Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 4.2e-259 897.5 449 100.0
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 8.8e-217 756.9 449 83.7
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 1.9e-211 739.2 443 83.1
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 1.5e-203 713.0 449 78.6
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 2.5e-203 712.2 443 79.5
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 3.3e-200 701.8 449 77.5
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 3.1e-198 695.3 445 76.9
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 9.4e-195 683.7 445 76.0
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 2.7e-194 682.2 449 76.4
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 5.2e-193 677.9 449 73.7
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 2.6e-192 675.6 444 76.1
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 4.4e-192 674.9 444 76.4
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 4.8e-191 671.4 453 75.1
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 1.4e-190 669.8 446 74.7
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 1.8e-190 669.5 449 74.4
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 2.0e-189 666.0 444 73.9
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 3.5e-189 665.2 449 73.7
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 4.5e-189 664.8 447 74.9
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.3e-188 663.3 445 74.2
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 3.8e-188 661.8 449 74.6
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 1.1e-187 660.2 439 74.9
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 1.1e-187 660.2 449 74.2
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 1.9e-187 659.4 443 73.4
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 3.3e-187 658.7 449 73.3
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 5.5e-187 657.9 443 74.0
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 7.2e-187 657.5 445 74.4
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 3.6e-186 655.2 453 72.0
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 3.4e-184 648.7 452 71.9
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 1.4e-182 643.3 443 71.1
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 7.0e-182 641.0 452 71.2
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 3.5e-181 638.6 417 77.9
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 4.5e-181 638.3 447 71.1
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 1.7e-180 636.3 443 71.1
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 2.3e-180 636.0 446 72.2
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 1.1e-179 633.6 449 69.9
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 5.6e-179 631.3 450 71.3
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.8e-178 629.0 450 71.1
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 8.0e-178 627.5 443 70.9
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 1.8e-177 626.3 440 70.5
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 1.8e-177 626.3 403 76.9
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 2.3e-177 625.9 435 70.8
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 5.2e-177 624.8 441 71.2
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 6.8e-177 624.4 450 70.2
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 8.9e-177 624.0 451 70.7
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 1.2e-176 623.6 449 68.4
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 2.0e-176 622.9 441 71.2
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 5.8e-176 621.3 446 70.0
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 5.8e-176 621.3 446 70.0
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 1.3e-175 620.2 445 69.9
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 4.9e-175 618.2 451 68.5
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 6.4e-175 617.8 445 71.2
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 1.1e-174 617.1 445 69.2
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 2.4e-174 615.9 435 70.3
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 4.1e-174 615.1 434 68.7
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 7.0e-174 614.4 440 69.3
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 9.2e-174 614.0 450 69.6
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 2.7e-173 612.5 445 69.7
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 6.0e-173 611.3 446 69.3
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 1.0e-172 610.5 448 69.4
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 1.0e-172 610.5 444 68.9
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 1.7e-172 609.8 444 69.4
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 3.0e-172 609.0 437 69.6
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 6.6e-172 607.8 445 68.8
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 1.1e-171 607.1 445 69.0
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 5.6e-171 604.7 443 68.4
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 2.1e-170 602.8 451 67.4
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 2.8e-170 602.4 443 69.1
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 8.0e-170 600.9 414 72.5
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 4.4e-168 595.1 435 70.3
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 4.9e-167 591.7 417 70.5
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 4.9e-167 591.7 414 69.6
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 6.4e-167 591.3 430 68.4
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 6.4e-167 591.3 445 66.7
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 2.4e-166 589.3 443 65.7
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 1.2e-165 587.0 438 69.2
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 2.1e-165 586.3 446 68.6
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 1.9e-163 579.7 464 65.9
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 1.6e-162 576.6 460 64.8
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 6.2e-162 574.7 438 66.7
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 4.9e-159 565.1 440 66.8
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 4.9e-159 565.1 440 66.8
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 1.1e-158 563.9 440 65.9
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 1.9e-158 563.1 440 65.0
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 7.1e-158 561.2 382 73.8
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 9.2e-158 560.8 440 65.2
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 2.1e-157 559.7 439 67.2
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 2.7e-157 559.3 454 65.9
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 1.3e-156 557.0 439 66.7
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 3.9e-156 555.4 458 64.8
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 6.6e-156 554.7 438 63.0
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 1.1e-155 553.9 451 63.9
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.9e-155 553.1 457 64.8
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 4.3e-155 552.0 443 65.5
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 7.3e-155 551.2 432 65.0
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 1.2e-154 550.4 454 64.3
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 1.6e-154 550.1 432 63.4
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 3.6e-154 548.9 437 65.9
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 4.7e-154 548.5 349 75.6
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 8.1e-154 547.7 457 64.3
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 2.4e-153 546.2 450 64.7
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 3.1e-153 545.8 438 65.8
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 4.0e-153 545.4 440 65.9
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 4.0e-153 545.4 453 64.5
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 8.9e-153 544.3 434 62.9
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 1.2e-152 543.9 437 65.9
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 2.0e-152 543.1 438 65.5
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 2.0e-152 543.1 438 65.5
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 2.6e-152 542.7 374 70.1
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 2.2e-151 539.7 436 65.4
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 2.9e-151 539.3 443 64.6
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 2.9e-151 539.3 349 74.8
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 1.6e-149 533.5 348 76.1
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 3.9e-148 528.9 433 64.2
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 1.5e-147 526.9 378 68.3
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 2.4e-145 519.6 433 64.0
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 4.4e-144 515.4 368 70.9
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 3.2e-142 509.2 441 58.0
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 5.4e-142 508.4 431 58.9
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 3.5e-141 505.8 347 70.9
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 1.3e-140 503.8 445 62.5
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 3.0e-140 502.7 418 61.7
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 8.7e-140 501.1 429 58.7
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 1.4e-137 493.8 318 75.5
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 1.9e-134 483.4 362 67.1
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 1.3e-124 450.7 333 66.7
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 3.1e-121 439.5 442 55.9
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 6.5e-119 431.8 353 64.3
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 2.0e-112 410.2 386 58.3
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 2.8e-106 389.8 320 62.2
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 2.8e-106 389.8 320 62.2
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 5.0e-95 352.4 459 46.0
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 8.5e-95 351.7 386 49.7
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 1.1e-81 308.1 231 65.4
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 5.2e-76 289.3 190 75.3
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.7e-71 274.2 252 58.3
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 5.7e-67 259.2 393 42.2
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 1.5e-62 244.6 138 82.6
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.2e-59 235.0 164 70.1
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 2.0e-56 224.2 262 50.0
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 2.3e-39 167.5 106 75.5
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 1.6e-37 161.4 151 57.6
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 5.8e-35 152.9 144 59.7
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 1.2e-32 145.2 110 71.8
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 1.3e-31 141.7 111 69.4
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 4.4e-27 126.7 99 58.6
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 1.8e-15 88.2 51 78.4
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 2.3e-07 61.2 54 53.7


User provided reference genes

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