Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 1.2e-205 719.5 334 100.0
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 1.4e-190 669.5 326 95.1
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 4.1e-179 631.3 322 89.4
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 8.6e-177 623.6 324 87.0
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 8.6e-177 623.6 326 86.5
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 1.9e-176 622.5 326 87.1
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 5.6e-176 620.9 326 86.8
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 1.2e-175 619.8 322 86.6
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 1.2e-175 619.8 326 86.5
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 1.6e-175 619.4 326 86.5
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 2.8e-175 618.6 324 87.3
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 4.7e-175 617.8 325 87.4
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 1.8e-174 615.9 324 86.1
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 2.3e-174 615.5 322 86.3
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 3.1e-174 615.1 326 86.8
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 4.0e-174 614.8 324 86.4
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 1.2e-173 613.2 324 85.5
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 2.0e-173 612.5 326 85.6
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 2.6e-173 612.1 324 85.2
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 3.4e-173 611.7 324 85.8
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 3.4e-173 611.7 322 86.3
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 4.4e-173 611.3 326 85.0
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 4.4e-173 611.3 326 85.6
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 5.8e-173 610.9 322 84.8
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 7.6e-173 610.5 327 84.7
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 9.9e-173 610.1 322 85.7
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.3e-172 609.8 321 85.7
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 1.3e-172 609.8 326 84.7
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 2.2e-172 609.0 326 85.3
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 2.9e-172 608.6 324 85.2
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 3.7e-172 608.2 326 84.4
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 3.7e-172 608.2 327 85.9
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 4.9e-172 607.8 322 85.1
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 6.4e-172 607.4 322 85.7
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 6.4e-172 607.4 326 84.0
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 8.3e-172 607.1 326 85.0
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 8.3e-172 607.1 326 83.1
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 8.3e-172 607.1 326 84.0
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 1.1e-171 606.7 324 84.9
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 1.4e-171 606.3 324 85.2
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 2.4e-171 605.5 326 84.0
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 3.2e-171 605.1 326 83.7
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 3.2e-171 605.1 326 82.8
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 3.2e-171 605.1 322 85.4
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 3.2e-171 605.1 326 85.3
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 4.1e-171 604.7 326 84.4
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 4.1e-171 604.7 326 84.0
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 5.4e-171 604.4 324 84.3
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 5.4e-171 604.4 324 84.9
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 9.2e-171 603.6 324 85.2
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 9.2e-171 603.6 326 83.4
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 9.2e-171 603.6 322 83.9
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 1.2e-170 603.2 324 84.9
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 1.2e-170 603.2 324 84.6
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.6e-170 602.8 324 84.3
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 2.1e-170 602.4 322 84.2
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 2.1e-170 602.4 322 84.2
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 2.1e-170 602.4 326 84.0
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 2.1e-170 602.4 322 83.5
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 2.1e-170 602.4 322 84.5
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 3.5e-170 601.7 318 84.9
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 4.6e-170 601.3 322 84.2
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 7.8e-170 600.5 326 81.6
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 1.3e-169 599.7 322 85.1
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 1.3e-169 599.7 321 83.8
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 1.3e-169 599.7 324 84.3
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 1.7e-169 599.4 326 82.8
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 2.3e-169 599.0 326 82.2
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 3.0e-169 598.6 326 83.4
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 3.9e-169 598.2 324 84.3
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 3.9e-169 598.2 322 83.9
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 5.1e-169 597.8 322 82.9
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 5.1e-169 597.8 322 82.9
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 5.1e-169 597.8 319 84.6
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 6.6e-169 597.4 322 82.9
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 6.6e-169 597.4 322 83.9
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 8.6e-169 597.0 316 85.4
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 1.9e-168 595.9 326 83.1
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 2.5e-168 595.5 324 82.7
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 2.5e-168 595.5 322 83.2
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 4.3e-168 594.7 322 82.6
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 5.6e-168 594.3 322 84.2
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 7.3e-168 594.0 324 82.4
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 9.6e-168 593.6 322 82.0
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 9.6e-168 593.6 322 82.3
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 1.2e-167 593.2 326 82.5
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 2.1e-167 592.4 326 81.3
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 3.6e-167 591.7 324 83.3
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 6.2e-167 590.9 326 81.6
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 1.4e-166 589.7 322 82.0
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 1.4e-166 589.7 322 83.9
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 1.8e-166 589.3 326 81.3
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 2.4e-166 589.0 326 81.6
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 3.1e-166 588.6 326 80.7
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 4.0e-166 588.2 326 81.6
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 6.8e-166 587.4 322 81.4
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 8.9e-166 587.0 316 82.6
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 2.0e-165 585.9 326 80.7
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 2.0e-165 585.9 324 81.2
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 2.6e-165 585.5 322 81.7
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 9.9e-165 583.6 323 81.4
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 9.9e-165 583.6 323 81.4
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 2.2e-164 582.4 323 80.5
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 4.9e-164 581.3 323 81.4
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 6.4e-164 580.9 319 80.3
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 1.4e-163 579.7 323 81.1
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 1.4e-163 579.7 392 70.4
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 1.9e-163 579.3 323 80.8
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 2.4e-163 578.9 323 81.1
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 2.4e-163 578.9 315 82.5
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 4.6e-162 574.7 323 80.5
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 1.3e-161 573.2 323 80.2
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 1.7e-161 572.8 316 80.1
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 1.8e-158 562.8 327 79.8
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 2.4e-158 562.4 322 78.3
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 5.3e-158 561.2 290 87.9
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 4.9e-156 554.7 315 79.4
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 3.9e-153 545.0 289 85.5
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 6.6e-153 544.3 325 75.1
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.1e-152 543.5 287 85.7
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 5.3e-150 534.6 316 78.8
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 6.9e-150 534.3 327 76.1
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 2.2e-148 529.3 323 73.7
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 2.9e-148 528.9 323 76.2
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 2.3e-145 519.2 322 71.1
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 3.3e-144 515.4 289 79.2
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 1.6e-135 486.5 269 82.5
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 5.3e-134 481.5 321 66.7
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 3.6e-122 442.2 230 87.8
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 4.8e-119 431.8 285 68.1
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 5.0e-116 421.8 321 57.6
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 2.5e-115 419.5 282 72.7
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 4.8e-103 378.6 187 92.5
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 3.8e-100 369.0 318 50.3
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 2.3e-97 359.8 187 85.6
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 3.4e-96 355.9 186 84.4
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 9.1e-94 347.8 318 52.2
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 5.6e-83 312.0 322 45.7
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 9.8e-80 301.2 155 86.5
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 5.0e-68 262.3 139 84.9
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 3.4e-64 249.6 179 67.0
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 8.4e-55 218.4 109 90.8
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 8.1e-50 201.8 121 74.4
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 5.2e-49 199.1 123 71.5
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 4.2e-46 189.5 136 63.2
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 1.2e-45 188.0 127 69.3
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 9.9e-32 141.7 84 78.6
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 2.9e-31 140.2 84 77.4
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 3.7e-26 123.2 101 59.4
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 4.8e-26 122.9 76 71.1
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 3.0e-12 77.0 52 65.4


User provided reference genes

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