078 ORTHO05D007574 1.6e-26 122.9 172 43.6
VMungo0251G0911 Vigna mungo HOM05D005078 ORTHO05D007574 1.6e-26 122.9 168 45.2
AL3G33190 Arabidopsis lyrata HOM05D005078 ORTHO05D007574 2.8e-26 122.1 172 43.6
AT3G19720 Arabidopsis thaliana HOM05D005078 ORTHO05D007574 2.8e-26 122.1 172 43.6
TWI23G1171 Tripterygium wilfordii HOM05D005078 ORTHO05D007574 8.2e-26 120.6 179 41.3
Lj4g0026324 Lotus japonicus HOM05D005078 ORTHO05D007574 1.4e-25 119.8 172 41.9
Medtr4g094300 Medicago truncatula HOM05D005078 ORTHO05D007574 1.8e-25 119.4 172 41.3
TPR.G31481 Trifolium pratense HOM05D005078 ORTHO05D007574 4.1e-25 118.2 172 41.9
Aqoxy6G00300 Aquilegia oxysepala HOM05D005078 ORTHO05D007574 1.2e-24 116.7 168 41.7
Psat7g097600 Pisum sativum HOM05D005078 ORTHO05D007574 2.6e-24 115.5 172 41.3
MSTRG.16563 Avicennia marina HOM05D005078 ORTHO05D007574 5.9e-24 114.4 171 42.1
Aa31LG8G6520 Aethionema arabicum HOM05D005078 ORTHO05D007574 1.3e-23 113.2 205 37.1
ATR0090G021 Amborella trichopoda HOM05D005078 ORTHO05D007574 6.5e-23 110.9 173 41.0
Dinv19325 Davidia involucrata HOM05D005078 ORTHO05D007574 6.5e-23 110.9 100 59.0
SGA_v2.0_scaffold332G48941 Striga asiatica HOM05D005078 ORTHO05D007574 6.5e-23 110.9 189 39.2
Hund06705 Selenicereus undatus HOM05D005078 ORTHO05D007574 5.5e-22 107.8 172 40.1
Migut.B00641 Erythranthe guttata HOM05D005078 ORTHO05D007574 1.2e-21 106.7 172 39.5
HPP92_016129 Vanilla planifolia HOM05D005078 ORTHO05D007574 1.6e-21 106.3 173 39.9
SEGI_00685 Sequoiadendron giganteum HOM05D005078 ORTHO05D007574 3.5e-21 105.1 170 38.8
Zm00001eb408290 Zea mays HOM05D005078 ORTHO05D007574 3.5e-21 105.1 159 43.4
PSO170G4843 Papaver somniferum HOM05D005078 ORTHO05D007574 6.1e-21 104.4 174 39.7
PSO528G0068 Papaver somniferum HOM05D005078 ORTHO05D007574 2.3e-20 102.4 174 39.1
Dinv24223 Davidia involucrata HOM05D005078 ORTHO05D007574 6.3e-18 94.4 141 44.0
SMO169G0059 Selaginella moellendorffii HOM05D005078 ORTHO05D007574 6.3e-18 94.4 158 40.5
FAN08G3311 Fragaria x ananassa HOM05D005078 ORTHO05D007574 6.9e-17 90.9 157 40.8
Pp3c1_7590 Physcomitrium patens HOM05D005078 ORTHO05D007574 2.6e-16 89.0 169 34.3
Ah.09g232120 Amaranthus hybridus HOM05D005078 ORTHO05D007574 3.4e-16 88.6 160 38.1
EL10Ac8g19337 Beta vulgaris HOM05D005078 ORTHO05D007574 3.4e-16 88.6 157 38.9
AUR62027389 Chenopodium quinoa HOM05D005078 ORTHO05D007574 7.7e-16 87.4 160 36.9
AUR62031303 Chenopodium quinoa HOM05D005078 ORTHO05D007574 7.7e-16 87.4 160 36.9
CBR_g24372 Chara braunii HOM05D005078 ORTHO05D007574 5.0e-15 84.7 104 47.1
Pp3c2_33000 Physcomitrium patens HOM05D005078 ORTHO05D007574 8.5e-15 84.0 167 33.5
TPR.G8453 Trifolium pratense HOM05D005078 ORTHO05D007574 2.1e-13 79.3 69 55.1
SalBow5G1047 Salvia bowleyana HOM05D005078 ORTHO05D007574 3.9e-12 75.1 197 31.5
TPR.G31207 Trifolium pratense HOM05D005078 ORTHO05D007574 5.1e-12 74.7 123 44.7
Pp3c2_33410 Physcomitrium patens HOM05D005078 ORTHO05D007574 7.4e-11 70.9 167 32.3
Dinv24226 Davidia involucrata HOM05D005078 ORTHO05D003408 6.3e-10 67.8 63 57.1
Cre10.g433050 Chlamydomonas reinhardtii HOM05D005078 ORTHO05D007574 4.1e-09 65.1 168 29.8
Mapoly0079s0059 Marchantia polymorpha HOM05D005078 ORTHO05D007574 1.2e-08 63.5 40 70.0
CDE08G0182 Ceratophyllum demersum HOM05D005078 ORTHO05D007574 8.5e-07 57.4 31 83.9


User provided reference genes

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