Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 2.0e-59 232.3 119 100.0
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 5.7e-30 134.4 75 92.0
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 5.7e-30 134.4 96 75.0
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 1.1e-28 130.2 75 88.0
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 1.4e-28 129.8 94 72.3
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 5.3e-28 127.9 75 85.3
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 1.2e-27 126.7 97 69.1
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 1.5e-27 126.3 75 85.3
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 2.0e-27 125.9 75 85.3
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 2.0e-27 125.9 75 85.3
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 2.6e-27 125.6 106 65.1
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 3.4e-27 125.2 97 67.0
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 4.5e-27 124.8 94 68.1
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 5.8e-27 124.4 75 84.0
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 7.6e-27 124.0 75 81.3
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 1.0e-26 123.6 94 72.3
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 1.3e-26 123.2 75 82.7
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 1.7e-26 122.9 75 82.7
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 2.2e-26 122.5 75 78.7
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 2.2e-26 122.5 75 78.7
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 3.8e-26 121.7 75 80.0
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 5.0e-26 121.3 75 81.3
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 8.4e-26 120.6 94 67.0
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 1.4e-25 119.8 94 64.9
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.9e-25 119.4 94 66.0
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.9e-25 119.4 94 66.0
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 2.5e-25 119.0 94 66.0
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 2.5e-25 119.0 75 82.7
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 4.2e-25 118.2 75 78.7
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 4.2e-25 118.2 75 78.7
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 5.5e-25 117.9 94 67.0
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 5.5e-25 117.9 75 78.7
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 5.5e-25 117.9 75 80.0
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 7.2e-25 117.5 94 64.9
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 9.3e-25 117.1 94 64.9
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 1.2e-24 116.7 97 61.9
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 1.2e-24 116.7 94 64.9
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 1.6e-24 116.3 72 80.6
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 1.6e-24 116.3 69 88.4
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 2.1e-24 115.9 75 77.3
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 2.1e-24 115.9 75 74.7
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 2.1e-24 115.9 75 77.3
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 2.7e-24 115.5 94 62.8
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 7.9e-24 114.0 114 56.1
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 7.9e-24 114.0 75 74.7
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 7.9e-24 114.0 75 74.7
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 7.9e-24 114.0 71 80.3
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 1.0e-23 113.6 75 78.7
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 1.0e-23 113.6 94 62.8
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 1.0e-23 113.6 94 62.8
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 1.0e-23 113.6 69 82.6
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 1.3e-23 113.2 94 63.8
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 1.3e-23 113.2 75 78.7
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 1.8e-23 112.8 75 76.0
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 1.8e-23 112.8 75 74.7
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 2.3e-23 112.5 74 75.7
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 2.3e-23 112.5 75 73.3
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 3.0e-23 112.1 73 74.0
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 3.9e-23 111.7 97 60.8
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 5.1e-23 111.3 94 62.8
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 8.7e-23 110.5 74 74.3
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 1.1e-22 110.2 75 74.7
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 1.5e-22 109.8 94 59.6
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 1.5e-22 109.8 94 60.6
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 1.5e-22 109.8 94 61.7
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 1.5e-22 109.8 94 59.6
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 1.9e-22 109.4 94 61.7
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 1.9e-22 109.4 75 73.3
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.9e-22 109.4 78 69.2
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 1.9e-22 109.4 69 79.7
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 2.5e-22 109.0 76 76.3
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.5e-22 109.0 94 61.7
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 2.5e-22 109.0 94 61.7
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 3.3e-22 108.6 75 72.0
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 3.3e-22 108.6 89 59.6
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 3.3e-22 108.6 75 68.0
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 5.7e-22 107.8 75 70.7
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 5.7e-22 107.8 73 74.0
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 5.7e-22 107.8 94 60.6
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 5.7e-22 107.8 75 70.7
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 7.4e-22 107.5 75 69.3
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 7.4e-22 107.5 75 69.3
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 7.4e-22 107.5 75 70.7
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 9.7e-22 107.1 75 69.3
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 9.7e-22 107.1 75 69.3
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 9.7e-22 107.1 75 70.7
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 1.3e-21 106.7 94 59.6
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 1.6e-21 106.3 75 68.0
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 1.6e-21 106.3 76 75.0
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 2.2e-21 105.9 75 69.3
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 2.2e-21 105.9 99 55.6
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 2.2e-21 105.9 99 55.6
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 2.8e-21 105.5 75 68.0
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 2.8e-21 105.5 94 58.5
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 3.7e-21 105.1 75 66.7
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 3.7e-21 105.1 75 66.7
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 3.7e-21 105.1 75 68.0
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 3.7e-21 105.1 75 68.0
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 3.7e-21 105.1 69 72.5
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 3.7e-21 105.1 69 72.5
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 3.7e-21 105.1 69 75.4
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 4.8e-21 104.8 75 68.0
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 4.8e-21 104.8 75 68.0
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 4.8e-21 104.8 97 54.6
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 6.3e-21 104.4 98 55.1
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 8.2e-21 104.0 75 66.7
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 8.2e-21 104.0 75 68.0
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 1.1e-20 103.6 94 55.3
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 1.1e-20 103.6 75 68.0
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 1.4e-20 103.2 69 75.4
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 1.4e-20 103.2 74 68.9
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 3.1e-20 102.1 75 68.0
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 4.1e-20 101.7 75 72.0
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 5.3e-20 101.3 77 66.2
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 6.9e-20 100.9 75 64.0
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 6.9e-20 100.9 75 64.0
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 9.0e-20 100.5 75 62.7
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 2.0e-19 99.4 77 62.3
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.9e-18 95.5 66 69.7
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 3.8e-18 95.1 76 60.5
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 1.4e-17 93.2 94 50.0
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 1.9e-17 92.8 77 58.4
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 4.2e-17 91.7 63 69.8
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 1.4e-15 86.7 64 70.3
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 2.0e-14 82.8 79 51.9
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.5e-14 82.4 67 64.2
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 6.3e-13 77.8 80 53.8
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 1.8e-12 76.3 135 38.5
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 9.1e-12 73.9 94 39.4
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 7.7e-11 70.9 75 46.7
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 2.2e-10 69.3 94 38.3
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 6.5e-10 67.8 94 39.4
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 6.5e-10 67.8 94 39.4
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 6.5e-10 67.8 74 45.9
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.1e-09 67.0 51 60.8
TAR381G0540 Trochodendron aralioides HOM05D004322 ORTHO05D005033 1.9e-09 66.2 60 61.7
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 5.5e-09 64.7 38 81.6
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 2.7e-08 62.4 35 88.6


User provided reference genes

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