Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p016282 Quercus lobata HOM05D007312 ORTHO05D009209 1.4e-66 256.1 125 100.0
CiPaw.09G076400 Carya illinoinensis HOM05D007312 ORTHO05D009209 2.6e-62 241.9 125 91.2
TWI63G0684 Tripterygium wilfordii HOM05D007312 ORTHO05D009209 1.5e-52 209.5 125 83.2
MD05G1250400 Malus domestica HOM05D007312 ORTHO05D009209 5.5e-52 207.6 128 80.5
Atru.chr10.560 Acer truncatum HOM05D007312 ORTHO05D009209 4.7e-51 204.5 125 82.4
Potri.012G124500 Populus trichocarpa HOM05D007312 ORTHO05D009209 6.1e-51 204.1 126 83.3
TPR.G38271 Trifolium pratense HOM05D007312 ORTHO05D009209 8.0e-51 203.8 126 81.7
Duzib052G0161 Durio zibethinus HOM05D007312 ORTHO05D009209 1.0e-50 203.4 128 80.5
Manes.16G055800 Manihot esculenta HOM05D007312 ORTHO05D009209 1.0e-50 203.4 126 80.2
Medtr4g084180 Medicago truncatula HOM05D007312 ORTHO05D009209 1.0e-50 203.4 125 77.6
PGR042G3076 Punica granatum HOM05D007312 ORTHO05D009209 2.3e-50 202.2 125 78.4
Gohir.A12G046700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 3.0e-50 201.8 126 80.2
MELO3C021735.2 Cucumis melo HOM05D007312 ORTHO05D009209 4.4e-49 198.0 129 79.1
Ciclev10017175m.g Citrus clementina HOM05D007312 ORTHO05D009209 5.7e-49 197.6 129 78.3
ClCG01G009570 Citrullus lanatus HOM05D007312 ORTHO05D009209 7.5e-49 197.2 129 79.1
Haze_06075 Corylus avellana HOM05D007312 ORTHO05D009209 9.7e-49 196.8 121 81.0
CANSAT35G0781 Cannabis sativa HOM05D007312 ORTHO05D009209 1.3e-48 196.4 125 77.6
Cc09_g06000 Coffea canephora HOM05D007312 ORTHO05D009209 1.3e-48 196.4 125 80.0
Hma1.2p1_1005F.1_g246920 Hydrangea macrophylla HOM05D007312 ORTHO05D009209 1.7e-48 196.1 130 76.9
Ca_18754_v3 Cicer arietinum L. HOM05D007312 ORTHO05D009209 2.2e-48 195.7 126 76.2
CsaV3_1G046220 Cucumis sativus L. HOM05D007312 ORTHO05D009209 2.2e-48 195.7 129 78.3
Sopen02g017880 Solanum pennellii HOM05D007312 ORTHO05D009209 2.8e-48 195.3 127 78.0
PGSC0003DMG400010438 Solanum tuberosum HOM05D007312 ORTHO05D009209 2.8e-48 195.3 127 78.0
Glyma.20G019100 Glycine max HOM05D007312 ORTHO05D009209 3.7e-48 194.9 128 77.3
GSVIVG01012104001 Vitis vinifera HOM05D007312 ORTHO05D009209 3.7e-48 194.9 125 76.8
Eucgr.E04250 Eucalyptus grandis HOM05D007312 ORTHO05D009209 6.3e-48 194.1 134 73.1
VMungo0251G1106 Vigna mungo HOM05D007312 ORTHO05D009209 1.1e-47 193.4 128 75.0
AL1G49340 Arabidopsis lyrata HOM05D007312 ORTHO05D009209 1.4e-47 193.0 126 75.4
CSS0025621 Camellia sinensis var. sinensis HOM05D007312 ORTHO05D009209 1.8e-47 192.6 127 74.0
Lj2A350T56 Lonicera japonica HOM05D007312 ORTHO05D009209 1.8e-47 192.6 123 77.2
AT1G31170 Arabidopsis thaliana HOM05D007312 ORTHO05D009209 3.1e-47 191.8 126 74.6
CARHR030640 Cardamine hirsuta HOM05D007312 ORTHO05D009209 3.1e-47 191.8 126 75.4
Thhalv10009117m.g Eutrema salsugineum HOM05D007312 ORTHO05D009209 3.1e-47 191.8 126 74.6
Nitab4.5_0007745g0050 Nicotiana tabacum HOM05D007312 ORTHO05D009209 3.1e-47 191.8 127 78.0
Phvul.002G097300 Phaseolus vulgaris HOM05D007312 ORTHO05D009209 3.1e-47 191.8 128 74.2
Solyc02g068710.3 Solanum lycopersicum HOM05D007312 ORTHO05D009209 4.1e-47 191.4 127 77.2
TAR624G0630 Trochodendron aralioides HOM05D007312 ORTHO05D009209 4.1e-47 191.4 125 76.0
Sabra12G0094300 Salix brachista HOM05D007312 ORTHO05D009209 5.3e-47 191.0 122 81.1
HanXRQChr12g0381571 Helianthus annuus HOM05D007312 ORTHO05D009209 1.2e-46 189.9 129 72.1
RcHm_v2.0_Chr5g0020311 Rosa chinensis HOM05D007312 ORTHO05D009209 1.6e-46 189.5 128 75.0
MSTRG.7597 Avicennia marina HOM05D007312 ORTHO05D009209 2.0e-46 189.1 125 76.0
BcaC07g37774 Brassica carinata HOM05D007312 ORTHO05D009209 2.0e-46 189.1 122 75.4
Actinidia22408 Actinidia chinensis HOM05D007312 ORTHO05D009209 2.7e-46 188.7 125 75.2
BcaB04g18176 Brassica carinata HOM05D007312 ORTHO05D009209 2.7e-46 188.7 128 74.2
Nitab4.5_0001288g0230 Nicotiana tabacum HOM05D007312 ORTHO05D009209 2.7e-46 188.7 125 76.8
EL10Ac5g12681 Beta vulgaris HOM05D007312 ORTHO05D009209 3.5e-46 188.3 125 75.2
ECA234G3951 Erigeron canadensis HOM05D007312 ORTHO05D009209 3.5e-46 188.3 131 73.3
Peaxi162Scf00149g00224 Petunia axillaris HOM05D007312 ORTHO05D009209 7.7e-46 187.2 125 75.2
Lj4g0021225 Lotus japonicus HOM05D007312 ORTHO05D009209 1.0e-45 186.8 128 75.0
AUR62010557 Chenopodium quinoa HOM05D007312 ORTHO05D009209 1.3e-45 186.4 121 78.5
Sp1g26990 Schrenkiella parvula HOM05D007312 ORTHO05D009209 2.2e-45 185.7 126 72.2
Hund14701 Selenicereus undatus HOM05D007312 ORTHO05D009209 2.2e-45 185.7 124 75.8
Lsat_1_v5_gn_3_106761 Lactuca sativa HOM05D007312 ORTHO05D009209 2.9e-45 185.3 127 73.2
Ah.01g020500 Amaranthus hybridus HOM05D007312 ORTHO05D009209 5.0e-45 184.5 121 77.7
SalBow8G4543 Salvia bowleyana HOM05D007312 ORTHO05D009209 8.5e-45 183.7 122 76.2
Carub.0001s2957 Capsella rubella HOM05D007312 ORTHO05D009209 1.1e-44 183.3 122 73.8
Psat7g129800 Pisum sativum HOM05D007312 ORTHO05D009209 2.5e-44 182.2 116 78.4
Lalb_Chr16g0385171 Lupinus albus HOM05D007312 ORTHO05D009209 4.2e-44 181.4 126 71.4
MBI18_g11473_MAGBIO Magnolia biondii HOM05D007312 ORTHO05D009209 1.2e-43 179.9 108 80.6
A08p10710 Brassica napus HOM05D007312 ORTHO05D009209 1.6e-43 179.5 124 73.4
BolC8t48163H Brassica oleracea HOM05D007312 ORTHO05D009209 1.6e-43 179.5 118 74.6
BraA08t33069Z Brassica rapa HOM05D007312 ORTHO05D009209 1.6e-43 179.5 124 73.4
FvH4_3g12430 Fragaria vesca HOM05D007312 ORTHO05D009209 1.6e-43 179.5 124 73.4
SGA_v2.0_scaffold298G47689 Striga asiatica HOM05D007312 ORTHO05D009209 2.1e-43 179.1 125 71.2
Os06g0174300 Oryza sativa ssp. japonica HOM05D007312 ORTHO05D009209 2.7e-43 178.7 109 81.7
PSO541G3426 Papaver somniferum HOM05D007312 ORTHO05D009209 6.1e-43 177.6 125 70.4
Zm00001eb375250 Zea mays HOM05D007312 ORTHO05D009209 6.1e-43 177.6 114 78.1
unitig_32.g10991 Utricularia gibba HOM05D000532 ORTHO05D009209 4.0e-42 174.9 96 84.4
AUR62017332 Chenopodium quinoa HOM05D007312 ORTHO05D009209 5.2e-42 174.5 121 74.4
THA.LOC104798553 Tarenaya hassleriana HOM05D007312 ORTHO05D009209 5.2e-42 174.5 128 71.1
RhsimUnG0109200 Rhododendron simsii HOM05D007312 ORTHO05D009209 1.2e-41 173.3 121 72.7
CDE02G1125 Ceratophyllum demersum HOM05D007312 ORTHO05D009209 2.6e-41 172.2 130 72.3
Aa31LG2G15110 Aethionema arabicum HOM05D007312 ORTHO05D009209 3.4e-41 171.8 106 78.3
Rhsim13G0146500 Rhododendron simsii HOM05D007312 ORTHO05D009209 7.5e-41 170.6 121 71.9
arahy.Tifrunner.gnm1.ann1.XDA00H Arachis hypogaea HOM05D007312 ORTHO05D009209 9.8e-41 170.2 125 72.8
Migut.M01988 Erythranthe guttata HOM05D007312 ORTHO05D009209 9.8e-41 170.2 91 87.9
arahy.Tifrunner.gnm1.ann1.FJ5394 Arachis hypogaea HOM05D007312 ORTHO05D009209 1.8e-39 166.0 125 74.4
CAN.G149.9 Capsicum annuum HOM05D007312 ORTHO05D009209 1.8e-39 166.0 97 85.6
vmacro03527 Vaccinium macrocarpon HOM05D007312 ORTHO05D009209 9.1e-39 163.7 86 87.2
Aqoxy1G01718 Aquilegia oxysepala HOM05D007312 ORTHO05D009209 1.6e-38 162.9 135 61.5
HPP92_010212 Vanilla planifolia HOM05D007312 ORTHO05D009209 5.9e-38 161.0 123 66.7
Nn7g38246 Nelumbo nucifera HOM05D007312 ORTHO05D009209 6.5e-37 157.5 125 68.0
Pp3c7_15740 Physcomitrium patens HOM05D007312 ORTHO05D009209 2.5e-36 155.6 103 69.9
SMO145G0246 Selaginella moellendorffii HOM05D007312 ORTHO05D009209 2.3e-34 149.1 85 77.6
Mapoly0066s0018 Marchantia polymorpha HOM05D007312 ORTHO05D009209 5.4e-31 137.9 141 53.2
Prupe.4G113200 Prunus persica HOM05D007312 ORTHO05D009209 2.3e-29 132.5 95 74.7
RcHm_v2.0_Chr2g0126261 Rosa chinensis HOM05D007312 ORTHO05D009209 5.0e-29 131.3 85 74.1
Cre17.g729950 Chlamydomonas reinhardtii HOM05D007312 ORTHO05D009209 1.1e-28 130.2 111 60.4
CBR_g4 Chara braunii HOM05D007312 ORTHO05D009209 2.5e-28 129.0 91 67.0
Dinv25919 Davidia involucrata HOM05D007312 ORTHO05D009209 3.3e-28 128.6 90 76.7
Oeu056034.1 Olea europaea HOM05D007312 ORTHO05D009209 7.5e-25 117.5 88 68.2
HPP92_010191 Vanilla planifolia HOM05D007312 ORTHO05D009209 2.9e-24 115.5 127 53.5
Sc01g0008940 Simmondsia chinensis HOM05D007312 ORTHO05D009209 4.1e-23 111.7 81 71.6
Thecc.02G008700 Theobroma cacao HOM05D007312 ORTHO05D009209 4.1e-23 111.7 85 69.4
FAN25G0614 Fragaria x ananassa HOM05D007312 ORTHO05D009209 5.4e-23 111.3 97 66.0
Cpa.g.sc5085.1 Carica papaya HOM05D007312 ORTHO05D009209 3.5e-22 108.6 79 70.9
Gorai.008G048300 Gossypium raimondii HOM05D007312 ORTHO05D009209 6.6e-21 104.4 80 67.5
Gohir.D12G045700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 8.6e-21 104.0 80 67.5
ATR0752G167 Amborella trichopoda HOM05D007312 ORTHO05D009209 1.4e-18 96.7 81 63.0
Sed0015339 Sechium edule HOM05D007312 ORTHO05D009209 1.4e-18 96.7 84 64.3
FAN21G0246 Fragaria x ananassa HOM05D007312 ORTHO05D009209 8.9e-18 94.0 84 59.5
FAN16G3369 Fragaria x ananassa HOM05D007312 ORTHO05D009209 3.4e-17 92.0 81 61.7
COL.COLO4_17652 Corchorus olitorius HOM05D007312 ORTHO05D009209 7.5e-17 90.9 84 58.3
Sabra12G0063500 Salix brachista HOM05D007312 ORTHO05D009209 4.1e-15 85.1 49 85.7
Lalb_Chr09g0328681 Lupinus albus HOM05D007312 ORTHO05D009209 2.7e-14 82.4 41 85.4
Lalb_Chr09g0328671 Lupinus albus HOM05D007312 ORTHO05D009209 8.3e-08 60.8 85 45.9
Potri.015G124601 Populus trichocarpa HOM05D007312 ORTHO05D009209 8.3e-08 60.8 42 66.7


User provided reference genes

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