Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p018723 Quercus lobata HOM05D003896 ORTHO05D004517 9.9e-48 193.0 88 100.0
Nn5g28709 Nelumbo nucifera HOM05D003896 ORTHO05D004517 5.3e-33 144.1 80 78.8
CDE04G2322 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 6.9e-33 143.7 69 88.4
Prupe.1G560700 Prunus persica HOM05D003896 ORTHO05D004517 1.5e-32 142.5 68 91.2
PGR142G1796 Punica granatum HOM05D003896 ORTHO05D004517 2.0e-32 142.1 68 91.2
MELO3C019495.2 Cucumis melo HOM05D003896 ORTHO05D004517 4.5e-32 141.0 68 86.8
Dinv19332 Davidia involucrata HOM05D003896 ORTHO05D004517 7.6e-32 140.2 67 88.1
Eucgr.I02701 Eucalyptus grandis HOM05D003896 ORTHO05D004517 7.6e-32 140.2 68 86.8
MBI13_g20498_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 9.9e-32 139.8 70 84.3
MBI13_g29655_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 1.3e-31 139.4 71 84.5
Sed0011383 Sechium edule HOM05D003896 ORTHO05D004517 1.3e-31 139.4 69 85.5
FAN13G2961 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.7e-31 139.0 74 81.1
CsaV3_3G018780 Cucumis sativus L. HOM05D003896 ORTHO05D004517 2.2e-31 138.7 68 85.3
RcHm_v2.0_Chr7g0225181 Rosa chinensis HOM05D003896 ORTHO05D004517 2.2e-31 138.7 69 84.1
Aa31LG2G8780 Aethionema arabicum HOM05D003896 ORTHO05D004517 2.9e-31 138.3 71 84.5
Sed0019459 Sechium edule HOM05D003896 ORTHO05D004517 3.8e-31 137.9 68 86.8
Thecc.02G044000 Theobroma cacao HOM05D003896 ORTHO05D004517 3.8e-31 137.9 68 86.8
Manes.02G178600 Manihot esculenta HOM05D003896 ORTHO05D004517 4.9e-31 137.5 68 86.8
Manes.18G091100 Manihot esculenta HOM05D003896 ORTHO05D004517 4.9e-31 137.5 68 85.3
Actinidia38960 Actinidia chinensis HOM05D003896 ORTHO05D004517 6.4e-31 137.1 68 85.3
Aqoxy2G00844 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 6.4e-31 137.1 68 85.3
BcaB03g14560 Brassica carinata HOM05D003896 ORTHO05D004517 1.1e-30 136.3 71 81.7
FvH4_5g30500 Fragaria vesca HOM05D003896 ORTHO05D004517 1.1e-30 136.3 68 85.3
FAN04G1676 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.1e-30 136.3 68 85.3
FAN18G4256 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.1e-30 136.3 68 85.3
Glyma.08G181800 Glycine max HOM05D003896 ORTHO05D004517 1.1e-30 136.3 68 83.8
Atru.chr6.939 Acer truncatum HOM05D003896 ORTHO05D004517 1.4e-30 136.0 68 85.3
Actinidia00232 Actinidia chinensis HOM05D003896 ORTHO05D004517 1.4e-30 136.0 68 85.3
arahy.Tifrunner.gnm1.ann1.D7TB4J Arachis hypogaea HOM05D003896 ORTHO05D004517 1.4e-30 136.0 88 65.9
BolC5t30061H Brassica oleracea HOM05D003896 ORTHO05D004517 1.4e-30 136.0 73 80.8
Haze_10788 Corylus avellana HOM05D003896 ORTHO05D004517 1.4e-30 136.0 69 84.1
Potri.002G069200 Populus trichocarpa HOM05D003896 ORTHO05D004517 1.4e-30 136.0 68 86.8
THA.LOC109116537 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 1.9e-30 135.6 68 85.3
TWI14G0008 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 1.9e-30 135.6 68 85.3
TAR628G1659 Trochodendron aralioides HOM05D003896 ORTHO05D004517 1.9e-30 135.6 68 83.8
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 2.5e-30 135.2 68 85.3
arahy.Tifrunner.gnm1.ann1.EN81KK Arachis hypogaea HOM05D003896 ORTHO05D004517 2.5e-30 135.2 68 80.9
Glyma.15G050500 Glycine max HOM05D003896 ORTHO05D004517 2.5e-30 135.2 68 82.4
MD08G1223400 Malus domestica HOM05D003896 ORTHO05D004517 2.5e-30 135.2 68 83.8
CSS0003096 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 4.2e-30 134.4 68 86.8
CSS0009103 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 4.2e-30 134.4 68 86.8
Potri.002G069301 Populus trichocarpa HOM05D003896 ORTHO05D004517 4.2e-30 134.4 69 81.2
arahy.Tifrunner.gnm1.ann1.Q4HF2T Arachis hypogaea HOM05D003896 ORTHO05D004517 5.5e-30 134.0 68 85.3
BcaC05g25441 Brassica carinata HOM05D003896 ORTHO05D004517 5.5e-30 134.0 68 83.8
CANSAT11G1560 Cannabis sativa HOM05D003896 ORTHO05D004517 5.5e-30 134.0 68 85.3
CiPaw.05G040300 Carya illinoinensis HOM05D003896 ORTHO05D004517 7.1e-30 133.7 68 83.8
AL1G27180 Arabidopsis lyrata HOM05D003896 ORTHO05D004517 9.3e-30 133.3 69 81.2
AT1G15120 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 9.3e-30 133.3 68 82.4
arahy.Tifrunner.gnm1.ann1.MYBE61 Arachis hypogaea HOM05D003896 ORTHO05D004517 9.3e-30 133.3 69 82.6
Sp1g13460 Schrenkiella parvula HOM05D003896 ORTHO05D004517 9.3e-30 133.3 69 81.2
TWI23G0468 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 9.3e-30 133.3 68 82.4
VMungo0540G0553 Vigna mungo HOM05D000025 ORTHO05D000136 9.3e-30 133.3 69 81.2
CARHR015640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 1.2e-29 132.9 68 82.4
ATR0772G203 Amborella trichopoda HOM05D003896 ORTHO05D004517 1.6e-29 132.5 68 85.3
BolC8t52063H Brassica oleracea HOM05D003896 ORTHO05D004517 1.6e-29 132.5 69 81.2
A08p31730 Brassica napus HOM05D003896 ORTHO05D004517 2.7e-29 131.7 69 79.7
C08p17020 Brassica napus HOM05D003896 ORTHO05D004517 2.7e-29 131.7 69 79.7
BolC8t49327H Brassica oleracea HOM05D003896 ORTHO05D004517 2.7e-29 131.7 69 79.7
Phvul.006G209400 Phaseolus vulgaris HOM05D003896 ORTHO05D004517 2.7e-29 131.7 68 79.4
Sc02g0004100 Simmondsia chinensis HOM05D003896 ORTHO05D004517 2.7e-29 131.7 68 83.8
BcaC07g38769 Brassica carinata HOM05D003896 ORTHO05D004517 3.5e-29 131.3 68 80.9
Duzib052G0314 Durio zibethinus HOM05D003896 ORTHO05D004517 4.6e-29 131.0 68 80.9
Gohir.D01G001100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 4.6e-29 131.0 68 82.4
Lj6g0000311 Lotus japonicus HOM05D003896 ORTHO05D004517 4.6e-29 131.0 68 82.4
BraA08t35095Z Brassica rapa HOM05D003896 ORTHO05D004517 6.0e-29 130.6 80 72.5
Dinv24242 Davidia involucrata HOM05D003896 ORTHO05D004517 6.0e-29 130.6 68 82.4
Nn1g06112 Nelumbo nucifera HOM05D003896 ORTHO05D004517 6.0e-29 130.6 68 83.8
Medtr2g008070 Medicago truncatula HOM05D003896 ORTHO05D004517 7.9e-29 130.2 72 76.4
Carub.0001s1488 Capsella rubella HOM05D003896 ORTHO05D004517 1.0e-28 129.8 68 79.4
Lsat_1_v5_gn_9_116680 Lactuca sativa HOM05D003896 ORTHO05D004517 1.8e-28 129.0 68 75.0
Psat1g218920 Pisum sativum HOM05D003896 ORTHO05D004517 1.8e-28 129.0 68 79.4
TPR.G19749 Trifolium pratense HOM05D003896 ORTHO05D004517 1.8e-28 129.0 72 73.6
Duzib248G1617 Durio zibethinus HOM05D003896 ORTHO05D004517 2.3e-28 128.6 68 80.9
ECA236G2466 Erigeron canadensis HOM05D003896 ORTHO05D004517 2.3e-28 128.6 68 76.5
Gohir.A01G001400 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.3e-28 128.6 68 79.4
vmacro22914 Vaccinium macrocarpon HOM05D003896 ORTHO05D004517 2.3e-28 128.6 68 79.4
BcaB03g13075 Brassica carinata HOM05D003896 ORTHO05D004517 3.0e-28 128.3 68 79.4
Dinv05188 Davidia involucrata HOM05D003896 ORTHO05D004517 3.0e-28 128.3 68 79.4
FAN12G2386 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.0e-28 128.3 68 79.4
FAN17G0735 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.0e-28 128.3 68 79.4
HanXRQChr11g0337591 Helianthus annuus HOM05D003896 ORTHO05D004517 3.0e-28 128.3 68 76.5
Cpa.g.sc2.46 Carica papaya HOM05D003896 ORTHO05D004517 5.1e-28 127.5 70 77.1
Duzib132G0061 Durio zibethinus HOM05D003896 ORTHO05D004517 6.7e-28 127.1 68 80.9
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 6.7e-28 127.1 67 74.6
A02p31670 Brassica napus HOM05D003896 ORTHO05D004517 8.7e-28 126.7 69 78.3
C02p49010 Brassica napus HOM05D003896 ORTHO05D004517 8.7e-28 126.7 69 78.3
BolC2t10995H Brassica oleracea HOM05D003896 ORTHO05D004517 8.7e-28 126.7 84 66.7
Gohir.A12G033300 Gossypium hirsutum HOM05D003896 ORTHO05D004517 8.7e-28 126.7 68 79.4
Gohir.D12G039500 Gossypium hirsutum HOM05D003896 ORTHO05D004517 8.7e-28 126.7 68 79.4
BraA02t08170Z Brassica rapa HOM05D003896 ORTHO05D004517 1.1e-27 126.3 68 79.4
EL10Ac1g01528 Beta vulgaris HOM05D003896 ORTHO05D004517 1.5e-27 125.9 69 76.8
CARHR143640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 1.5e-27 125.9 68 79.4
CDE04G0116 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 1.5e-27 125.9 68 79.4
Dinv01060 Davidia involucrata HOM05D003896 ORTHO05D004517 1.9e-27 125.6 68 79.4
TAR381G0439 Trochodendron aralioides HOM05D003896 ORTHO05D004517 1.9e-27 125.6 60 90.0
Aqoxy5G02118 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 2.5e-27 125.2 67 82.1
AUR62035137 Chenopodium quinoa HOM05D003896 ORTHO05D004517 2.5e-27 125.2 69 76.8
AUR62042907 Chenopodium quinoa HOM05D003896 ORTHO05D004517 2.5e-27 125.2 69 76.8
Os11g0162200 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 4.3e-27 124.4 68 73.5
MD05G1023300 Malus domestica HOM05D003896 ORTHO05D004517 5.6e-27 124.0 69 75.4
Potri.005G190901 Populus trichocarpa HOM05D003896 ORTHO05D004517 5.6e-27 124.0 68 75.0
Thhalv10001040m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 9.6e-27 123.2 65 83.1
CiPaw.06G150500 Carya illinoinensis HOM05D003896 ORTHO05D004517 1.3e-26 122.9 68 77.9
FvH4_7g02900 Fragaria vesca HOM05D003896 ORTHO05D004517 1.3e-26 122.9 66 78.8
FAN03G2302 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.3e-26 122.9 68 76.5
Atru.chr13.2169 Acer truncatum HOM05D003896 ORTHO05D004517 2.1e-26 122.1 68 75.0
Sabra05G0145900 Salix brachista HOM05D003896 ORTHO05D004517 2.1e-26 122.1 60 86.7
THA.LOC109117087 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 2.1e-26 122.1 68 76.5
BcaB02g06577 Brassica carinata HOM05D003896 ORTHO05D004517 4.8e-26 120.9 67 79.1
C05p13240 Brassica napus HOM05D003896 ORTHO05D004517 6.2e-26 120.6 65 80.0
FAN08G0225 Fragaria x ananassa HOM05D003896 ORTHO05D004517 6.2e-26 120.6 58 87.9
A06p11120 Brassica napus HOM05D003896 ORTHO05D004517 8.2e-26 120.2 61 83.6
FAN06G4594 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.1e-25 119.8 66 77.3
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 1.1e-25 119.8 61 83.6
Manes.18G073709 Manihot esculenta HOM05D003896 ORTHO05D004517 1.4e-25 119.4 68 75.0
Manes.18G090900 Manihot esculenta HOM05D003896 ORTHO05D004517 1.4e-25 119.4 68 75.0
Sc26g0002640 Simmondsia chinensis HOM05D003896 ORTHO05D004517 1.4e-25 119.4 68 75.0
TWI34G0745 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 1.4e-25 119.4 68 75.0
A09p61560 Brassica napus HOM05D003896 ORTHO05D004517 1.8e-25 119.0 63 81.0
BraA06t24292Z Brassica rapa HOM05D003896 ORTHO05D004517 1.8e-25 119.0 61 82.0
BraA09t41529Z Brassica rapa HOM05D003896 ORTHO05D004517 1.8e-25 119.0 63 81.0
Nitab4.5_0000078g0350 Nicotiana tabacum HOM05D003896 ORTHO05D004517 1.8e-25 119.0 68 73.5
Nitab4.5_0004027g0040 Nicotiana tabacum HOM05D003896 ORTHO05D004517 1.8e-25 119.0 68 73.5
GSVIVG01034509001 Vitis vinifera HOM05D003896 ORTHO05D004517 1.8e-25 119.0 69 71.0
AT2G01090 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 2.4e-25 118.6 59 84.7
Thecc.08G150500 Theobroma cacao HOM05D003896 ORTHO05D004517 3.1e-25 118.2 68 69.1
TAR625G1245 Trochodendron aralioides HOM05D003896 ORTHO05D004517 3.1e-25 118.2 59 86.4
Gorai.002G001600 Gossypium raimondii HOM05D003896 ORTHO05D004517 5.3e-25 117.5 60 83.3
C08p45150 Brassica napus HOM05D003896 ORTHO05D004517 9.0e-25 116.7 61 80.3
Gorai.008G041200 Gossypium raimondii HOM05D003896 ORTHO05D004517 9.0e-25 116.7 63 77.8
HanXRQChr11g0337581 Helianthus annuus HOM05D003896 ORTHO05D004517 9.0e-25 116.7 69 69.6
Hma1.2p1_1800F.1_g302950 Hydrangea macrophylla HOM05D003896 ORTHO05D004517 9.0e-25 116.7 68 73.5
Prupe.8G028000 Prunus persica HOM05D003896 ORTHO05D004517 9.0e-25 116.7 68 73.5
Thhalv10009667m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 2.0e-24 115.5 60 80.0
unitig_578.g15948 Utricularia gibba HOM05D003896 ORTHO05D004517 2.0e-24 115.5 68 73.5
Oeu012724.1 Olea europaea HOM05D003896 ORTHO05D004517 3.4e-24 114.8 68 70.6
PSO210G7830 Papaver somniferum HOM05D003896 ORTHO05D004517 3.4e-24 114.8 68 72.1
PSO238G0030 Papaver somniferum HOM05D003896 ORTHO05D004517 3.4e-24 114.8 68 72.1
Peaxi162Scf00067g02527 Petunia axillaris HOM05D003896 ORTHO05D004517 3.4e-24 114.8 68 72.1
Ciclev10002923m.g Citrus clementina HOM05D003896 ORTHO05D004517 5.8e-24 114.0 68 72.1
FAN07G2777 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.0e-23 113.2 60 78.3
Migut.N01017 Erythranthe guttata HOM05D003896 ORTHO05D004517 1.3e-23 112.8 68 69.1
AagrBONN_evm.TU.Sc2ySwM_228.2620 Anthoceros agrestis HOM05D003896 ORTHO05D004517 1.7e-23 112.5 67 70.1
CBR_g10999 Chara braunii HOM05D003896 ORTHO05D004517 2.2e-23 112.1 66 71.2
Mapoly0020s0072 Marchantia polymorpha HOM05D003896 ORTHO05D004517 2.2e-23 112.1 66 69.7
PGSC0003DMG400011391 Solanum tuberosum HOM05D003896 ORTHO05D004517 3.8e-23 111.3 68 67.6
CAN.G339.37 Capsicum annuum HOM05D003896 ORTHO05D004517 4.9e-23 110.9 68 67.6
Solyc09g150155.1 Solanum lycopersicum HOM05D003896 ORTHO05D004517 4.9e-23 110.9 69 66.7
Migut.B00649 Erythranthe guttata HOM05D003896 ORTHO05D004517 6.5e-23 110.5 68 67.6
Solyc09g074870.4 Solanum lycopersicum HOM05D003896 ORTHO05D004517 6.5e-23 110.5 68 69.1
Sopen09g029690 Solanum pennellii HOM05D003896 ORTHO05D004517 6.5e-23 110.5 68 69.1
Duzib116G0919 Durio zibethinus HOM05D003896 ORTHO05D004517 1.1e-22 109.8 68 66.2
SalBow6G5306 Salvia bowleyana HOM05D003896 ORTHO05D004517 1.1e-22 109.8 66 68.2
Zm00001eb202390 Zea mays HOM05D003896 ORTHO05D004517 5.5e-22 107.5 64 67.2
Peaxi162Scf00152g01234 Petunia axillaris HOM05D003896 ORTHO05D004517 1.2e-21 106.3 97 52.6
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 6.1e-21 104.0 76 57.9
Gorai.013G108600 Gossypium raimondii HOM05D003896 ORTHO05D004517 6.1e-21 104.0 68 64.7
Lsat_1_v5_gn_7_79760 Lactuca sativa HOM05D003896 ORTHO05D004517 6.1e-21 104.0 54 75.9
Gohir.A02G111100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 7.9e-21 103.6 68 63.2
Pp3c26_10210 Physcomitrium patens HOM05D003896 ORTHO05D004517 7.9e-21 103.6 63 69.8
Pp3c26_10390 Physcomitrium patens HOM05D003896 ORTHO05D004517 7.9e-21 103.6 63 69.8
Gohir.D03G062900 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.8e-20 102.4 68 63.2
Nitab4.5_0005474g0030 Nicotiana tabacum HOM05D003896 ORTHO05D004517 2.3e-20 102.1 84 57.1
PRCOL_00005271 Prasinoderma coloniale HOM05D003896 ORTHO05D004517 1.1e-19 99.8 67 62.7
CAN.G339.36 Capsicum annuum HOM05D000541 ORTHO05D000137 1.5e-19 99.4 61 67.2
Zm00001eb139450 Zea mays HOM05D003896 ORTHO05D004517 1.5e-19 99.4 57 71.9
CBR_g10998 Chara braunii HOM05D016306 ORTHO05D018315 1.6e-18 95.9 66 60.6
Nitab4.5_0013344g0010 Nicotiana tabacum HOM05D003896 ORTHO05D004517 6.3e-18 94.0 54 70.4
Duzib132G0328 Durio zibethinus HOM05D003896 ORTHO05D004517 1.8e-17 92.4 41 90.2
Pp3c19_20470 Physcomitrium patens HOM05D003896 ORTHO05D004517 5.3e-17 90.9 75 52.0
ClCG05G009840 Citrullus lanatus HOM05D003896 ORTHO05D004517 6.9e-17 90.5 40 87.5
Atru.chr6.943 Acer truncatum HOM05D003896 ORTHO05D004517 1.5e-16 89.4 40 87.5
MCO16G078 Micromonas commoda HOM05D003896 ORTHO05D004517 2.6e-16 88.6 67 55.2
SMO117G0126 Selaginella moellendorffii HOM05D003896 ORTHO05D004517 2.2e-15 85.5 58 58.6
Thhalv10028069m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 6.1e-13 77.4 43 81.4
Thhalv10029056m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 6.1e-13 77.4 43 81.4
PGSC0003DMG400011392 Solanum tuberosum HOM05D003896 ORTHO05D004517 1.0e-12 76.6 55 58.2
FAN22G1408 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.5e-11 72.0 42 73.8
unitig_8.g2965 Utricularia gibba HOM05D003896 ORTHO05D004517 4.8e-10 67.8 32 78.1
Zm00001eb181710 Zea mays HOM05D003896 ORTHO05D004517 6.9e-09 63.9 68 47.1
COL.COLO4_17923 Corchorus olitorius HOM05D003896 ORTHO05D004517 1.5e-08 62.8 40 67.5
Zm00001eb243140 Zea mays HOM05D003896 ORTHO05D004517 1.3e-07 59.7 68 44.1
arahy.Tifrunner.gnm1.ann1.13ME4F Arachis hypogaea HOM05D000724 ORTHO05D015426 6.5e-07 57.4 48 54.2
Os02g0541700 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 2.5e-06 55.5 68 42.6


User provided reference genes

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